Experiment: benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03110 and AZOBR_RS03115 are separated by 88 nucleotides AZOBR_RS03115 and AZOBR_RS03120 are separated by 88 nucleotides AZOBR_RS03120 and AZOBR_RS03125 are separated by 14 nucleotides
AZOBR_RS03110: AZOBR_RS03110 - integration host factor subunit beta, at 664,483 to 664,767
_RS03110
AZOBR_RS03115: AZOBR_RS03115 - hypothetical protein, at 664,856 to 665,245
_RS03115
AZOBR_RS03120: AZOBR_RS03120 - ornithine cyclodeaminase, at 665,334 to 666,290
_RS03120
AZOBR_RS03125: AZOBR_RS03125 - FAD dependent oxidoreductase, at 666,305 to 667,417
_RS03125
Position (kb) 665
666
667 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 664.391 kb on + strand at 664.391 kb on + strand at 664.534 kb on + strand, within AZOBR_RS03110 at 664.534 kb on + strand at 664.535 kb on - strand, within AZOBR_RS03110 at 664.840 kb on + strand at 664.841 kb on - strand at 665.097 kb on - strand, within AZOBR_RS03115 at 665.097 kb on - strand, within AZOBR_RS03115 at 665.587 kb on - strand, within AZOBR_RS03120 at 665.688 kb on + strand, within AZOBR_RS03120 at 665.689 kb on - strand, within AZOBR_RS03120 at 666.148 kb on - strand, within AZOBR_RS03120 at 666.186 kb on + strand, within AZOBR_RS03120 at 666.464 kb on + strand, within AZOBR_RS03125 at 666.465 kb on - strand, within AZOBR_RS03125 at 666.974 kb on + strand, within AZOBR_RS03125 at 666.975 kb on - strand, within AZOBR_RS03125 at 667.055 kb on + strand, within AZOBR_RS03125 at 667.238 kb on + strand, within AZOBR_RS03125 at 667.238 kb on + strand, within AZOBR_RS03125 at 667.238 kb on + strand, within AZOBR_RS03125 at 667.239 kb on - strand, within AZOBR_RS03125 at 667.239 kb on - strand, within AZOBR_RS03125
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.145 mg/ml remove 664,391 + -0.5 664,391 + +0.1 664,534 + AZOBR_RS03110 0.18 -0.9 664,534 + -0.2 664,535 - AZOBR_RS03110 0.18 -3.0 664,840 + -0.3 664,841 - -0.1 665,097 - AZOBR_RS03115 0.62 -0.9 665,097 - AZOBR_RS03115 0.62 +1.0 665,587 - AZOBR_RS03120 0.26 +0.8 665,688 + AZOBR_RS03120 0.37 -0.7 665,689 - AZOBR_RS03120 0.37 -0.4 666,148 - AZOBR_RS03120 0.85 -0.2 666,186 + AZOBR_RS03120 0.89 +0.1 666,464 + AZOBR_RS03125 0.14 -0.4 666,465 - AZOBR_RS03125 0.14 -0.7 666,974 + AZOBR_RS03125 0.60 -0.2 666,975 - AZOBR_RS03125 0.60 +2.1 667,055 + AZOBR_RS03125 0.67 +0.1 667,238 + AZOBR_RS03125 0.84 +0.3 667,238 + AZOBR_RS03125 0.84 +0.7 667,238 + AZOBR_RS03125 0.84 +0.1 667,239 - AZOBR_RS03125 0.84 -0.3 667,239 - AZOBR_RS03125 0.84 +0.1
Or see this region's nucleotide sequence