Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3106

Experiment: Sisomicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3105 and Ac3H11_3106 are separated by 205 nucleotidesAc3H11_3106 and Ac3H11_3107 are separated by 189 nucleotides Ac3H11_3105 - MFS general substrate transporter, at 4,886 to 6,157 _3105 Ac3H11_3106 - FIG00348192: hypothetical protein, at 6,363 to 7,928 _3106 Ac3H11_3107 - FIG01209725: hypothetical protein, at 8,118 to 9,338 _3107 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 5.408 kb on + strand, within Ac3H11_3105at 5.409 kb on - strand, within Ac3H11_3105at 5.409 kb on - strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.436 kb on - strand, within Ac3H11_3105at 5.436 kb on - strand, within Ac3H11_3105at 5.436 kb on - strand, within Ac3H11_3105at 5.651 kb on + strand, within Ac3H11_3105at 5.651 kb on + strand, within Ac3H11_3105at 5.651 kb on + strand, within Ac3H11_3105at 5.651 kb on + strand, within Ac3H11_3105at 5.651 kb on + strand, within Ac3H11_3105at 5.651 kb on + strand, within Ac3H11_3105at 5.651 kb on + strand, within Ac3H11_3105at 5.652 kb on - strand, within Ac3H11_3105at 5.652 kb on - strand, within Ac3H11_3105at 5.652 kb on - strand, within Ac3H11_3105at 5.738 kb on + strand, within Ac3H11_3105at 5.739 kb on - strand, within Ac3H11_3105at 5.897 kb on + strand, within Ac3H11_3105at 5.897 kb on + strand, within Ac3H11_3105at 5.897 kb on + strand, within Ac3H11_3105at 5.897 kb on + strand, within Ac3H11_3105at 5.897 kb on + strand, within Ac3H11_3105at 5.898 kb on - strand, within Ac3H11_3105at 5.898 kb on - strand, within Ac3H11_3105at 5.898 kb on - strand, within Ac3H11_3105at 6.079 kb on - strandat 6.203 kb on + strandat 6.203 kb on + strandat 6.237 kb on - strandat 6.237 kb on - strandat 6.792 kb on + strand, within Ac3H11_3106at 6.892 kb on - strand, within Ac3H11_3106at 6.950 kb on + strand, within Ac3H11_3106at 6.979 kb on - strand, within Ac3H11_3106at 6.979 kb on - strand, within Ac3H11_3106at 6.979 kb on - strand, within Ac3H11_3106at 7.182 kb on + strand, within Ac3H11_3106at 7.182 kb on + strand, within Ac3H11_3106at 7.182 kb on + strand, within Ac3H11_3106at 7.183 kb on - strand, within Ac3H11_3106at 7.183 kb on - strand, within Ac3H11_3106at 7.509 kb on + strand, within Ac3H11_3106at 7.509 kb on + strand, within Ac3H11_3106at 7.510 kb on - strand, within Ac3H11_3106at 7.510 kb on - strand, within Ac3H11_3106at 7.605 kb on + strand, within Ac3H11_3106at 7.809 kb on + strandat 7.809 kb on + strandat 7.809 kb on + strandat 7.810 kb on - strandat 7.810 kb on - strandat 8.283 kb on + strand, within Ac3H11_3107at 8.283 kb on + strand, within Ac3H11_3107at 8.283 kb on + strand, within Ac3H11_3107at 8.283 kb on + strand, within Ac3H11_3107at 8.284 kb on - strand, within Ac3H11_3107at 8.284 kb on - strand, within Ac3H11_3107at 8.286 kb on + strand, within Ac3H11_3107at 8.286 kb on + strand, within Ac3H11_3107at 8.286 kb on + strand, within Ac3H11_3107at 8.289 kb on + strand, within Ac3H11_3107at 8.730 kb on + strand, within Ac3H11_3107at 8.731 kb on - strand, within Ac3H11_3107at 8.731 kb on - strand, within Ac3H11_3107

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.0005 mg/ml
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5,408 + Ac3H11_3105 0.41 +0.2
5,409 - Ac3H11_3105 0.41 -0.7
5,409 - Ac3H11_3105 0.41 +1.5
5,435 + Ac3H11_3105 0.43 -1.3
5,435 + Ac3H11_3105 0.43 -0.3
5,435 + Ac3H11_3105 0.43 -0.5
5,435 + Ac3H11_3105 0.43 +0.0
5,435 + Ac3H11_3105 0.43 -0.1
5,435 + Ac3H11_3105 0.43 -1.6
5,435 + Ac3H11_3105 0.43 -0.8
5,436 - Ac3H11_3105 0.43 +0.8
5,436 - Ac3H11_3105 0.43 -2.6
5,436 - Ac3H11_3105 0.43 +1.7
5,651 + Ac3H11_3105 0.60 -0.4
5,651 + Ac3H11_3105 0.60 +0.1
5,651 + Ac3H11_3105 0.60 -0.8
5,651 + Ac3H11_3105 0.60 -0.8
5,651 + Ac3H11_3105 0.60 -0.9
5,651 + Ac3H11_3105 0.60 +1.1
5,651 + Ac3H11_3105 0.60 +2.0
5,652 - Ac3H11_3105 0.60 -1.1
5,652 - Ac3H11_3105 0.60 +0.1
5,652 - Ac3H11_3105 0.60 -0.3
5,738 + Ac3H11_3105 0.67 -0.5
5,739 - Ac3H11_3105 0.67 +0.3
5,897 + Ac3H11_3105 0.79 +0.0
5,897 + Ac3H11_3105 0.79 -1.5
5,897 + Ac3H11_3105 0.79 +0.2
5,897 + Ac3H11_3105 0.79 +0.1
5,897 + Ac3H11_3105 0.79 -1.1
5,898 - Ac3H11_3105 0.80 -0.4
5,898 - Ac3H11_3105 0.80 -0.3
5,898 - Ac3H11_3105 0.80 +0.6
6,079 - +0.7
6,203 + +1.4
6,203 + -2.6
6,237 - -1.1
6,237 - +0.7
6,792 + Ac3H11_3106 0.27 -1.6
6,892 - Ac3H11_3106 0.34 -0.1
6,950 + Ac3H11_3106 0.37 -0.3
6,979 - Ac3H11_3106 0.39 -0.1
6,979 - Ac3H11_3106 0.39 -0.7
6,979 - Ac3H11_3106 0.39 +0.8
7,182 + Ac3H11_3106 0.52 -0.1
7,182 + Ac3H11_3106 0.52 -0.7
7,182 + Ac3H11_3106 0.52 +0.2
7,183 - Ac3H11_3106 0.52 +0.6
7,183 - Ac3H11_3106 0.52 +0.6
7,509 + Ac3H11_3106 0.73 -0.4
7,509 + Ac3H11_3106 0.73 +0.4
7,510 - Ac3H11_3106 0.73 -0.4
7,510 - Ac3H11_3106 0.73 +0.7
7,605 + Ac3H11_3106 0.79 -1.3
7,809 + -0.6
7,809 + -0.0
7,809 + -0.4
7,810 - +0.4
7,810 - +1.5
8,283 + Ac3H11_3107 0.14 -0.3
8,283 + Ac3H11_3107 0.14 +0.1
8,283 + Ac3H11_3107 0.14 -0.4
8,283 + Ac3H11_3107 0.14 -0.3
8,284 - Ac3H11_3107 0.14 +0.9
8,284 - Ac3H11_3107 0.14 -0.6
8,286 + Ac3H11_3107 0.14 -0.8
8,286 + Ac3H11_3107 0.14 +0.1
8,286 + Ac3H11_3107 0.14 +0.3
8,289 + Ac3H11_3107 0.14 -0.3
8,730 + Ac3H11_3107 0.50 -0.2
8,731 - Ac3H11_3107 0.50 +0.5
8,731 - Ac3H11_3107 0.50 +0.8

Or see this region's nucleotide sequence