Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23090

Experiment: benzoic 0.145 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23085 and AZOBR_RS23090 are separated by 192 nucleotidesAZOBR_RS23090 and AZOBR_RS23095 are separated by 113 nucleotides AZOBR_RS23085: AZOBR_RS23085 - type III effector Hrp-dependent outer protein, at 195,840 to 197,147 _RS23085 AZOBR_RS23090: AZOBR_RS23090 - Crp/Fnr family transcription regulator, at 197,340 to 198,071 _RS23090 AZOBR_RS23095: AZOBR_RS23095 - hypothetical protein, at 198,185 to 198,436 _RS23095 Position (kb) 197 198 199Strain fitness (log2 ratio) -2 -1 0 1at 196.402 kb on - strand, within AZOBR_RS23085at 196.750 kb on + strand, within AZOBR_RS23085at 196.941 kb on - strand, within AZOBR_RS23085at 197.204 kb on + strandat 197.205 kb on - strandat 197.214 kb on + strandat 197.214 kb on + strandat 197.214 kb on + strandat 197.214 kb on + strandat 197.236 kb on + strandat 197.237 kb on - strandat 197.237 kb on - strandat 197.258 kb on + strandat 197.273 kb on - strandat 197.273 kb on - strandat 197.665 kb on - strand, within AZOBR_RS23090at 197.670 kb on + strand, within AZOBR_RS23090at 197.671 kb on - strand, within AZOBR_RS23090at 198.152 kb on + strandat 198.153 kb on - strandat 198.153 kb on - strandat 198.673 kb on + strandat 198.673 kb on + strandat 198.673 kb on + strandat 198.674 kb on - strandat 198.674 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.145 mg/ml
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196,402 - AZOBR_RS23085 0.43 -0.2
196,750 + AZOBR_RS23085 0.70 +0.6
196,941 - AZOBR_RS23085 0.84 -0.3
197,204 + -0.3
197,205 - -2.1
197,214 + -0.2
197,214 + -2.6
197,214 + -0.0
197,214 + -0.6
197,236 + +0.9
197,237 - +0.4
197,237 - -0.3
197,258 + -0.2
197,273 - -0.1
197,273 - +0.3
197,665 - AZOBR_RS23090 0.44 -1.0
197,670 + AZOBR_RS23090 0.45 -1.5
197,671 - AZOBR_RS23090 0.45 -1.1
198,152 + -1.5
198,153 - +0.2
198,153 - +0.1
198,673 + +0.3
198,673 + -0.3
198,673 + -0.1
198,674 - -0.2
198,674 - -0.0

Or see this region's nucleotide sequence