Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3441

Experiment: Sisomicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3439 and Ac3H11_3440 are separated by 51 nucleotidesAc3H11_3440 and Ac3H11_3441 are separated by 68 nucleotidesAc3H11_3441 and Ac3H11_3442 are separated by 78 nucleotidesAc3H11_3442 and Ac3H11_3443 overlap by 4 nucleotides Ac3H11_3439 - Ferredoxin--NADP(+) reductase (EC 1.18.1.2), at 122,510 to 123,286 _3439 Ac3H11_3440 - Transcriptional regulator, TetR family, at 123,338 to 124,060 _3440 Ac3H11_3441 - Enamidase (EC 3.5.2.18), at 124,129 to 125,316 _3441 Ac3H11_3442 - Outer membrane lipoprotein, at 125,395 to 126,198 _3442 Ac3H11_3443 - hypothetical protein, at 126,195 to 126,407 _3443 Position (kb) 124 125 126Strain fitness (log2 ratio) -2 -1 0 1 2at 123.539 kb on + strand, within Ac3H11_3440at 123.539 kb on + strand, within Ac3H11_3440at 123.539 kb on + strand, within Ac3H11_3440at 123.539 kb on + strand, within Ac3H11_3440at 123.539 kb on + strand, within Ac3H11_3440at 123.539 kb on + strand, within Ac3H11_3440at 123.540 kb on - strand, within Ac3H11_3440at 123.540 kb on - strand, within Ac3H11_3440at 123.540 kb on - strand, within Ac3H11_3440at 123.540 kb on - strand, within Ac3H11_3440at 123.542 kb on + strand, within Ac3H11_3440at 123.543 kb on - strand, within Ac3H11_3440at 123.543 kb on - strand, within Ac3H11_3440at 123.545 kb on + strand, within Ac3H11_3440at 123.545 kb on + strand, within Ac3H11_3440at 123.545 kb on + strand, within Ac3H11_3440at 123.546 kb on - strand, within Ac3H11_3440at 123.546 kb on - strand, within Ac3H11_3440at 123.593 kb on + strand, within Ac3H11_3440at 123.594 kb on - strand, within Ac3H11_3440at 123.686 kb on + strand, within Ac3H11_3440at 123.686 kb on + strand, within Ac3H11_3440at 123.686 kb on + strand, within Ac3H11_3440at 123.686 kb on + strand, within Ac3H11_3440at 123.686 kb on + strand, within Ac3H11_3440at 123.686 kb on + strand, within Ac3H11_3440at 123.687 kb on - strand, within Ac3H11_3440at 123.687 kb on - strand, within Ac3H11_3440at 123.687 kb on - strand, within Ac3H11_3440at 123.687 kb on - strand, within Ac3H11_3440at 123.687 kb on - strand, within Ac3H11_3440at 123.779 kb on + strand, within Ac3H11_3440at 123.872 kb on + strand, within Ac3H11_3440at 123.872 kb on + strand, within Ac3H11_3440at 123.872 kb on + strand, within Ac3H11_3440at 123.872 kb on + strand, within Ac3H11_3440at 123.872 kb on + strand, within Ac3H11_3440at 123.873 kb on - strand, within Ac3H11_3440at 123.896 kb on + strand, within Ac3H11_3440at 123.897 kb on - strand, within Ac3H11_3440at 123.902 kb on + strand, within Ac3H11_3440at 123.902 kb on + strand, within Ac3H11_3440at 123.902 kb on + strand, within Ac3H11_3440at 123.902 kb on + strand, within Ac3H11_3440at 123.902 kb on + strand, within Ac3H11_3440at 123.902 kb on + strand, within Ac3H11_3440at 123.902 kb on + strand, within Ac3H11_3440at 123.902 kb on + strand, within Ac3H11_3440at 123.902 kb on + strand, within Ac3H11_3440at 123.902 kb on + strand, within Ac3H11_3440at 123.902 kb on + strand, within Ac3H11_3440at 123.902 kb on + strand, within Ac3H11_3440at 123.902 kb on + strand, within Ac3H11_3440at 123.902 kb on + strand, within Ac3H11_3440at 123.903 kb on - strand, within Ac3H11_3440at 123.903 kb on - strand, within Ac3H11_3440at 123.903 kb on - strand, within Ac3H11_3440at 123.903 kb on - strand, within Ac3H11_3440at 123.903 kb on - strand, within Ac3H11_3440at 123.903 kb on - strand, within Ac3H11_3440at 123.903 kb on - strand, within Ac3H11_3440at 123.903 kb on - strand, within Ac3H11_3440at 123.903 kb on - strand, within Ac3H11_3440at 124.273 kb on + strand, within Ac3H11_3441at 124.273 kb on + strand, within Ac3H11_3441at 124.358 kb on + strand, within Ac3H11_3441at 124.358 kb on + strand, within Ac3H11_3441at 124.358 kb on + strand, within Ac3H11_3441at 124.358 kb on + strand, within Ac3H11_3441at 124.358 kb on + strand, within Ac3H11_3441at 124.358 kb on + strand, within Ac3H11_3441at 124.358 kb on + strand, within Ac3H11_3441at 124.358 kb on + strand, within Ac3H11_3441at 124.358 kb on + strand, within Ac3H11_3441at 124.358 kb on + strand, within Ac3H11_3441at 124.358 kb on + strand, within Ac3H11_3441at 124.359 kb on - strand, within Ac3H11_3441at 124.359 kb on - strand, within Ac3H11_3441at 124.359 kb on - strand, within Ac3H11_3441at 124.359 kb on - strand, within Ac3H11_3441at 124.359 kb on - strand, within Ac3H11_3441at 124.367 kb on + strand, within Ac3H11_3441at 124.675 kb on + strand, within Ac3H11_3441at 124.676 kb on - strand, within Ac3H11_3441at 125.315 kb on - strandat 125.399 kb on + strandat 125.399 kb on + strandat 125.399 kb on + strandat 125.399 kb on + strandat 125.399 kb on + strandat 125.400 kb on - strandat 125.400 kb on - strandat 125.441 kb on + strandat 125.582 kb on + strand, within Ac3H11_3442at 125.582 kb on + strand, within Ac3H11_3442at 125.582 kb on + strand, within Ac3H11_3442at 125.582 kb on + strand, within Ac3H11_3442at 125.583 kb on - strand, within Ac3H11_3442at 125.583 kb on - strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.628 kb on - strand, within Ac3H11_3442at 125.628 kb on - strand, within Ac3H11_3442at 125.911 kb on - strand, within Ac3H11_3442at 125.933 kb on - strand, within Ac3H11_3442at 125.933 kb on - strand, within Ac3H11_3442at 125.933 kb on - strandat 126.145 kb on + strandat 126.186 kb on + strandat 126.186 kb on + strandat 126.186 kb on + strandat 126.186 kb on + strandat 126.187 kb on - strandat 126.187 kb on - strandat 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.228 kb on - strand, within Ac3H11_3443at 126.228 kb on - strand, within Ac3H11_3443at 126.228 kb on - strand, within Ac3H11_3443at 126.228 kb on - strand, within Ac3H11_3443at 126.295 kb on + strand, within Ac3H11_3443at 126.296 kb on - strand, within Ac3H11_3443at 126.296 kb on - strand, within Ac3H11_3443

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.0005 mg/ml
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123,539 + Ac3H11_3440 0.28 +1.0
123,539 + Ac3H11_3440 0.28 +0.2
123,539 + Ac3H11_3440 0.28 -0.2
123,539 + Ac3H11_3440 0.28 +1.6
123,539 + Ac3H11_3440 0.28 +0.3
123,539 + Ac3H11_3440 0.28 -0.1
123,540 - Ac3H11_3440 0.28 -0.4
123,540 - Ac3H11_3440 0.28 -0.4
123,540 - Ac3H11_3440 0.28 -1.2
123,540 - Ac3H11_3440 0.28 +0.0
123,542 + Ac3H11_3440 0.28 +0.4
123,543 - Ac3H11_3440 0.28 -0.0
123,543 - Ac3H11_3440 0.28 -0.1
123,545 + Ac3H11_3440 0.29 +0.2
123,545 + Ac3H11_3440 0.29 +0.3
123,545 + Ac3H11_3440 0.29 -0.0
123,546 - Ac3H11_3440 0.29 -0.1
123,546 - Ac3H11_3440 0.29 -1.6
123,593 + Ac3H11_3440 0.35 +0.1
123,594 - Ac3H11_3440 0.35 +0.1
123,686 + Ac3H11_3440 0.48 +1.6
123,686 + Ac3H11_3440 0.48 -0.7
123,686 + Ac3H11_3440 0.48 -0.4
123,686 + Ac3H11_3440 0.48 -0.2
123,686 + Ac3H11_3440 0.48 +0.2
123,686 + Ac3H11_3440 0.48 -1.4
123,687 - Ac3H11_3440 0.48 +0.7
123,687 - Ac3H11_3440 0.48 +0.4
123,687 - Ac3H11_3440 0.48 -0.2
123,687 - Ac3H11_3440 0.48 -1.2
123,687 - Ac3H11_3440 0.48 -0.3
123,779 + Ac3H11_3440 0.61 -1.0
123,872 + Ac3H11_3440 0.74 +0.8
123,872 + Ac3H11_3440 0.74 -0.9
123,872 + Ac3H11_3440 0.74 -0.9
123,872 + Ac3H11_3440 0.74 +0.7
123,872 + Ac3H11_3440 0.74 -0.3
123,873 - Ac3H11_3440 0.74 -0.7
123,896 + Ac3H11_3440 0.77 -1.1
123,897 - Ac3H11_3440 0.77 -1.9
123,902 + Ac3H11_3440 0.78 +0.1
123,902 + Ac3H11_3440 0.78 -0.5
123,902 + Ac3H11_3440 0.78 -1.3
123,902 + Ac3H11_3440 0.78 -1.9
123,902 + Ac3H11_3440 0.78 -0.9
123,902 + Ac3H11_3440 0.78 -1.8
123,902 + Ac3H11_3440 0.78 -1.1
123,902 + Ac3H11_3440 0.78 -0.1
123,902 + Ac3H11_3440 0.78 -0.3
123,902 + Ac3H11_3440 0.78 -0.5
123,902 + Ac3H11_3440 0.78 +0.9
123,902 + Ac3H11_3440 0.78 -1.3
123,902 + Ac3H11_3440 0.78 -2.2
123,902 + Ac3H11_3440 0.78 -1.4
123,903 - Ac3H11_3440 0.78 -0.1
123,903 - Ac3H11_3440 0.78 -0.5
123,903 - Ac3H11_3440 0.78 -1.4
123,903 - Ac3H11_3440 0.78 +0.2
123,903 - Ac3H11_3440 0.78 -0.7
123,903 - Ac3H11_3440 0.78 -1.0
123,903 - Ac3H11_3440 0.78 -0.2
123,903 - Ac3H11_3440 0.78 +0.8
123,903 - Ac3H11_3440 0.78 +0.8
124,273 + Ac3H11_3441 0.12 +0.0
124,273 + Ac3H11_3441 0.12 -0.1
124,358 + Ac3H11_3441 0.19 +0.2
124,358 + Ac3H11_3441 0.19 +0.5
124,358 + Ac3H11_3441 0.19 +0.9
124,358 + Ac3H11_3441 0.19 -0.9
124,358 + Ac3H11_3441 0.19 +0.1
124,358 + Ac3H11_3441 0.19 +0.2
124,358 + Ac3H11_3441 0.19 -2.0
124,358 + Ac3H11_3441 0.19 +0.5
124,358 + Ac3H11_3441 0.19 +0.7
124,358 + Ac3H11_3441 0.19 -0.0
124,358 + Ac3H11_3441 0.19 +0.6
124,359 - Ac3H11_3441 0.19 -0.0
124,359 - Ac3H11_3441 0.19 +0.1
124,359 - Ac3H11_3441 0.19 +0.0
124,359 - Ac3H11_3441 0.19 +0.0
124,359 - Ac3H11_3441 0.19 +0.0
124,367 + Ac3H11_3441 0.20 -0.4
124,675 + Ac3H11_3441 0.46 -0.6
124,676 - Ac3H11_3441 0.46 -0.2
125,315 - +0.5
125,399 + +0.6
125,399 + +2.6
125,399 + -1.6
125,399 + -0.3
125,399 + -0.2
125,400 - -0.5
125,400 - +0.5
125,441 + -0.5
125,582 + Ac3H11_3442 0.23 +1.3
125,582 + Ac3H11_3442 0.23 +0.8
125,582 + Ac3H11_3442 0.23 -1.0
125,582 + Ac3H11_3442 0.23 +0.4
125,583 - Ac3H11_3442 0.23 -0.7
125,583 - Ac3H11_3442 0.23 -0.9
125,627 + Ac3H11_3442 0.29 -1.4
125,627 + Ac3H11_3442 0.29 -1.2
125,627 + Ac3H11_3442 0.29 +0.6
125,627 + Ac3H11_3442 0.29 +0.7
125,627 + Ac3H11_3442 0.29 +1.3
125,628 - Ac3H11_3442 0.29 +1.0
125,628 - Ac3H11_3442 0.29 -0.1
125,911 - Ac3H11_3442 0.64 +0.3
125,933 - Ac3H11_3442 0.67 +0.8
125,933 - Ac3H11_3442 0.67 +1.0
125,933 - +2.7
126,145 + +0.1
126,186 + -0.8
126,186 + -0.5
126,186 + -0.6
126,186 + -1.6
126,187 - +0.0
126,187 - +0.5
126,227 + Ac3H11_3443 0.15 -0.2
126,227 + Ac3H11_3443 0.15 -1.0
126,227 + Ac3H11_3443 0.15 -0.6
126,227 + Ac3H11_3443 0.15 +0.3
126,227 + Ac3H11_3443 0.15 +0.1
126,227 + Ac3H11_3443 0.15 -1.0
126,227 + Ac3H11_3443 0.15 -1.7
126,227 + Ac3H11_3443 0.15 +0.7
126,227 + Ac3H11_3443 0.15 -0.7
126,227 + Ac3H11_3443 0.15 -1.5
126,227 + Ac3H11_3443 0.15 -0.0
126,228 - Ac3H11_3443 0.15 -1.0
126,228 - Ac3H11_3443 0.15 -0.8
126,228 - Ac3H11_3443 0.15 +1.1
126,228 - Ac3H11_3443 0.15 -0.9
126,295 + Ac3H11_3443 0.47 -1.3
126,296 - Ac3H11_3443 0.47 -0.1
126,296 - Ac3H11_3443 0.47 -0.2

Or see this region's nucleotide sequence