Experiment: Sisomicin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3022 and Ac3H11_3023 are separated by 192 nucleotides Ac3H11_3023 and Ac3H11_3024 are separated by 304 nucleotides Ac3H11_3024 and Ac3H11_3025 are separated by 90 nucleotides
Ac3H11_3022 - putative sugar transport protein, at 43,439 to 45,070
_3022
Ac3H11_3023 - FIG00347684: hypothetical protein, at 45,263 to 45,466
_3023
Ac3H11_3024 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 45,771 to 46,889
_3024
Ac3H11_3025 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 46,980 to 48,098
_3025
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 44.789 kb on + strand, within Ac3H11_3022 at 44.816 kb on + strand, within Ac3H11_3022 at 44.816 kb on + strand, within Ac3H11_3022 at 44.816 kb on + strand, within Ac3H11_3022 at 44.817 kb on - strand, within Ac3H11_3022 at 44.867 kb on + strand, within Ac3H11_3022 at 44.867 kb on + strand, within Ac3H11_3022 at 44.889 kb on - strand, within Ac3H11_3022 at 44.966 kb on + strand at 44.966 kb on + strand at 44.966 kb on + strand at 44.966 kb on + strand at 44.966 kb on + strand at 44.966 kb on + strand at 44.966 kb on + strand at 44.966 kb on + strand at 44.967 kb on - strand at 44.967 kb on - strand at 44.967 kb on - strand at 44.967 kb on - strand at 44.967 kb on - strand at 44.967 kb on - strand at 44.967 kb on - strand at 44.967 kb on - strand at 44.967 kb on - strand at 44.967 kb on - strand at 44.967 kb on - strand at 44.967 kb on - strand at 44.967 kb on - strand at 44.982 kb on - strand at 45.056 kb on + strand at 45.056 kb on + strand at 45.056 kb on + strand at 45.056 kb on + strand at 45.056 kb on + strand at 45.056 kb on + strand at 45.056 kb on + strand at 45.056 kb on + strand at 45.056 kb on + strand at 45.057 kb on - strand at 45.057 kb on - strand at 45.057 kb on - strand at 45.057 kb on - strand at 45.187 kb on + strand at 45.187 kb on + strand at 45.187 kb on + strand at 45.188 kb on - strand at 45.188 kb on - strand at 45.188 kb on - strand at 45.243 kb on - strand at 45.243 kb on - strand at 45.311 kb on + strand, within Ac3H11_3023 at 45.311 kb on + strand, within Ac3H11_3023 at 45.311 kb on + strand, within Ac3H11_3023 at 45.311 kb on + strand, within Ac3H11_3023 at 45.311 kb on + strand, within Ac3H11_3023 at 45.311 kb on + strand, within Ac3H11_3023 at 45.311 kb on + strand, within Ac3H11_3023 at 45.312 kb on - strand, within Ac3H11_3023 at 45.312 kb on - strand, within Ac3H11_3023 at 45.312 kb on - strand, within Ac3H11_3023 at 45.312 kb on - strand, within Ac3H11_3023 at 45.312 kb on - strand, within Ac3H11_3023 at 45.312 kb on - strand, within Ac3H11_3023 at 45.312 kb on - strand, within Ac3H11_3023 at 45.312 kb on - strand, within Ac3H11_3023 at 45.312 kb on - strand, within Ac3H11_3023 at 45.464 kb on + strand at 45.610 kb on + strand at 45.611 kb on - strand at 45.611 kb on - strand at 45.611 kb on - strand at 45.714 kb on + strand at 45.772 kb on + strand at 45.772 kb on + strand at 45.772 kb on + strand at 45.772 kb on + strand at 45.847 kb on + strand at 45.847 kb on + strand at 45.847 kb on + strand at 45.848 kb on - strand at 45.848 kb on - strand at 45.848 kb on - strand at 45.848 kb on - strand at 45.848 kb on - strand at 46.048 kb on + strand, within Ac3H11_3024 at 46.048 kb on + strand, within Ac3H11_3024 at 46.268 kb on + strand, within Ac3H11_3024 at 46.276 kb on + strand, within Ac3H11_3024 at 46.276 kb on + strand, within Ac3H11_3024 at 46.277 kb on - strand, within Ac3H11_3024 at 46.480 kb on + strand, within Ac3H11_3024 at 46.480 kb on + strand, within Ac3H11_3024 at 46.480 kb on + strand, within Ac3H11_3024 at 46.480 kb on + strand, within Ac3H11_3024 at 46.481 kb on - strand, within Ac3H11_3024 at 46.481 kb on - strand, within Ac3H11_3024 at 46.481 kb on - strand, within Ac3H11_3024 at 46.481 kb on - strand, within Ac3H11_3024 at 46.481 kb on - strand, within Ac3H11_3024 at 46.481 kb on - strand, within Ac3H11_3024 at 46.736 kb on - strand, within Ac3H11_3024 at 46.906 kb on + strand at 46.906 kb on + strand at 46.906 kb on + strand at 46.906 kb on + strand at 46.907 kb on - strand at 46.907 kb on - strand at 46.923 kb on + strand at 46.923 kb on + strand at 46.923 kb on + strand at 46.923 kb on + strand at 46.923 kb on + strand at 46.924 kb on - strand at 46.924 kb on - strand at 46.950 kb on + strand at 46.950 kb on + strand at 46.950 kb on + strand at 46.951 kb on - strand at 47.039 kb on + strand at 47.112 kb on + strand, within Ac3H11_3025 at 47.112 kb on + strand, within Ac3H11_3025 at 47.112 kb on + strand, within Ac3H11_3025 at 47.112 kb on + strand, within Ac3H11_3025 at 47.112 kb on + strand, within Ac3H11_3025 at 47.113 kb on - strand, within Ac3H11_3025 at 47.113 kb on - strand, within Ac3H11_3025 at 47.257 kb on + strand, within Ac3H11_3025 at 47.258 kb on - strand, within Ac3H11_3025 at 47.596 kb on + strand, within Ac3H11_3025 at 47.596 kb on + strand, within Ac3H11_3025 at 47.596 kb on + strand, within Ac3H11_3025 at 47.596 kb on + strand, within Ac3H11_3025 at 47.596 kb on + strand, within Ac3H11_3025 at 47.597 kb on - strand, within Ac3H11_3025 at 47.597 kb on - strand, within Ac3H11_3025 at 47.665 kb on + strand, within Ac3H11_3025 at 47.665 kb on + strand, within Ac3H11_3025 at 47.665 kb on + strand, within Ac3H11_3025 at 47.665 kb on + strand, within Ac3H11_3025 at 47.666 kb on - strand, within Ac3H11_3025 at 47.666 kb on - strand, within Ac3H11_3025 at 47.666 kb on - strand, within Ac3H11_3025 at 47.666 kb on - strand, within Ac3H11_3025 at 47.689 kb on + strand, within Ac3H11_3025 at 47.689 kb on + strand, within Ac3H11_3025 at 47.689 kb on + strand, within Ac3H11_3025 at 47.689 kb on + strand, within Ac3H11_3025 at 47.689 kb on + strand, within Ac3H11_3025 at 47.689 kb on + strand, within Ac3H11_3025 at 47.689 kb on + strand, within Ac3H11_3025 at 47.689 kb on + strand, within Ac3H11_3025 at 47.689 kb on + strand, within Ac3H11_3025 at 47.689 kb on + strand, within Ac3H11_3025 at 47.689 kb on + strand, within Ac3H11_3025 at 47.690 kb on - strand, within Ac3H11_3025 at 47.690 kb on - strand, within Ac3H11_3025 at 47.690 kb on - strand, within Ac3H11_3025 at 47.690 kb on - strand, within Ac3H11_3025 at 47.690 kb on - strand, within Ac3H11_3025 at 47.690 kb on - strand, within Ac3H11_3025 at 47.690 kb on - strand, within Ac3H11_3025 at 47.690 kb on - strand, within Ac3H11_3025 at 47.690 kb on - strand, within Ac3H11_3025 at 47.690 kb on - strand, within Ac3H11_3025
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.0005 mg/ml remove 44,789 + Ac3H11_3022 0.83 +0.2 44,816 + Ac3H11_3022 0.84 +0.6 44,816 + Ac3H11_3022 0.84 +0.0 44,816 + Ac3H11_3022 0.84 -0.7 44,817 - Ac3H11_3022 0.84 -2.6 44,867 + Ac3H11_3022 0.88 +0.2 44,867 + Ac3H11_3022 0.88 -0.2 44,889 - Ac3H11_3022 0.89 -0.3 44,966 + -0.8 44,966 + +1.2 44,966 + +0.9 44,966 + +1.0 44,966 + -0.6 44,966 + +0.6 44,966 + +0.2 44,966 + -0.8 44,967 - -0.6 44,967 - -0.6 44,967 - -0.7 44,967 - -0.7 44,967 - -0.1 44,967 - -0.5 44,967 - -0.3 44,967 - +1.1 44,967 - +0.1 44,967 - +0.6 44,967 - -0.7 44,967 - -1.0 44,967 - -1.3 44,982 - -0.5 45,056 + -0.4 45,056 + +0.3 45,056 + +0.1 45,056 + -0.1 45,056 + -1.4 45,056 + -0.8 45,056 + -0.1 45,056 + -1.2 45,056 + -0.4 45,057 - +0.3 45,057 - +0.5 45,057 - +0.4 45,057 - +0.7 45,187 + -0.3 45,187 + -0.6 45,187 + +0.7 45,188 - -0.1 45,188 - +0.2 45,188 - -0.4 45,243 - +1.2 45,243 - -0.2 45,311 + Ac3H11_3023 0.24 +0.3 45,311 + Ac3H11_3023 0.24 +0.9 45,311 + Ac3H11_3023 0.24 +0.2 45,311 + Ac3H11_3023 0.24 -1.0 45,311 + Ac3H11_3023 0.24 -0.0 45,311 + Ac3H11_3023 0.24 +0.5 45,311 + Ac3H11_3023 0.24 +0.2 45,312 - Ac3H11_3023 0.24 +0.3 45,312 - Ac3H11_3023 0.24 -0.6 45,312 - Ac3H11_3023 0.24 +0.7 45,312 - Ac3H11_3023 0.24 -0.4 45,312 - Ac3H11_3023 0.24 +0.2 45,312 - Ac3H11_3023 0.24 +0.6 45,312 - Ac3H11_3023 0.24 -1.2 45,312 - Ac3H11_3023 0.24 -1.1 45,312 - Ac3H11_3023 0.24 -0.5 45,464 + -0.2 45,610 + +0.6 45,611 - +0.2 45,611 - -0.1 45,611 - +0.1 45,714 + -1.2 45,772 + -0.1 45,772 + +0.5 45,772 + +0.0 45,772 + +0.1 45,847 + +0.9 45,847 + +0.7 45,847 + -0.6 45,848 - -0.4 45,848 - -0.8 45,848 - +0.9 45,848 - +0.3 45,848 - +0.7 46,048 + Ac3H11_3024 0.25 +0.5 46,048 + Ac3H11_3024 0.25 +1.5 46,268 + Ac3H11_3024 0.44 +0.3 46,276 + Ac3H11_3024 0.45 +0.2 46,276 + Ac3H11_3024 0.45 -1.2 46,277 - Ac3H11_3024 0.45 -1.1 46,480 + Ac3H11_3024 0.63 +0.4 46,480 + Ac3H11_3024 0.63 +0.6 46,480 + Ac3H11_3024 0.63 +1.0 46,480 + Ac3H11_3024 0.63 +0.3 46,481 - Ac3H11_3024 0.63 +1.4 46,481 - Ac3H11_3024 0.63 +0.8 46,481 - Ac3H11_3024 0.63 +0.3 46,481 - Ac3H11_3024 0.63 +0.5 46,481 - Ac3H11_3024 0.63 -0.2 46,481 - Ac3H11_3024 0.63 +2.0 46,736 - Ac3H11_3024 0.86 -0.8 46,906 + -0.3 46,906 + -0.7 46,906 + +1.1 46,906 + +0.7 46,907 - -0.8 46,907 - -1.5 46,923 + +0.8 46,923 + -1.4 46,923 + +0.0 46,923 + -0.1 46,923 + +0.5 46,924 - +0.9 46,924 - -1.3 46,950 + +1.2 46,950 + -0.0 46,950 + +0.4 46,951 - -0.5 47,039 + +0.6 47,112 + Ac3H11_3025 0.12 -0.2 47,112 + Ac3H11_3025 0.12 -0.6 47,112 + Ac3H11_3025 0.12 +1.2 47,112 + Ac3H11_3025 0.12 -0.5 47,112 + Ac3H11_3025 0.12 +0.3 47,113 - Ac3H11_3025 0.12 +0.4 47,113 - Ac3H11_3025 0.12 +0.5 47,257 + Ac3H11_3025 0.25 +0.5 47,258 - Ac3H11_3025 0.25 -0.5 47,596 + Ac3H11_3025 0.55 -0.1 47,596 + Ac3H11_3025 0.55 +0.1 47,596 + Ac3H11_3025 0.55 -1.1 47,596 + Ac3H11_3025 0.55 +0.6 47,596 + Ac3H11_3025 0.55 +0.7 47,597 - Ac3H11_3025 0.55 +0.2 47,597 - Ac3H11_3025 0.55 -2.8 47,665 + Ac3H11_3025 0.61 +0.3 47,665 + Ac3H11_3025 0.61 -0.0 47,665 + Ac3H11_3025 0.61 -0.7 47,665 + Ac3H11_3025 0.61 -1.7 47,666 - Ac3H11_3025 0.61 -0.8 47,666 - Ac3H11_3025 0.61 -0.0 47,666 - Ac3H11_3025 0.61 -0.2 47,666 - Ac3H11_3025 0.61 -0.4 47,689 + Ac3H11_3025 0.63 -0.3 47,689 + Ac3H11_3025 0.63 -0.5 47,689 + Ac3H11_3025 0.63 +0.3 47,689 + Ac3H11_3025 0.63 -0.3 47,689 + Ac3H11_3025 0.63 -0.3 47,689 + Ac3H11_3025 0.63 +0.6 47,689 + Ac3H11_3025 0.63 +0.4 47,689 + Ac3H11_3025 0.63 +1.3 47,689 + Ac3H11_3025 0.63 -0.1 47,689 + Ac3H11_3025 0.63 -0.1 47,689 + Ac3H11_3025 0.63 -0.3 47,690 - Ac3H11_3025 0.63 +0.2 47,690 - Ac3H11_3025 0.63 +0.7 47,690 - Ac3H11_3025 0.63 -0.1 47,690 - Ac3H11_3025 0.63 +0.9 47,690 - Ac3H11_3025 0.63 +0.1 47,690 - Ac3H11_3025 0.63 +0.4 47,690 - Ac3H11_3025 0.63 -0.1 47,690 - Ac3H11_3025 0.63 +0.2 47,690 - Ac3H11_3025 0.63 -0.1 47,690 - Ac3H11_3025 0.63 +0.4
Or see this region's nucleotide sequence