Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1675

Experiment: Sisomicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1674 and Ac3H11_1675 are separated by 146 nucleotidesAc3H11_1675 and Ac3H11_1676 are separated by 54 nucleotidesAc3H11_1676 and Ac3H11_1677 are separated by 147 nucleotides Ac3H11_1674 - GGDEF family protein, at 277,132 to 278,604 _1674 Ac3H11_1675 - ATP-dependent RNA helicase NGO0650, at 278,751 to 280,616 _1675 Ac3H11_1676 - hypothetical protein, at 280,671 to 280,865 _1676 Ac3H11_1677 - 3'-to-5' oligoribonuclease (orn), at 281,013 to 281,615 _1677 Position (kb) 278 279 280 281Strain fitness (log2 ratio) -2 -1 0 1at 277.763 kb on + strand, within Ac3H11_1674at 277.763 kb on + strand, within Ac3H11_1674at 277.763 kb on + strand, within Ac3H11_1674at 277.764 kb on - strand, within Ac3H11_1674at 277.764 kb on - strand, within Ac3H11_1674at 278.097 kb on - strand, within Ac3H11_1674at 278.197 kb on + strand, within Ac3H11_1674at 278.197 kb on + strand, within Ac3H11_1674at 278.198 kb on - strand, within Ac3H11_1674at 278.198 kb on - strand, within Ac3H11_1674at 278.198 kb on - strand, within Ac3H11_1674at 278.198 kb on - strand, within Ac3H11_1674at 278.243 kb on + strand, within Ac3H11_1674at 278.243 kb on + strand, within Ac3H11_1674at 278.243 kb on + strand, within Ac3H11_1674at 278.243 kb on + strand, within Ac3H11_1674at 278.244 kb on - strand, within Ac3H11_1674at 278.244 kb on - strand, within Ac3H11_1674at 278.244 kb on - strand, within Ac3H11_1674at 278.244 kb on - strand, within Ac3H11_1674at 278.244 kb on - strand, within Ac3H11_1674at 278.470 kb on + strandat 278.470 kb on + strandat 278.470 kb on + strandat 278.470 kb on + strandat 278.470 kb on + strandat 278.470 kb on + strandat 278.470 kb on + strandat 278.470 kb on + strandat 278.470 kb on + strandat 278.470 kb on + strandat 278.470 kb on + strandat 278.470 kb on + strandat 278.470 kb on + strandat 278.470 kb on + strandat 278.471 kb on - strandat 278.471 kb on - strandat 278.471 kb on - strandat 278.471 kb on - strandat 278.471 kb on - strandat 278.471 kb on - strandat 278.471 kb on - strandat 278.471 kb on - strandat 278.471 kb on - strandat 278.471 kb on - strandat 278.471 kb on - strandat 278.471 kb on - strandat 278.471 kb on - strandat 278.471 kb on - strandat 278.471 kb on - strandat 278.573 kb on + strandat 278.627 kb on + strandat 278.628 kb on - strandat 278.663 kb on + strandat 278.664 kb on - strandat 278.935 kb on + strandat 278.936 kb on - strandat 279.136 kb on + strand, within Ac3H11_1675at 279.137 kb on - strand, within Ac3H11_1675at 280.677 kb on - strandat 280.746 kb on - strand, within Ac3H11_1676at 280.746 kb on - strand, within Ac3H11_1676at 280.771 kb on + strand, within Ac3H11_1676at 280.862 kb on - strandat 280.889 kb on + strandat 280.889 kb on + strandat 280.930 kb on + strandat 280.931 kb on - strandat 281.126 kb on + strand, within Ac3H11_1677at 281.127 kb on - strand, within Ac3H11_1677at 281.127 kb on - strand, within Ac3H11_1677at 281.127 kb on - strand, within Ac3H11_1677at 281.128 kb on + strand, within Ac3H11_1677at 281.128 kb on + strand, within Ac3H11_1677at 281.128 kb on + strand, within Ac3H11_1677at 281.128 kb on + strand, within Ac3H11_1677at 281.128 kb on + strand, within Ac3H11_1677at 281.128 kb on + strandat 281.129 kb on - strand, within Ac3H11_1677at 281.129 kb on - strand, within Ac3H11_1677at 281.129 kb on - strand, within Ac3H11_1677at 281.129 kb on - strand, within Ac3H11_1677at 281.129 kb on - strandat 281.188 kb on + strand, within Ac3H11_1677at 281.189 kb on - strand, within Ac3H11_1677at 281.210 kb on + strand, within Ac3H11_1677at 281.210 kb on + strand, within Ac3H11_1677at 281.210 kb on + strand, within Ac3H11_1677at 281.211 kb on - strand, within Ac3H11_1677at 281.211 kb on - strand, within Ac3H11_1677at 281.211 kb on - strand, within Ac3H11_1677at 281.211 kb on - strand, within Ac3H11_1677at 281.211 kb on - strand, within Ac3H11_1677at 281.218 kb on + strand, within Ac3H11_1677at 281.218 kb on + strand, within Ac3H11_1677at 281.218 kb on + strand, within Ac3H11_1677at 281.218 kb on + strand, within Ac3H11_1677at 281.218 kb on + strand, within Ac3H11_1677at 281.219 kb on - strand, within Ac3H11_1677at 281.219 kb on - strand, within Ac3H11_1677at 281.219 kb on - strand, within Ac3H11_1677at 281.219 kb on - strand, within Ac3H11_1677at 281.219 kb on - strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.287 kb on + strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.288 kb on - strand, within Ac3H11_1677at 281.510 kb on + strand, within Ac3H11_1677at 281.510 kb on + strand, within Ac3H11_1677

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.0005 mg/ml
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277,763 + Ac3H11_1674 0.43 -1.1
277,763 + Ac3H11_1674 0.43 -0.3
277,763 + Ac3H11_1674 0.43 -0.1
277,764 - Ac3H11_1674 0.43 +0.1
277,764 - Ac3H11_1674 0.43 -1.4
278,097 - Ac3H11_1674 0.66 +0.8
278,197 + Ac3H11_1674 0.72 -0.0
278,197 + Ac3H11_1674 0.72 -0.4
278,198 - Ac3H11_1674 0.72 -0.6
278,198 - Ac3H11_1674 0.72 +0.6
278,198 - Ac3H11_1674 0.72 -0.4
278,198 - Ac3H11_1674 0.72 -0.7
278,243 + Ac3H11_1674 0.75 +0.8
278,243 + Ac3H11_1674 0.75 +0.5
278,243 + Ac3H11_1674 0.75 +0.1
278,243 + Ac3H11_1674 0.75 +1.4
278,244 - Ac3H11_1674 0.75 +1.0
278,244 - Ac3H11_1674 0.75 -0.1
278,244 - Ac3H11_1674 0.75 +0.2
278,244 - Ac3H11_1674 0.75 +1.0
278,244 - Ac3H11_1674 0.75 +0.0
278,470 + +0.6
278,470 + +0.5
278,470 + -0.4
278,470 + +0.6
278,470 + -1.6
278,470 + +0.7
278,470 + +0.8
278,470 + +0.6
278,470 + -0.3
278,470 + +0.0
278,470 + +1.4
278,470 + -0.4
278,470 + +0.1
278,470 + +0.2
278,471 - +0.2
278,471 - +0.2
278,471 - +0.3
278,471 - +0.1
278,471 - +0.1
278,471 - +0.1
278,471 - +0.2
278,471 - +0.8
278,471 - +0.1
278,471 - -0.5
278,471 - -0.3
278,471 - -1.2
278,471 - -0.1
278,471 - +0.0
278,471 - +1.0
278,573 + +0.8
278,627 + +0.7
278,628 - +0.5
278,663 + -1.4
278,664 - +0.1
278,935 + -1.3
278,936 - -0.7
279,136 + Ac3H11_1675 0.21 -0.3
279,137 - Ac3H11_1675 0.21 +0.6
280,677 - +0.6
280,746 - Ac3H11_1676 0.38 -1.8
280,746 - Ac3H11_1676 0.38 -0.7
280,771 + Ac3H11_1676 0.51 -0.6
280,862 - +1.3
280,889 + -1.1
280,889 + -1.6
280,930 + -1.4
280,931 - +0.3
281,126 + Ac3H11_1677 0.19 -0.3
281,127 - Ac3H11_1677 0.19 -0.0
281,127 - Ac3H11_1677 0.19 -0.6
281,127 - Ac3H11_1677 0.19 -1.0
281,128 + Ac3H11_1677 0.19 +0.1
281,128 + Ac3H11_1677 0.19 +0.1
281,128 + Ac3H11_1677 0.19 -0.6
281,128 + Ac3H11_1677 0.19 +1.1
281,128 + Ac3H11_1677 0.19 +0.7
281,128 + +0.7
281,129 - Ac3H11_1677 0.19 -0.8
281,129 - Ac3H11_1677 0.19 +1.3
281,129 - Ac3H11_1677 0.19 +1.1
281,129 - Ac3H11_1677 0.19 +0.1
281,129 - +0.2
281,188 + Ac3H11_1677 0.29 -0.2
281,189 - Ac3H11_1677 0.29 +0.7
281,210 + Ac3H11_1677 0.33 -0.6
281,210 + Ac3H11_1677 0.33 +0.1
281,210 + Ac3H11_1677 0.33 -0.1
281,211 - Ac3H11_1677 0.33 +0.9
281,211 - Ac3H11_1677 0.33 -2.0
281,211 - Ac3H11_1677 0.33 -0.8
281,211 - Ac3H11_1677 0.33 +0.0
281,211 - Ac3H11_1677 0.33 -1.6
281,218 + Ac3H11_1677 0.34 -0.6
281,218 + Ac3H11_1677 0.34 -0.2
281,218 + Ac3H11_1677 0.34 -0.6
281,218 + Ac3H11_1677 0.34 -0.4
281,218 + Ac3H11_1677 0.34 +0.6
281,219 - Ac3H11_1677 0.34 -1.4
281,219 - Ac3H11_1677 0.34 +0.2
281,219 - Ac3H11_1677 0.34 -0.5
281,219 - Ac3H11_1677 0.34 -0.6
281,219 - Ac3H11_1677 0.34 -1.6
281,287 + Ac3H11_1677 0.45 +0.0
281,287 + Ac3H11_1677 0.45 -0.3
281,287 + Ac3H11_1677 0.45 -0.5
281,287 + Ac3H11_1677 0.45 +0.0
281,287 + Ac3H11_1677 0.45 +0.2
281,287 + Ac3H11_1677 0.45 +0.0
281,287 + Ac3H11_1677 0.45 -0.1
281,287 + Ac3H11_1677 0.45 -0.0
281,287 + Ac3H11_1677 0.45 +0.2
281,287 + Ac3H11_1677 0.45 -1.5
281,287 + Ac3H11_1677 0.45 -0.0
281,287 + Ac3H11_1677 0.45 -0.3
281,287 + Ac3H11_1677 0.45 -1.2
281,287 + Ac3H11_1677 0.45 -1.0
281,287 + Ac3H11_1677 0.45 -0.9
281,287 + Ac3H11_1677 0.45 +0.1
281,287 + Ac3H11_1677 0.45 -0.7
281,288 - Ac3H11_1677 0.46 -0.2
281,288 - Ac3H11_1677 0.46 +0.6
281,288 - Ac3H11_1677 0.46 -0.9
281,288 - Ac3H11_1677 0.46 +0.8
281,288 - Ac3H11_1677 0.46 -0.4
281,288 - Ac3H11_1677 0.46 +0.2
281,288 - Ac3H11_1677 0.46 -0.3
281,288 - Ac3H11_1677 0.46 -0.4
281,288 - Ac3H11_1677 0.46 +1.3
281,288 - Ac3H11_1677 0.46 +0.1
281,288 - Ac3H11_1677 0.46 +0.2
281,288 - Ac3H11_1677 0.46 -1.1
281,288 - Ac3H11_1677 0.46 +0.3
281,288 - Ac3H11_1677 0.46 +0.3
281,288 - Ac3H11_1677 0.46 -2.2
281,288 - Ac3H11_1677 0.46 -1.6
281,510 + Ac3H11_1677 0.82 -1.1
281,510 + Ac3H11_1677 0.82 +0.2

Or see this region's nucleotide sequence