Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31215

Experiment: benzoic 0.145 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31210 and AZOBR_RS31215 are separated by 38 nucleotides AZOBR_RS31210: AZOBR_RS31210 - sugar ABC transporter ATP-binding protein, at 365,508 to 367,058 _RS31210 AZOBR_RS31215: AZOBR_RS31215 - sugar ABC transporter substrate-binding protein, at 367,097 to 368,062 _RS31215 Position (kb) 367 368 369Strain fitness (log2 ratio) -1 0 1at 366.424 kb on + strand, within AZOBR_RS31210at 366.425 kb on - strand, within AZOBR_RS31210at 366.425 kb on - strand, within AZOBR_RS31210at 367.123 kb on - strandat 367.683 kb on + strand, within AZOBR_RS31215at 367.684 kb on - strand, within AZOBR_RS31215at 367.684 kb on - strand, within AZOBR_RS31215at 367.684 kb on - strand, within AZOBR_RS31215at 368.062 kb on + strandat 368.063 kb on - strandat 368.155 kb on - strandat 369.048 kb on + strandat 369.048 kb on + strandat 369.048 kb on + strandat 369.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.145 mg/ml
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366,424 + AZOBR_RS31210 0.59 +0.5
366,425 - AZOBR_RS31210 0.59 +0.4
366,425 - AZOBR_RS31210 0.59 +0.1
367,123 - -0.4
367,683 + AZOBR_RS31215 0.61 -0.0
367,684 - AZOBR_RS31215 0.61 +0.9
367,684 - AZOBR_RS31215 0.61 -0.6
367,684 - AZOBR_RS31215 0.61 +0.1
368,062 + +0.5
368,063 - -0.2
368,155 - -0.1
369,048 + +0.3
369,048 + -0.3
369,048 + -0.9
369,049 - -0.6

Or see this region's nucleotide sequence