Experiment: Sisomicin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_238 and Ac3H11_239 are separated by 708 nucleotides Ac3H11_239 and Ac3H11_240 are separated by 292 nucleotides
Ac3H11_238 - Ferrichrome-iron receptor, at 52,946 to 55,129
_238
Ac3H11_239 - hypothetical protein, at 55,838 to 56,197
_239
Ac3H11_240 - hypothetical protein, at 56,490 to 57,179
_240
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.956 kb on + strand at 55.040 kb on + strand at 55.040 kb on + strand at 55.040 kb on + strand at 55.040 kb on + strand at 55.041 kb on - strand at 55.043 kb on + strand at 55.044 kb on - strand at 55.044 kb on - strand at 55.044 kb on - strand at 55.044 kb on - strand at 55.044 kb on - strand at 55.044 kb on - strand at 55.044 kb on - strand at 55.207 kb on - strand at 55.312 kb on - strand at 55.503 kb on + strand at 55.634 kb on + strand at 55.635 kb on - strand at 55.635 kb on - strand at 55.670 kb on - strand at 55.670 kb on - strand at 55.710 kb on + strand at 55.710 kb on + strand at 55.717 kb on + strand at 55.717 kb on + strand at 55.772 kb on - strand at 55.775 kb on + strand at 55.776 kb on - strand at 55.776 kb on - strand at 55.776 kb on - strand at 55.788 kb on + strand at 55.789 kb on - strand at 55.789 kb on - strand at 55.789 kb on - strand at 55.789 kb on - strand at 55.833 kb on + strand at 55.833 kb on + strand at 55.833 kb on + strand at 55.833 kb on + strand at 55.833 kb on + strand at 55.834 kb on - strand at 55.834 kb on - strand at 55.834 kb on - strand at 55.834 kb on - strand at 55.834 kb on - strand at 55.930 kb on - strand, within Ac3H11_239 at 56.079 kb on - strand, within Ac3H11_239 at 56.079 kb on - strand, within Ac3H11_239 at 56.093 kb on + strand, within Ac3H11_239 at 56.093 kb on + strand, within Ac3H11_239 at 56.094 kb on - strand, within Ac3H11_239 at 56.094 kb on - strand, within Ac3H11_239 at 56.116 kb on - strand, within Ac3H11_239 at 56.137 kb on - strand, within Ac3H11_239 at 56.137 kb on - strand, within Ac3H11_239 at 56.254 kb on - strand at 56.254 kb on - strand at 56.364 kb on + strand at 56.364 kb on + strand at 56.398 kb on + strand at 56.399 kb on - strand at 56.399 kb on - strand at 56.461 kb on - strand at 56.539 kb on + strand at 56.540 kb on - strand at 56.540 kb on - strand at 56.546 kb on + strand at 56.546 kb on + strand at 56.564 kb on - strand, within Ac3H11_240 at 56.564 kb on - strand, within Ac3H11_240 at 56.636 kb on - strand, within Ac3H11_240 at 56.636 kb on - strand, within Ac3H11_240 at 56.680 kb on + strand, within Ac3H11_240 at 56.819 kb on - strand, within Ac3H11_240 at 56.819 kb on - strand, within Ac3H11_240 at 56.821 kb on + strand, within Ac3H11_240 at 56.866 kb on + strand, within Ac3H11_240 at 56.866 kb on + strand, within Ac3H11_240 at 56.867 kb on - strand, within Ac3H11_240 at 56.915 kb on - strand, within Ac3H11_240 at 57.075 kb on + strand, within Ac3H11_240
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.0005 mg/ml remove 54,956 + +0.5 55,040 + -0.5 55,040 + +0.3 55,040 + +0.4 55,040 + +0.5 55,041 - +1.0 55,043 + -0.5 55,044 - -0.2 55,044 - +1.2 55,044 - -1.3 55,044 - -0.1 55,044 - -0.3 55,044 - +1.1 55,044 - -0.5 55,207 - -1.0 55,312 - +1.0 55,503 + -0.1 55,634 + -0.1 55,635 - -1.3 55,635 - +0.0 55,670 - -0.2 55,670 - +0.1 55,710 + +1.6 55,710 + +0.5 55,717 + +0.5 55,717 + -0.5 55,772 - +0.1 55,775 + -0.1 55,776 - -0.6 55,776 - +0.6 55,776 - -3.0 55,788 + -0.9 55,789 - -0.6 55,789 - -0.2 55,789 - -0.4 55,789 - -0.5 55,833 + +0.1 55,833 + -0.7 55,833 + -0.3 55,833 + +1.8 55,833 + -0.7 55,834 - -0.3 55,834 - -1.1 55,834 - -0.2 55,834 - -0.3 55,834 - +1.2 55,930 - Ac3H11_239 0.26 -0.4 56,079 - Ac3H11_239 0.67 -0.2 56,079 - Ac3H11_239 0.67 -0.4 56,093 + Ac3H11_239 0.71 -1.0 56,093 + Ac3H11_239 0.71 +0.9 56,094 - Ac3H11_239 0.71 -0.8 56,094 - Ac3H11_239 0.71 -0.2 56,116 - Ac3H11_239 0.77 +0.3 56,137 - Ac3H11_239 0.83 -1.4 56,137 - Ac3H11_239 0.83 +0.3 56,254 - +0.1 56,254 - +0.4 56,364 + -0.2 56,364 + -1.1 56,398 + +0.0 56,399 - -1.3 56,399 - +0.0 56,461 - +0.6 56,539 + +0.4 56,540 - -1.1 56,540 - -0.1 56,546 + +0.4 56,546 + -1.1 56,564 - Ac3H11_240 0.11 +1.7 56,564 - Ac3H11_240 0.11 +0.1 56,636 - Ac3H11_240 0.21 -1.2 56,636 - Ac3H11_240 0.21 +0.2 56,680 + Ac3H11_240 0.28 -0.3 56,819 - Ac3H11_240 0.48 -0.7 56,819 - Ac3H11_240 0.48 -0.1 56,821 + Ac3H11_240 0.48 -0.5 56,866 + Ac3H11_240 0.54 +0.6 56,866 + Ac3H11_240 0.54 -0.4 56,867 - Ac3H11_240 0.55 -0.8 56,915 - Ac3H11_240 0.62 -0.8 57,075 + Ac3H11_240 0.85 +1.1
Or see this region's nucleotide sequence