Experiment: Sisomicin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1954 and Ac3H11_1955 are separated by 119 nucleotides Ac3H11_1955 and Ac3H11_1956 are separated by 112 nucleotides Ac3H11_1956 and Ac3H11_1957 are separated by 1 nucleotides
Ac3H11_1954 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 167,560 to 168,459
_1954
Ac3H11_1955 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 168,579 to 169,478
_1955
Ac3H11_1956 - Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4), at 169,591 to 170,349
_1956
Ac3H11_1957 - Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4), at 170,351 to 171,016
_1957
Position (kb) 168
169
170 Strain fitness (log2 ratio) -2
-1
0
1
2 at 167.587 kb on - strand at 167.710 kb on + strand, within Ac3H11_1954 at 167.710 kb on + strand, within Ac3H11_1954 at 167.710 kb on + strand, within Ac3H11_1954 at 167.710 kb on + strand, within Ac3H11_1954 at 167.710 kb on + strand, within Ac3H11_1954 at 167.710 kb on + strand, within Ac3H11_1954 at 167.710 kb on + strand, within Ac3H11_1954 at 167.711 kb on - strand, within Ac3H11_1954 at 167.711 kb on - strand, within Ac3H11_1954 at 167.711 kb on - strand, within Ac3H11_1954 at 167.711 kb on - strand, within Ac3H11_1954 at 167.711 kb on - strand, within Ac3H11_1954 at 167.711 kb on - strand, within Ac3H11_1954 at 167.711 kb on - strand, within Ac3H11_1954 at 167.711 kb on - strand, within Ac3H11_1954 at 167.711 kb on - strand, within Ac3H11_1954 at 167.711 kb on - strand, within Ac3H11_1954 at 167.743 kb on + strand, within Ac3H11_1954 at 168.027 kb on + strand, within Ac3H11_1954 at 168.027 kb on + strand, within Ac3H11_1954 at 168.028 kb on - strand at 168.178 kb on + strand, within Ac3H11_1954 at 168.178 kb on + strand, within Ac3H11_1954 at 168.178 kb on + strand, within Ac3H11_1954 at 168.178 kb on + strand, within Ac3H11_1954 at 168.179 kb on - strand at 168.179 kb on - strand, within Ac3H11_1954 at 168.179 kb on - strand, within Ac3H11_1954 at 168.333 kb on + strand, within Ac3H11_1954 at 168.333 kb on + strand, within Ac3H11_1954 at 168.334 kb on - strand, within Ac3H11_1954 at 168.334 kb on - strand, within Ac3H11_1954 at 168.337 kb on + strand, within Ac3H11_1954 at 168.337 kb on + strand, within Ac3H11_1954 at 168.337 kb on + strand, within Ac3H11_1954 at 168.338 kb on - strand at 168.338 kb on - strand, within Ac3H11_1954 at 168.338 kb on - strand, within Ac3H11_1954 at 168.346 kb on + strand, within Ac3H11_1954 at 168.346 kb on + strand, within Ac3H11_1954 at 168.346 kb on + strand, within Ac3H11_1954 at 168.346 kb on + strand, within Ac3H11_1954 at 168.347 kb on - strand at 168.347 kb on - strand, within Ac3H11_1954 at 168.347 kb on - strand, within Ac3H11_1954 at 168.347 kb on - strand, within Ac3H11_1954 at 168.409 kb on + strand at 168.409 kb on + strand at 168.409 kb on + strand at 168.410 kb on - strand at 168.433 kb on + strand at 168.433 kb on + strand at 168.433 kb on + strand at 168.433 kb on + strand at 168.433 kb on + strand at 168.433 kb on + strand at 168.433 kb on + strand at 168.433 kb on + strand at 168.434 kb on - strand at 168.434 kb on - strand at 168.434 kb on - strand at 168.434 kb on - strand at 168.434 kb on - strand at 168.434 kb on - strand at 168.434 kb on - strand at 168.434 kb on - strand at 168.438 kb on + strand at 168.438 kb on + strand at 168.461 kb on + strand at 168.464 kb on + strand at 168.464 kb on + strand at 168.465 kb on - strand at 168.465 kb on - strand at 168.475 kb on - strand at 168.486 kb on + strand at 168.486 kb on + strand at 168.487 kb on - strand at 168.492 kb on + strand at 168.492 kb on + strand at 168.492 kb on + strand at 168.492 kb on + strand at 168.493 kb on - strand at 168.493 kb on - strand at 168.536 kb on - strand at 168.536 kb on - strand at 168.536 kb on - strand at 168.579 kb on - strand at 168.718 kb on - strand, within Ac3H11_1955 at 168.738 kb on + strand, within Ac3H11_1955 at 168.738 kb on + strand at 168.738 kb on + strand, within Ac3H11_1955 at 168.738 kb on + strand at 168.739 kb on - strand at 168.739 kb on - strand, within Ac3H11_1955 at 168.739 kb on - strand, within Ac3H11_1955 at 168.739 kb on - strand, within Ac3H11_1955 at 168.822 kb on + strand, within Ac3H11_1955 at 168.822 kb on + strand, within Ac3H11_1955 at 168.823 kb on - strand, within Ac3H11_1955 at 168.823 kb on - strand, within Ac3H11_1955 at 168.823 kb on - strand at 168.945 kb on + strand, within Ac3H11_1955 at 168.945 kb on + strand, within Ac3H11_1955 at 168.945 kb on + strand, within Ac3H11_1955 at 168.945 kb on + strand, within Ac3H11_1955 at 168.945 kb on + strand, within Ac3H11_1955 at 168.945 kb on + strand, within Ac3H11_1955 at 168.945 kb on + strand, within Ac3H11_1955 at 168.945 kb on + strand, within Ac3H11_1955 at 168.945 kb on + strand, within Ac3H11_1955 at 168.946 kb on - strand, within Ac3H11_1955 at 168.946 kb on - strand at 168.946 kb on - strand, within Ac3H11_1955 at 169.218 kb on + strand, within Ac3H11_1955 at 169.218 kb on + strand at 169.219 kb on - strand, within Ac3H11_1955 at 169.219 kb on - strand at 169.219 kb on - strand, within Ac3H11_1955 at 169.219 kb on - strand, within Ac3H11_1955 at 169.219 kb on - strand, within Ac3H11_1955 at 169.350 kb on + strand, within Ac3H11_1955 at 169.350 kb on + strand at 169.350 kb on + strand, within Ac3H11_1955 at 169.351 kb on - strand, within Ac3H11_1955 at 169.476 kb on + strand at 169.476 kb on + strand at 169.476 kb on + strand at 169.477 kb on - strand at 169.477 kb on - strand at 169.566 kb on + strand at 169.566 kb on + strand at 169.567 kb on - strand at 169.576 kb on + strand at 169.576 kb on + strand at 169.577 kb on - strand at 169.577 kb on - strand at 169.590 kb on + strand at 169.590 kb on + strand at 169.590 kb on + strand at 169.590 kb on + strand at 169.591 kb on - strand at 169.591 kb on - strand at 169.591 kb on - strand at 169.678 kb on + strand, within Ac3H11_1956 at 169.678 kb on + strand, within Ac3H11_1956 at 169.678 kb on + strand, within Ac3H11_1956 at 169.679 kb on - strand, within Ac3H11_1956 at 169.679 kb on - strand, within Ac3H11_1956 at 169.679 kb on - strand, within Ac3H11_1956 at 169.679 kb on - strand, within Ac3H11_1956 at 169.832 kb on + strand, within Ac3H11_1956 at 169.833 kb on - strand, within Ac3H11_1956 at 169.833 kb on - strand, within Ac3H11_1956 at 169.833 kb on - strand at 169.833 kb on - strand, within Ac3H11_1956 at 169.833 kb on - strand, within Ac3H11_1956 at 169.842 kb on + strand, within Ac3H11_1956 at 169.873 kb on + strand, within Ac3H11_1956 at 169.873 kb on + strand, within Ac3H11_1956 at 169.874 kb on - strand, within Ac3H11_1956 at 170.017 kb on + strand, within Ac3H11_1956 at 170.018 kb on - strand, within Ac3H11_1956 at 170.062 kb on + strand, within Ac3H11_1956 at 170.063 kb on - strand at 170.063 kb on - strand, within Ac3H11_1956 at 170.063 kb on - strand, within Ac3H11_1956 at 170.063 kb on - strand, within Ac3H11_1956 at 170.224 kb on + strand, within Ac3H11_1956 at 170.225 kb on - strand, within Ac3H11_1956 at 170.245 kb on + strand, within Ac3H11_1956 at 170.245 kb on + strand, within Ac3H11_1956 at 170.245 kb on + strand, within Ac3H11_1956 at 170.245 kb on + strand, within Ac3H11_1956 at 170.245 kb on + strand at 170.245 kb on + strand, within Ac3H11_1956 at 170.245 kb on + strand, within Ac3H11_1956 at 170.246 kb on - strand, within Ac3H11_1956 at 170.246 kb on - strand, within Ac3H11_1956 at 170.246 kb on - strand, within Ac3H11_1956 at 170.246 kb on - strand, within Ac3H11_1956 at 170.350 kb on + strand at 170.350 kb on + strand at 170.350 kb on + strand at 170.350 kb on + strand at 170.350 kb on + strand at 170.351 kb on - strand at 170.351 kb on - strand at 170.351 kb on - strand at 170.351 kb on - strand at 170.372 kb on + strand at 170.372 kb on + strand at 170.372 kb on + strand at 170.372 kb on + strand at 170.373 kb on - strand at 170.373 kb on - strand at 170.373 kb on - strand at 170.373 kb on - strand at 170.373 kb on - strand at 170.373 kb on - strand at 170.414 kb on + strand at 170.414 kb on + strand at 170.414 kb on + strand at 170.414 kb on + strand at 170.414 kb on + strand at 170.415 kb on - strand at 170.415 kb on - strand at 170.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.0005 mg/ml remove 167,587 - -0.1 167,710 + Ac3H11_1954 0.17 -1.6 167,710 + Ac3H11_1954 0.17 +0.3 167,710 + Ac3H11_1954 0.17 +1.5 167,710 + Ac3H11_1954 0.17 -0.4 167,710 + Ac3H11_1954 0.17 -0.4 167,710 + Ac3H11_1954 0.17 +0.7 167,710 + Ac3H11_1954 0.17 +1.2 167,711 - Ac3H11_1954 0.17 -1.7 167,711 - Ac3H11_1954 0.17 -1.0 167,711 - Ac3H11_1954 0.17 -0.6 167,711 - Ac3H11_1954 0.17 +0.6 167,711 - Ac3H11_1954 0.17 -1.3 167,711 - Ac3H11_1954 0.17 -1.8 167,711 - Ac3H11_1954 0.17 -0.8 167,711 - Ac3H11_1954 0.17 -1.0 167,711 - Ac3H11_1954 0.17 -1.0 167,711 - Ac3H11_1954 0.17 +1.4 167,743 + Ac3H11_1954 0.20 -1.2 168,027 + Ac3H11_1954 0.52 +0.0 168,027 + Ac3H11_1954 0.52 -1.3 168,028 - +1.4 168,178 + Ac3H11_1954 0.69 -0.3 168,178 + Ac3H11_1954 0.69 -0.8 168,178 + Ac3H11_1954 0.69 +0.7 168,178 + Ac3H11_1954 0.69 +0.5 168,179 - +0.4 168,179 - Ac3H11_1954 0.69 -2.6 168,179 - Ac3H11_1954 0.69 -2.0 168,333 + Ac3H11_1954 0.86 +0.8 168,333 + Ac3H11_1954 0.86 +0.1 168,334 - Ac3H11_1954 0.86 -0.1 168,334 - Ac3H11_1954 0.86 -0.1 168,337 + Ac3H11_1954 0.86 +0.6 168,337 + Ac3H11_1954 0.86 +0.2 168,337 + Ac3H11_1954 0.86 -0.0 168,338 - +1.1 168,338 - Ac3H11_1954 0.86 -0.0 168,338 - Ac3H11_1954 0.86 +0.7 168,346 + Ac3H11_1954 0.87 +0.2 168,346 + Ac3H11_1954 0.87 +0.1 168,346 + Ac3H11_1954 0.87 +1.1 168,346 + Ac3H11_1954 0.87 +0.4 168,347 - +2.3 168,347 - Ac3H11_1954 0.87 -1.3 168,347 - Ac3H11_1954 0.87 +0.1 168,347 - Ac3H11_1954 0.87 +2.7 168,409 + +0.4 168,409 + +1.2 168,409 + +1.0 168,410 - -0.3 168,433 + +0.0 168,433 + +0.2 168,433 + +0.1 168,433 + +0.5 168,433 + -0.8 168,433 + +1.0 168,433 + -0.6 168,433 + +1.0 168,434 - -1.4 168,434 - +1.1 168,434 - -1.8 168,434 - -1.2 168,434 - -0.3 168,434 - -1.5 168,434 - -1.3 168,434 - +1.1 168,438 + -0.4 168,438 + -0.9 168,461 + -0.4 168,464 + +0.1 168,464 + -0.3 168,465 - +0.4 168,465 - -0.1 168,475 - -1.4 168,486 + +0.2 168,486 + -0.4 168,487 - -1.5 168,492 + +0.8 168,492 + -1.0 168,492 + +0.3 168,492 + -2.2 168,493 - -2.0 168,493 - +1.4 168,536 - -0.6 168,536 - +0.4 168,536 - -0.8 168,579 - -0.6 168,718 - Ac3H11_1955 0.15 -0.6 168,738 + Ac3H11_1955 0.18 -0.5 168,738 + +0.4 168,738 + Ac3H11_1955 0.18 -1.6 168,738 + +1.1 168,739 - +2.4 168,739 - Ac3H11_1955 0.18 -0.5 168,739 - Ac3H11_1955 0.18 -1.1 168,739 - Ac3H11_1955 0.18 -1.4 168,822 + Ac3H11_1955 0.27 -1.1 168,822 + Ac3H11_1955 0.27 +0.5 168,823 - Ac3H11_1955 0.27 -2.4 168,823 - Ac3H11_1955 0.27 -1.6 168,823 - +0.1 168,945 + Ac3H11_1955 0.41 +0.1 168,945 + Ac3H11_1955 0.41 -1.3 168,945 + Ac3H11_1955 0.41 -0.9 168,945 + Ac3H11_1955 0.41 -0.8 168,945 + Ac3H11_1955 0.41 -1.1 168,945 + Ac3H11_1955 0.41 -0.3 168,945 + Ac3H11_1955 0.41 -1.8 168,945 + Ac3H11_1955 0.41 -0.1 168,945 + Ac3H11_1955 0.41 -0.3 168,946 - Ac3H11_1955 0.41 +0.2 168,946 - +0.4 168,946 - Ac3H11_1955 0.41 -1.9 169,218 + Ac3H11_1955 0.71 -1.1 169,218 + -0.6 169,219 - Ac3H11_1955 0.71 -0.2 169,219 - +1.1 169,219 - Ac3H11_1955 0.71 -1.2 169,219 - Ac3H11_1955 0.71 -1.8 169,219 - Ac3H11_1955 0.71 -1.4 169,350 + Ac3H11_1955 0.86 +0.1 169,350 + +0.1 169,350 + Ac3H11_1955 0.86 -1.1 169,351 - Ac3H11_1955 0.86 -1.4 169,476 + -1.4 169,476 + -2.1 169,476 + +0.2 169,477 - +1.1 169,477 - +0.1 169,566 + +0.4 169,566 + -0.6 169,567 - -1.1 169,576 + -0.1 169,576 + -0.7 169,577 - +0.9 169,577 - +0.1 169,590 + -1.4 169,590 + -0.6 169,590 + +0.7 169,590 + +1.7 169,591 - -1.2 169,591 - -1.5 169,591 - +1.1 169,678 + Ac3H11_1956 0.11 -2.0 169,678 + Ac3H11_1956 0.11 -0.5 169,678 + Ac3H11_1956 0.11 -1.7 169,679 - Ac3H11_1956 0.12 +0.2 169,679 - Ac3H11_1956 0.12 -1.2 169,679 - Ac3H11_1956 0.12 -0.8 169,679 - Ac3H11_1956 0.12 -1.1 169,832 + Ac3H11_1956 0.32 -0.3 169,833 - Ac3H11_1956 0.32 -0.8 169,833 - Ac3H11_1956 0.32 -0.5 169,833 - +0.4 169,833 - Ac3H11_1956 0.32 +0.7 169,833 - Ac3H11_1956 0.32 +0.3 169,842 + Ac3H11_1956 0.33 +0.4 169,873 + Ac3H11_1956 0.37 -1.6 169,873 + Ac3H11_1956 0.37 -1.1 169,874 - Ac3H11_1956 0.37 -0.5 170,017 + Ac3H11_1956 0.56 -2.1 170,018 - Ac3H11_1956 0.56 -0.6 170,062 + Ac3H11_1956 0.62 -0.5 170,063 - +0.7 170,063 - Ac3H11_1956 0.62 -0.2 170,063 - Ac3H11_1956 0.62 -0.4 170,063 - Ac3H11_1956 0.62 +1.5 170,224 + Ac3H11_1956 0.83 -1.2 170,225 - Ac3H11_1956 0.84 -0.6 170,245 + Ac3H11_1956 0.86 +0.1 170,245 + Ac3H11_1956 0.86 -0.9 170,245 + Ac3H11_1956 0.86 -1.3 170,245 + Ac3H11_1956 0.86 -1.1 170,245 + +0.1 170,245 + Ac3H11_1956 0.86 -1.3 170,245 + Ac3H11_1956 0.86 -1.1 170,246 - Ac3H11_1956 0.86 -2.4 170,246 - Ac3H11_1956 0.86 -1.3 170,246 - Ac3H11_1956 0.86 -1.0 170,246 - Ac3H11_1956 0.86 +0.2 170,350 + +0.4 170,350 + -2.3 170,350 + +1.8 170,350 + -0.6 170,350 + -1.0 170,351 - -0.5 170,351 - +1.5 170,351 - +0.2 170,351 - -0.8 170,372 + -0.2 170,372 + -1.6 170,372 + -0.8 170,372 + +0.4 170,373 - -1.3 170,373 - -1.1 170,373 - +1.2 170,373 - +2.7 170,373 - +0.4 170,373 - +0.4 170,414 + -0.8 170,414 + -1.4 170,414 + -1.0 170,414 + -0.3 170,414 + -0.6 170,415 - +0.1 170,415 - -1.0 170,415 - +1.7
Or see this region's nucleotide sequence