Experiment: Sisomicin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_229 and Ac3H11_230 overlap by 4 nucleotides Ac3H11_230 and Ac3H11_231 are separated by 26 nucleotides Ac3H11_231 and Ac3H11_232 are separated by 258 nucleotides
Ac3H11_229 - Hemin transport protein HmuS, at 42,659 to 43,786
_229
Ac3H11_230 - hypothetical protein, at 43,783 to 44,139
_230
Ac3H11_231 - TonB-dependent hemin , ferrichrome receptor, at 44,166 to 46,454
_231
Ac3H11_232 - Alkyl hydroperoxide reductase protein F (EC 1.6.4.-), at 46,713 to 48,290
_232
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 43.230 kb on + strand, within Ac3H11_229 at 43.231 kb on - strand, within Ac3H11_229 at 43.231 kb on - strand, within Ac3H11_229 at 44.021 kb on + strand, within Ac3H11_230 at 44.078 kb on + strand, within Ac3H11_230 at 44.216 kb on - strand at 44.293 kb on + strand at 44.359 kb on + strand at 44.359 kb on + strand at 44.360 kb on - strand at 44.467 kb on + strand, within Ac3H11_231 at 44.551 kb on + strand, within Ac3H11_231 at 44.905 kb on + strand, within Ac3H11_231 at 44.906 kb on - strand, within Ac3H11_231 at 44.942 kb on - strand, within Ac3H11_231 at 45.091 kb on + strand, within Ac3H11_231 at 45.091 kb on + strand, within Ac3H11_231 at 45.092 kb on - strand, within Ac3H11_231 at 45.092 kb on - strand, within Ac3H11_231 at 45.092 kb on - strand, within Ac3H11_231 at 45.092 kb on - strand, within Ac3H11_231 at 45.092 kb on - strand, within Ac3H11_231 at 45.200 kb on - strand, within Ac3H11_231 at 45.200 kb on - strand, within Ac3H11_231 at 45.211 kb on + strand, within Ac3H11_231 at 45.211 kb on + strand, within Ac3H11_231 at 45.292 kb on + strand, within Ac3H11_231 at 45.293 kb on - strand, within Ac3H11_231 at 45.293 kb on - strand, within Ac3H11_231 at 45.343 kb on + strand, within Ac3H11_231 at 45.343 kb on + strand, within Ac3H11_231 at 45.344 kb on - strand, within Ac3H11_231 at 45.344 kb on - strand, within Ac3H11_231 at 45.523 kb on + strand, within Ac3H11_231 at 45.666 kb on - strand, within Ac3H11_231 at 45.889 kb on + strand, within Ac3H11_231 at 45.889 kb on + strand, within Ac3H11_231 at 45.890 kb on - strand, within Ac3H11_231 at 45.949 kb on + strand, within Ac3H11_231 at 45.949 kb on + strand, within Ac3H11_231 at 45.982 kb on + strand, within Ac3H11_231 at 45.982 kb on + strand, within Ac3H11_231 at 45.982 kb on + strand, within Ac3H11_231 at 45.983 kb on - strand, within Ac3H11_231 at 45.983 kb on - strand, within Ac3H11_231 at 45.983 kb on - strand, within Ac3H11_231 at 46.487 kb on + strand at 46.487 kb on + strand at 46.488 kb on - strand at 46.488 kb on - strand at 46.597 kb on + strand at 46.597 kb on + strand at 46.597 kb on + strand at 46.667 kb on - strand at 46.677 kb on + strand at 46.677 kb on + strand at 47.005 kb on + strand, within Ac3H11_232 at 47.260 kb on + strand, within Ac3H11_232
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.0005 mg/ml remove 43,230 + Ac3H11_229 0.51 +0.3 43,231 - Ac3H11_229 0.51 +0.1 43,231 - Ac3H11_229 0.51 -0.5 44,021 + Ac3H11_230 0.67 -0.2 44,078 + Ac3H11_230 0.83 +0.2 44,216 - -0.5 44,293 + +0.1 44,359 + -1.4 44,359 + -0.2 44,360 - +1.8 44,467 + Ac3H11_231 0.13 -0.2 44,551 + Ac3H11_231 0.17 -0.6 44,905 + Ac3H11_231 0.32 -0.3 44,906 - Ac3H11_231 0.32 -0.3 44,942 - Ac3H11_231 0.34 -0.3 45,091 + Ac3H11_231 0.40 +0.0 45,091 + Ac3H11_231 0.40 +0.2 45,092 - Ac3H11_231 0.40 +0.5 45,092 - Ac3H11_231 0.40 -0.3 45,092 - Ac3H11_231 0.40 +0.4 45,092 - Ac3H11_231 0.40 -0.6 45,092 - Ac3H11_231 0.40 -0.4 45,200 - Ac3H11_231 0.45 -0.5 45,200 - Ac3H11_231 0.45 -1.4 45,211 + Ac3H11_231 0.46 +0.1 45,211 + Ac3H11_231 0.46 -0.6 45,292 + Ac3H11_231 0.49 +0.3 45,293 - Ac3H11_231 0.49 +0.3 45,293 - Ac3H11_231 0.49 -0.1 45,343 + Ac3H11_231 0.51 +0.9 45,343 + Ac3H11_231 0.51 -0.5 45,344 - Ac3H11_231 0.51 -0.7 45,344 - Ac3H11_231 0.51 -0.7 45,523 + Ac3H11_231 0.59 +0.6 45,666 - Ac3H11_231 0.66 -0.4 45,889 + Ac3H11_231 0.75 -3.0 45,889 + Ac3H11_231 0.75 -1.5 45,890 - Ac3H11_231 0.75 -0.2 45,949 + Ac3H11_231 0.78 -0.8 45,949 + Ac3H11_231 0.78 -0.0 45,982 + Ac3H11_231 0.79 +0.1 45,982 + Ac3H11_231 0.79 -0.8 45,982 + Ac3H11_231 0.79 -0.6 45,983 - Ac3H11_231 0.79 -0.9 45,983 - Ac3H11_231 0.79 +0.1 45,983 - Ac3H11_231 0.79 -0.1 46,487 + +0.9 46,487 + -0.1 46,488 - -0.7 46,488 - -0.0 46,597 + -0.1 46,597 + -0.3 46,597 + -1.1 46,667 - -1.4 46,677 + +0.1 46,677 + -0.8 47,005 + Ac3H11_232 0.19 +0.5 47,260 + Ac3H11_232 0.35 -0.2
Or see this region's nucleotide sequence