Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26585 and AO353_26590 are separated by 125 nucleotides AO353_26590 and AO353_26595 are separated by 3 nucleotides AO353_26595 and AO353_26600 are separated by 30 nucleotides
AO353_26585: AO353_26585 - TetR family transcriptional regulator, at 5,822,347 to 5,822,967
_26585
AO353_26590: AO353_26590 - hypothetical protein, at 5,823,093 to 5,823,458
_26590
AO353_26595: AO353_26595 - copper resistance protein CopD, at 5,823,462 to 5,824,340
_26595
AO353_26600: AO353_26600 - disulfide bond formation protein DsbA, at 5,824,371 to 5,825,522
_26600
Position (kb)
5823
5824
5825 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5822.471 kb on + strand, within AO353_26585 at 5822.471 kb on + strand, within AO353_26585 at 5822.498 kb on + strand, within AO353_26585 at 5822.498 kb on + strand, within AO353_26585 at 5822.498 kb on + strand, within AO353_26585 at 5822.499 kb on - strand, within AO353_26585 at 5822.499 kb on - strand, within AO353_26585 at 5822.499 kb on - strand, within AO353_26585 at 5822.499 kb on - strand, within AO353_26585 at 5822.499 kb on - strand, within AO353_26585 at 5822.499 kb on - strand, within AO353_26585 at 5822.499 kb on - strand, within AO353_26585 at 5822.499 kb on - strand, within AO353_26585 at 5822.499 kb on - strand, within AO353_26585 at 5822.699 kb on + strand, within AO353_26585 at 5822.699 kb on + strand, within AO353_26585 at 5822.699 kb on + strand, within AO353_26585 at 5822.699 kb on + strand, within AO353_26585 at 5822.700 kb on - strand, within AO353_26585 at 5822.700 kb on - strand, within AO353_26585 at 5822.700 kb on - strand, within AO353_26585 at 5822.792 kb on + strand, within AO353_26585 at 5822.792 kb on + strand, within AO353_26585 at 5822.792 kb on + strand, within AO353_26585 at 5822.793 kb on - strand, within AO353_26585 at 5822.793 kb on - strand, within AO353_26585 at 5822.816 kb on + strand, within AO353_26585 at 5822.817 kb on - strand, within AO353_26585 at 5822.817 kb on - strand, within AO353_26585 at 5822.817 kb on - strand, within AO353_26585 at 5822.817 kb on - strand at 5822.819 kb on + strand, within AO353_26585 at 5822.819 kb on + strand, within AO353_26585 at 5822.819 kb on + strand, within AO353_26585 at 5822.819 kb on + strand, within AO353_26585 at 5822.819 kb on + strand, within AO353_26585 at 5822.820 kb on - strand, within AO353_26585 at 5822.820 kb on - strand, within AO353_26585 at 5822.820 kb on - strand, within AO353_26585 at 5822.820 kb on - strand, within AO353_26585 at 5822.820 kb on - strand, within AO353_26585 at 5822.935 kb on - strand at 5823.000 kb on + strand at 5823.000 kb on + strand at 5823.001 kb on - strand at 5823.001 kb on - strand at 5823.001 kb on - strand at 5823.031 kb on + strand at 5823.047 kb on + strand at 5823.047 kb on + strand at 5823.048 kb on - strand at 5823.048 kb on - strand at 5823.051 kb on + strand at 5823.051 kb on + strand at 5823.051 kb on + strand at 5823.051 kb on + strand at 5823.051 kb on + strand at 5823.051 kb on + strand at 5823.052 kb on - strand at 5823.052 kb on - strand at 5823.052 kb on - strand at 5823.052 kb on - strand at 5823.052 kb on - strand at 5823.052 kb on - strand at 5823.052 kb on - strand at 5823.052 kb on - strand at 5823.052 kb on - strand at 5823.052 kb on - strand at 5823.080 kb on + strand at 5823.080 kb on + strand at 5823.080 kb on + strand at 5823.080 kb on + strand at 5823.080 kb on + strand at 5823.081 kb on - strand at 5823.081 kb on - strand at 5823.160 kb on + strand, within AO353_26590 at 5823.226 kb on + strand, within AO353_26590 at 5823.226 kb on + strand, within AO353_26590 at 5823.227 kb on - strand, within AO353_26590 at 5823.381 kb on + strand, within AO353_26590 at 5823.381 kb on + strand, within AO353_26590 at 5823.381 kb on + strand, within AO353_26590 at 5823.381 kb on + strand, within AO353_26590 at 5823.381 kb on + strand, within AO353_26590 at 5823.381 kb on + strand, within AO353_26590 at 5823.381 kb on + strand, within AO353_26590 at 5823.381 kb on + strand, within AO353_26590 at 5823.381 kb on + strand, within AO353_26590 at 5823.382 kb on - strand, within AO353_26590 at 5823.382 kb on - strand, within AO353_26590 at 5823.382 kb on - strand, within AO353_26590 at 5823.419 kb on + strand, within AO353_26590 at 5823.419 kb on + strand, within AO353_26590 at 5823.419 kb on + strand, within AO353_26590 at 5823.420 kb on - strand, within AO353_26590 at 5823.435 kb on + strand at 5823.435 kb on + strand at 5823.435 kb on + strand at 5823.435 kb on + strand at 5823.436 kb on - strand at 5823.830 kb on + strand, within AO353_26595 at 5823.830 kb on + strand, within AO353_26595 at 5823.830 kb on + strand, within AO353_26595 at 5823.830 kb on + strand, within AO353_26595 at 5823.830 kb on + strand, within AO353_26595 at 5823.831 kb on - strand, within AO353_26595 at 5823.831 kb on - strand, within AO353_26595 at 5823.831 kb on - strand, within AO353_26595 at 5823.831 kb on - strand, within AO353_26595 at 5823.831 kb on - strand, within AO353_26595 at 5823.831 kb on - strand, within AO353_26595 at 5823.831 kb on - strand, within AO353_26595 at 5823.831 kb on - strand, within AO353_26595 at 5824.310 kb on + strand at 5824.310 kb on + strand at 5824.310 kb on + strand at 5824.310 kb on + strand at 5824.311 kb on - strand at 5824.311 kb on - strand at 5824.311 kb on - strand at 5824.311 kb on - strand at 5824.409 kb on + strand at 5824.409 kb on + strand at 5824.409 kb on + strand at 5824.574 kb on + strand, within AO353_26600 at 5824.574 kb on + strand, within AO353_26600 at 5824.574 kb on + strand, within AO353_26600 at 5824.574 kb on + strand, within AO353_26600 at 5824.574 kb on + strand, within AO353_26600 at 5824.575 kb on - strand, within AO353_26600 at 5824.575 kb on - strand, within AO353_26600 at 5824.575 kb on - strand, within AO353_26600 at 5824.575 kb on - strand, within AO353_26600 at 5824.575 kb on - strand, within AO353_26600 at 5824.628 kb on + strand, within AO353_26600 at 5824.629 kb on - strand, within AO353_26600 at 5824.735 kb on + strand, within AO353_26600 at 5824.736 kb on - strand, within AO353_26600 at 5825.016 kb on - strand, within AO353_26600 at 5825.182 kb on + strand, within AO353_26600 at 5825.182 kb on + strand, within AO353_26600 at 5825.182 kb on + strand, within AO353_26600 at 5825.182 kb on + strand, within AO353_26600 at 5825.183 kb on - strand, within AO353_26600 at 5825.183 kb on - strand, within AO353_26600 at 5825.260 kb on + strand, within AO353_26600 at 5825.289 kb on + strand, within AO353_26600 at 5825.290 kb on - strand, within AO353_26600
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 5,822,471 + AO353_26585 0.20 +0.6 5,822,471 + AO353_26585 0.20 -1.2 5,822,498 + AO353_26585 0.24 -0.1 5,822,498 + AO353_26585 0.24 -0.3 5,822,498 + AO353_26585 0.24 -1.2 5,822,499 - AO353_26585 0.24 -1.9 5,822,499 - AO353_26585 0.24 +0.2 5,822,499 - AO353_26585 0.24 -0.2 5,822,499 - AO353_26585 0.24 -0.5 5,822,499 - AO353_26585 0.24 -0.9 5,822,499 - AO353_26585 0.24 -1.2 5,822,499 - AO353_26585 0.24 -1.8 5,822,499 - AO353_26585 0.24 -2.2 5,822,499 - AO353_26585 0.24 +0.4 5,822,699 + AO353_26585 0.57 +0.2 5,822,699 + AO353_26585 0.57 -0.5 5,822,699 + AO353_26585 0.57 -0.4 5,822,699 + AO353_26585 0.57 +0.3 5,822,700 - AO353_26585 0.57 -0.4 5,822,700 - AO353_26585 0.57 +0.9 5,822,700 - AO353_26585 0.57 -2.4 5,822,792 + AO353_26585 0.72 +0.5 5,822,792 + AO353_26585 0.72 -0.5 5,822,792 + AO353_26585 0.72 -0.0 5,822,793 - AO353_26585 0.72 +0.9 5,822,793 - AO353_26585 0.72 -0.2 5,822,816 + AO353_26585 0.76 -0.1 5,822,817 - AO353_26585 0.76 -0.0 5,822,817 - AO353_26585 0.76 -0.4 5,822,817 - AO353_26585 0.76 +1.3 5,822,817 - +0.1 5,822,819 + AO353_26585 0.76 +0.3 5,822,819 + AO353_26585 0.76 -2.3 5,822,819 + AO353_26585 0.76 +0.3 5,822,819 + AO353_26585 0.76 -0.6 5,822,819 + AO353_26585 0.76 +0.1 5,822,820 - AO353_26585 0.76 -1.0 5,822,820 - AO353_26585 0.76 -0.7 5,822,820 - AO353_26585 0.76 -0.5 5,822,820 - AO353_26585 0.76 -0.8 5,822,820 - AO353_26585 0.76 -0.9 5,822,935 - +1.2 5,823,000 + -0.6 5,823,000 + +0.1 5,823,001 - +0.9 5,823,001 - +1.3 5,823,001 - -0.9 5,823,031 + -0.1 5,823,047 + -0.2 5,823,047 + -0.5 5,823,048 - +1.3 5,823,048 - -0.4 5,823,051 + +0.2 5,823,051 + +0.6 5,823,051 + -0.1 5,823,051 + -0.9 5,823,051 + +0.9 5,823,051 + -0.7 5,823,052 - -0.0 5,823,052 - +0.6 5,823,052 - -0.3 5,823,052 - -0.0 5,823,052 - -1.2 5,823,052 - +0.4 5,823,052 - +0.2 5,823,052 - +0.6 5,823,052 - +1.1 5,823,052 - -1.0 5,823,080 + -0.4 5,823,080 + +0.1 5,823,080 + +0.4 5,823,080 + +0.5 5,823,080 + +1.1 5,823,081 - -1.7 5,823,081 - +1.5 5,823,160 + AO353_26590 0.18 +2.6 5,823,226 + AO353_26590 0.36 +0.3 5,823,226 + AO353_26590 0.36 -0.2 5,823,227 - AO353_26590 0.37 -0.2 5,823,381 + AO353_26590 0.79 +0.1 5,823,381 + AO353_26590 0.79 -0.4 5,823,381 + AO353_26590 0.79 +0.1 5,823,381 + AO353_26590 0.79 +0.7 5,823,381 + AO353_26590 0.79 -2.4 5,823,381 + AO353_26590 0.79 -0.1 5,823,381 + AO353_26590 0.79 +0.1 5,823,381 + AO353_26590 0.79 -0.3 5,823,381 + AO353_26590 0.79 -0.4 5,823,382 - AO353_26590 0.79 -0.0 5,823,382 - AO353_26590 0.79 -0.8 5,823,382 - AO353_26590 0.79 -0.6 5,823,419 + AO353_26590 0.89 -0.3 5,823,419 + AO353_26590 0.89 +0.6 5,823,419 + AO353_26590 0.89 -0.7 5,823,420 - AO353_26590 0.89 -0.6 5,823,435 + -0.3 5,823,435 + -0.9 5,823,435 + -0.6 5,823,435 + +0.1 5,823,436 - +0.2 5,823,830 + AO353_26595 0.42 -0.7 5,823,830 + AO353_26595 0.42 -1.8 5,823,830 + AO353_26595 0.42 -0.5 5,823,830 + AO353_26595 0.42 -1.0 5,823,830 + AO353_26595 0.42 -1.6 5,823,831 - AO353_26595 0.42 -1.5 5,823,831 - AO353_26595 0.42 +1.0 5,823,831 - AO353_26595 0.42 -0.8 5,823,831 - AO353_26595 0.42 -0.2 5,823,831 - AO353_26595 0.42 -2.5 5,823,831 - AO353_26595 0.42 -0.4 5,823,831 - AO353_26595 0.42 -0.1 5,823,831 - AO353_26595 0.42 -1.9 5,824,310 + -0.3 5,824,310 + -0.7 5,824,310 + +0.2 5,824,310 + -2.1 5,824,311 - +0.0 5,824,311 - -0.3 5,824,311 - -0.1 5,824,311 - +0.2 5,824,409 + +0.2 5,824,409 + -1.2 5,824,409 + -0.5 5,824,574 + AO353_26600 0.18 -0.9 5,824,574 + AO353_26600 0.18 +1.1 5,824,574 + AO353_26600 0.18 -1.2 5,824,574 + AO353_26600 0.18 -0.2 5,824,574 + AO353_26600 0.18 -1.7 5,824,575 - AO353_26600 0.18 -0.6 5,824,575 - AO353_26600 0.18 +0.9 5,824,575 - AO353_26600 0.18 -0.6 5,824,575 - AO353_26600 0.18 -0.4 5,824,575 - AO353_26600 0.18 +1.4 5,824,628 + AO353_26600 0.22 -0.9 5,824,629 - AO353_26600 0.22 +0.8 5,824,735 + AO353_26600 0.32 +0.3 5,824,736 - AO353_26600 0.32 -1.1 5,825,016 - AO353_26600 0.56 +0.1 5,825,182 + AO353_26600 0.70 +0.3 5,825,182 + AO353_26600 0.70 -0.0 5,825,182 + AO353_26600 0.70 +1.5 5,825,182 + AO353_26600 0.70 +0.6 5,825,183 - AO353_26600 0.70 +0.9 5,825,183 - AO353_26600 0.70 -0.7 5,825,260 + AO353_26600 0.77 +0.2 5,825,289 + AO353_26600 0.80 +1.1 5,825,290 - AO353_26600 0.80 -0.2
Or see this region's nucleotide sequence