Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00060

Experiment: benzoic 0.145 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00050 and AZOBR_RS00055 are separated by 86 nucleotidesAZOBR_RS00055 and AZOBR_RS00060 are separated by 18 nucleotidesAZOBR_RS00060 and AZOBR_RS00065 are separated by 3 nucleotidesAZOBR_RS00065 and AZOBR_RS00070 are separated by 38 nucleotides AZOBR_RS00050: AZOBR_RS00050 - transposase, at 79 to 471 _RS00050 AZOBR_RS00055: AZOBR_RS00055 - transposase, at 558 to 836 _RS00055 AZOBR_RS00060: AZOBR_RS00060 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein, at 855 to 1,928 _RS00060 AZOBR_RS00065: AZOBR_RS00065 - glycerol-3-phosphate transporter membrane protein, at 1,932 to 2,762 _RS00065 AZOBR_RS00070: AZOBR_RS00070 - glycerol-3-phosphate transporter permease, at 2,801 to 3,685 _RS00070 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.309 kb on + strand, within AZOBR_RS00050at 0.309 kb on + strand, within AZOBR_RS00050at 0.594 kb on + strand, within AZOBR_RS00055at 0.594 kb on + strand, within AZOBR_RS00055at 0.595 kb on - strand, within AZOBR_RS00055at 0.693 kb on + strand, within AZOBR_RS00055at 0.693 kb on + strand, within AZOBR_RS00055at 0.694 kb on - strand, within AZOBR_RS00055at 0.699 kb on + strand, within AZOBR_RS00055at 0.700 kb on - strand, within AZOBR_RS00055at 0.769 kb on - strand, within AZOBR_RS00055at 0.825 kb on + strandat 0.826 kb on - strandat 0.833 kb on - strandat 0.833 kb on - strandat 0.833 kb on - strandat 0.833 kb on - strandat 1.000 kb on + strand, within AZOBR_RS00060at 1.001 kb on - strand, within AZOBR_RS00060at 1.001 kb on - strand, within AZOBR_RS00060at 1.010 kb on + strand, within AZOBR_RS00060at 1.264 kb on + strand, within AZOBR_RS00060at 1.265 kb on - strand, within AZOBR_RS00060at 1.363 kb on + strand, within AZOBR_RS00060at 1.363 kb on + strand, within AZOBR_RS00060at 1.364 kb on - strand, within AZOBR_RS00060at 1.364 kb on - strand, within AZOBR_RS00060at 1.669 kb on + strand, within AZOBR_RS00060at 1.678 kb on + strand, within AZOBR_RS00060at 1.679 kb on - strand, within AZOBR_RS00060at 1.679 kb on - strand, within AZOBR_RS00060at 1.679 kb on - strand, within AZOBR_RS00060at 1.679 kb on - strand, within AZOBR_RS00060at 1.934 kb on - strandat 2.134 kb on + strand, within AZOBR_RS00065at 2.134 kb on + strand, within AZOBR_RS00065at 2.135 kb on - strand, within AZOBR_RS00065at 2.135 kb on - strand, within AZOBR_RS00065at 2.150 kb on - strand, within AZOBR_RS00065at 2.344 kb on + strand, within AZOBR_RS00065at 2.344 kb on + strand, within AZOBR_RS00065at 2.344 kb on + strand, within AZOBR_RS00065at 2.345 kb on - strand, within AZOBR_RS00065at 2.380 kb on + strand, within AZOBR_RS00065at 2.380 kb on + strand, within AZOBR_RS00065at 2.381 kb on - strand, within AZOBR_RS00065at 2.479 kb on + strand, within AZOBR_RS00065at 2.611 kb on + strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.754 kb on + strandat 2.754 kb on + strandat 2.754 kb on + strandat 2.754 kb on + strandat 2.754 kb on + strandat 2.754 kb on + strandat 2.755 kb on - strandat 2.755 kb on - strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.809 kb on - strandat 2.809 kb on - strandat 2.809 kb on - strandat 2.809 kb on - strandat 2.809 kb on - strandat 2.809 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.145 mg/ml
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309 + AZOBR_RS00050 0.59 +1.1
309 + AZOBR_RS00050 0.59 +1.2
594 + AZOBR_RS00055 0.13 +0.7
594 + AZOBR_RS00055 0.13 +0.1
595 - AZOBR_RS00055 0.13 +1.2
693 + AZOBR_RS00055 0.48 +0.5
693 + AZOBR_RS00055 0.48 +0.7
694 - AZOBR_RS00055 0.49 +0.6
699 + AZOBR_RS00055 0.51 -0.0
700 - AZOBR_RS00055 0.51 +0.2
769 - AZOBR_RS00055 0.76 +1.9
825 + +1.9
826 - -0.6
833 - +0.7
833 - +0.3
833 - +1.2
833 - +0.8
1,000 + AZOBR_RS00060 0.14 +0.1
1,001 - AZOBR_RS00060 0.14 +0.4
1,001 - AZOBR_RS00060 0.14 -1.3
1,010 + AZOBR_RS00060 0.14 -0.1
1,264 + AZOBR_RS00060 0.38 -0.6
1,265 - AZOBR_RS00060 0.38 +0.1
1,363 + AZOBR_RS00060 0.47 -2.0
1,363 + AZOBR_RS00060 0.47 -0.8
1,364 - AZOBR_RS00060 0.47 -0.6
1,364 - AZOBR_RS00060 0.47 +0.1
1,669 + AZOBR_RS00060 0.76 -0.5
1,678 + AZOBR_RS00060 0.77 +0.4
1,679 - AZOBR_RS00060 0.77 +0.2
1,679 - AZOBR_RS00060 0.77 +0.1
1,679 - AZOBR_RS00060 0.77 -0.3
1,679 - AZOBR_RS00060 0.77 +0.1
1,934 - +0.3
2,134 + AZOBR_RS00065 0.24 -0.1
2,134 + AZOBR_RS00065 0.24 +0.2
2,135 - AZOBR_RS00065 0.24 -0.5
2,135 - AZOBR_RS00065 0.24 +0.1
2,150 - AZOBR_RS00065 0.26 +0.2
2,344 + AZOBR_RS00065 0.50 -0.1
2,344 + AZOBR_RS00065 0.50 -0.7
2,344 + AZOBR_RS00065 0.50 -0.0
2,345 - AZOBR_RS00065 0.50 +0.2
2,380 + AZOBR_RS00065 0.54 -0.0
2,380 + AZOBR_RS00065 0.54 -0.0
2,381 - AZOBR_RS00065 0.54 +0.5
2,479 + AZOBR_RS00065 0.66 +0.3
2,611 + AZOBR_RS00065 0.82 +0.2
2,612 - AZOBR_RS00065 0.82 +0.6
2,612 - AZOBR_RS00065 0.82 -1.9
2,612 - AZOBR_RS00065 0.82 -0.5
2,612 - AZOBR_RS00065 0.82 -0.0
2,612 - AZOBR_RS00065 0.82 +0.3
2,754 + -0.3
2,754 + -0.2
2,754 + -0.1
2,754 + -1.4
2,754 + -0.6
2,754 + +0.1
2,755 - -2.1
2,755 - +1.4
2,808 + +0.6
2,808 + +0.1
2,808 + +0.0
2,808 + +0.1
2,808 + +0.1
2,808 + +0.2
2,809 - +0.0
2,809 - +0.4
2,809 - -0.3
2,809 - +0.2
2,809 - -1.8
2,809 - -2.0

Or see this region's nucleotide sequence