Experiment: benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03240 and AZOBR_RS03245 are separated by 141 nucleotides AZOBR_RS03245 and AZOBR_RS03250 are separated by 65 nucleotides AZOBR_RS03250 and AZOBR_RS03255 are separated by 107 nucleotides
AZOBR_RS03240: AZOBR_RS03240 - recombinase XerD, at 687,802 to 688,683
_RS03240
AZOBR_RS03245: AZOBR_RS03245 - malate synthase, at 688,825 to 690,429
_RS03245
AZOBR_RS03250: AZOBR_RS03250 - hypothetical protein, at 690,495 to 690,929
_RS03250
AZOBR_RS03255: AZOBR_RS03255 - hypothetical protein, at 691,037 to 691,909
_RS03255
Position (kb) 688
689
690
691 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 687.907 kb on + strand, within AZOBR_RS03240 at 688.681 kb on + strand at 688.754 kb on - strand at 688.755 kb on + strand at 689.279 kb on - strand, within AZOBR_RS03245 at 689.398 kb on + strand, within AZOBR_RS03245 at 689.446 kb on + strand, within AZOBR_RS03245 at 689.452 kb on + strand, within AZOBR_RS03245 at 689.452 kb on + strand, within AZOBR_RS03245 at 689.452 kb on + strand, within AZOBR_RS03245 at 689.453 kb on - strand, within AZOBR_RS03245 at 689.521 kb on + strand, within AZOBR_RS03245 at 689.522 kb on - strand, within AZOBR_RS03245 at 689.522 kb on - strand, within AZOBR_RS03245 at 689.606 kb on - strand, within AZOBR_RS03245 at 689.606 kb on - strand, within AZOBR_RS03245 at 689.654 kb on - strand, within AZOBR_RS03245 at 689.749 kb on + strand, within AZOBR_RS03245 at 689.749 kb on + strand, within AZOBR_RS03245 at 689.749 kb on + strand, within AZOBR_RS03245 at 689.749 kb on + strand, within AZOBR_RS03245 at 689.750 kb on - strand, within AZOBR_RS03245 at 689.750 kb on - strand, within AZOBR_RS03245 at 689.815 kb on + strand, within AZOBR_RS03245 at 689.815 kb on + strand, within AZOBR_RS03245 at 689.815 kb on + strand, within AZOBR_RS03245 at 689.816 kb on - strand, within AZOBR_RS03245 at 689.816 kb on - strand, within AZOBR_RS03245 at 689.816 kb on - strand, within AZOBR_RS03245 at 689.816 kb on - strand, within AZOBR_RS03245 at 689.965 kb on + strand, within AZOBR_RS03245 at 689.965 kb on + strand, within AZOBR_RS03245 at 689.965 kb on + strand, within AZOBR_RS03245 at 689.965 kb on + strand, within AZOBR_RS03245 at 689.966 kb on - strand, within AZOBR_RS03245 at 689.966 kb on - strand, within AZOBR_RS03245 at 689.966 kb on - strand, within AZOBR_RS03245 at 689.966 kb on - strand, within AZOBR_RS03245 at 689.966 kb on - strand, within AZOBR_RS03245 at 689.966 kb on - strand, within AZOBR_RS03245 at 689.966 kb on - strand, within AZOBR_RS03245 at 690.325 kb on + strand at 690.400 kb on + strand at 690.401 kb on - strand at 690.462 kb on - strand at 690.462 kb on - strand at 690.462 kb on - strand at 690.819 kb on + strand, within AZOBR_RS03250 at 690.820 kb on - strand, within AZOBR_RS03250 at 690.820 kb on - strand, within AZOBR_RS03250 at 691.220 kb on + strand, within AZOBR_RS03255 at 691.229 kb on + strand, within AZOBR_RS03255 at 691.326 kb on - strand, within AZOBR_RS03255 at 691.326 kb on - strand, within AZOBR_RS03255 at 691.326 kb on - strand, within AZOBR_RS03255
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.145 mg/ml remove 687,907 + AZOBR_RS03240 0.12 -3.9 688,681 + -0.0 688,754 - -1.3 688,755 + -0.0 689,279 - AZOBR_RS03245 0.28 -0.7 689,398 + AZOBR_RS03245 0.36 +0.5 689,446 + AZOBR_RS03245 0.39 +0.3 689,452 + AZOBR_RS03245 0.39 -0.1 689,452 + AZOBR_RS03245 0.39 -0.1 689,452 + AZOBR_RS03245 0.39 -1.0 689,453 - AZOBR_RS03245 0.39 +0.5 689,521 + AZOBR_RS03245 0.43 -0.3 689,522 - AZOBR_RS03245 0.43 +2.0 689,522 - AZOBR_RS03245 0.43 -0.5 689,606 - AZOBR_RS03245 0.49 +0.4 689,606 - AZOBR_RS03245 0.49 +0.6 689,654 - AZOBR_RS03245 0.52 -1.2 689,749 + AZOBR_RS03245 0.58 -0.3 689,749 + AZOBR_RS03245 0.58 -0.5 689,749 + AZOBR_RS03245 0.58 +0.1 689,749 + AZOBR_RS03245 0.58 +0.1 689,750 - AZOBR_RS03245 0.58 -1.3 689,750 - AZOBR_RS03245 0.58 +0.2 689,815 + AZOBR_RS03245 0.62 +0.7 689,815 + AZOBR_RS03245 0.62 -0.0 689,815 + AZOBR_RS03245 0.62 +0.2 689,816 - AZOBR_RS03245 0.62 +0.0 689,816 - AZOBR_RS03245 0.62 -1.6 689,816 - AZOBR_RS03245 0.62 +0.1 689,816 - AZOBR_RS03245 0.62 -0.1 689,965 + AZOBR_RS03245 0.71 -0.2 689,965 + AZOBR_RS03245 0.71 +0.7 689,965 + AZOBR_RS03245 0.71 +1.3 689,965 + AZOBR_RS03245 0.71 -0.3 689,966 - AZOBR_RS03245 0.71 +0.0 689,966 - AZOBR_RS03245 0.71 +0.2 689,966 - AZOBR_RS03245 0.71 +0.0 689,966 - AZOBR_RS03245 0.71 +0.1 689,966 - AZOBR_RS03245 0.71 -0.4 689,966 - AZOBR_RS03245 0.71 +1.9 689,966 - AZOBR_RS03245 0.71 +0.0 690,325 + +1.1 690,400 + -0.3 690,401 - -0.2 690,462 - -0.1 690,462 - +0.0 690,462 - -0.0 690,819 + AZOBR_RS03250 0.74 -1.0 690,820 - AZOBR_RS03250 0.75 +0.2 690,820 - AZOBR_RS03250 0.75 -2.9 691,220 + AZOBR_RS03255 0.21 +1.1 691,229 + AZOBR_RS03255 0.22 -1.8 691,326 - AZOBR_RS03255 0.33 +0.8 691,326 - AZOBR_RS03255 0.33 +0.0 691,326 - AZOBR_RS03255 0.33 -0.5
Or see this region's nucleotide sequence