Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26595

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26585 and AO353_26590 are separated by 125 nucleotidesAO353_26590 and AO353_26595 are separated by 3 nucleotidesAO353_26595 and AO353_26600 are separated by 30 nucleotides AO353_26585: AO353_26585 - TetR family transcriptional regulator, at 5,822,347 to 5,822,967 _26585 AO353_26590: AO353_26590 - hypothetical protein, at 5,823,093 to 5,823,458 _26590 AO353_26595: AO353_26595 - copper resistance protein CopD, at 5,823,462 to 5,824,340 _26595 AO353_26600: AO353_26600 - disulfide bond formation protein DsbA, at 5,824,371 to 5,825,522 _26600 Position (kb) 5823 5824 5825Strain fitness (log2 ratio) -2 -1 0 1 2at 5822.471 kb on + strand, within AO353_26585at 5822.471 kb on + strand, within AO353_26585at 5822.498 kb on + strand, within AO353_26585at 5822.498 kb on + strand, within AO353_26585at 5822.498 kb on + strand, within AO353_26585at 5822.499 kb on - strand, within AO353_26585at 5822.499 kb on - strand, within AO353_26585at 5822.499 kb on - strand, within AO353_26585at 5822.499 kb on - strand, within AO353_26585at 5822.499 kb on - strand, within AO353_26585at 5822.499 kb on - strand, within AO353_26585at 5822.499 kb on - strand, within AO353_26585at 5822.499 kb on - strand, within AO353_26585at 5822.499 kb on - strand, within AO353_26585at 5822.699 kb on + strand, within AO353_26585at 5822.699 kb on + strand, within AO353_26585at 5822.699 kb on + strand, within AO353_26585at 5822.699 kb on + strand, within AO353_26585at 5822.700 kb on - strand, within AO353_26585at 5822.700 kb on - strand, within AO353_26585at 5822.700 kb on - strand, within AO353_26585at 5822.792 kb on + strand, within AO353_26585at 5822.792 kb on + strand, within AO353_26585at 5822.792 kb on + strand, within AO353_26585at 5822.793 kb on - strand, within AO353_26585at 5822.793 kb on - strand, within AO353_26585at 5822.816 kb on + strand, within AO353_26585at 5822.817 kb on - strand, within AO353_26585at 5822.817 kb on - strand, within AO353_26585at 5822.817 kb on - strand, within AO353_26585at 5822.817 kb on - strandat 5822.819 kb on + strand, within AO353_26585at 5822.819 kb on + strand, within AO353_26585at 5822.819 kb on + strand, within AO353_26585at 5822.819 kb on + strand, within AO353_26585at 5822.819 kb on + strand, within AO353_26585at 5822.820 kb on - strand, within AO353_26585at 5822.820 kb on - strand, within AO353_26585at 5822.820 kb on - strand, within AO353_26585at 5822.820 kb on - strand, within AO353_26585at 5822.820 kb on - strand, within AO353_26585at 5822.935 kb on - strandat 5823.000 kb on + strandat 5823.000 kb on + strandat 5823.001 kb on - strandat 5823.001 kb on - strandat 5823.001 kb on - strandat 5823.031 kb on + strandat 5823.047 kb on + strandat 5823.047 kb on + strandat 5823.048 kb on - strandat 5823.048 kb on - strandat 5823.051 kb on + strandat 5823.051 kb on + strandat 5823.051 kb on + strandat 5823.051 kb on + strandat 5823.051 kb on + strandat 5823.051 kb on + strandat 5823.052 kb on - strandat 5823.052 kb on - strandat 5823.052 kb on - strandat 5823.052 kb on - strandat 5823.052 kb on - strandat 5823.052 kb on - strandat 5823.052 kb on - strandat 5823.052 kb on - strandat 5823.052 kb on - strandat 5823.052 kb on - strandat 5823.080 kb on + strandat 5823.080 kb on + strandat 5823.080 kb on + strandat 5823.080 kb on + strandat 5823.080 kb on + strandat 5823.081 kb on - strandat 5823.081 kb on - strandat 5823.160 kb on + strand, within AO353_26590at 5823.226 kb on + strand, within AO353_26590at 5823.226 kb on + strand, within AO353_26590at 5823.227 kb on - strand, within AO353_26590at 5823.381 kb on + strand, within AO353_26590at 5823.381 kb on + strand, within AO353_26590at 5823.381 kb on + strand, within AO353_26590at 5823.381 kb on + strand, within AO353_26590at 5823.381 kb on + strand, within AO353_26590at 5823.381 kb on + strand, within AO353_26590at 5823.381 kb on + strand, within AO353_26590at 5823.381 kb on + strand, within AO353_26590at 5823.381 kb on + strand, within AO353_26590at 5823.382 kb on - strand, within AO353_26590at 5823.382 kb on - strand, within AO353_26590at 5823.382 kb on - strand, within AO353_26590at 5823.419 kb on + strand, within AO353_26590at 5823.419 kb on + strand, within AO353_26590at 5823.419 kb on + strand, within AO353_26590at 5823.420 kb on - strand, within AO353_26590at 5823.435 kb on + strandat 5823.435 kb on + strandat 5823.435 kb on + strandat 5823.435 kb on + strandat 5823.436 kb on - strandat 5823.830 kb on + strand, within AO353_26595at 5823.830 kb on + strand, within AO353_26595at 5823.830 kb on + strand, within AO353_26595at 5823.830 kb on + strand, within AO353_26595at 5823.830 kb on + strand, within AO353_26595at 5823.831 kb on - strand, within AO353_26595at 5823.831 kb on - strand, within AO353_26595at 5823.831 kb on - strand, within AO353_26595at 5823.831 kb on - strand, within AO353_26595at 5823.831 kb on - strand, within AO353_26595at 5823.831 kb on - strand, within AO353_26595at 5823.831 kb on - strand, within AO353_26595at 5823.831 kb on - strand, within AO353_26595at 5824.310 kb on + strandat 5824.310 kb on + strandat 5824.310 kb on + strandat 5824.310 kb on + strandat 5824.311 kb on - strandat 5824.311 kb on - strandat 5824.311 kb on - strandat 5824.311 kb on - strandat 5824.409 kb on + strandat 5824.409 kb on + strandat 5824.409 kb on + strandat 5824.574 kb on + strand, within AO353_26600at 5824.574 kb on + strand, within AO353_26600at 5824.574 kb on + strand, within AO353_26600at 5824.574 kb on + strand, within AO353_26600at 5824.574 kb on + strand, within AO353_26600at 5824.575 kb on - strand, within AO353_26600at 5824.575 kb on - strand, within AO353_26600at 5824.575 kb on - strand, within AO353_26600at 5824.575 kb on - strand, within AO353_26600at 5824.575 kb on - strand, within AO353_26600at 5824.628 kb on + strand, within AO353_26600at 5824.629 kb on - strand, within AO353_26600at 5824.735 kb on + strand, within AO353_26600at 5824.736 kb on - strand, within AO353_26600at 5825.016 kb on - strand, within AO353_26600at 5825.182 kb on + strand, within AO353_26600at 5825.182 kb on + strand, within AO353_26600at 5825.182 kb on + strand, within AO353_26600at 5825.182 kb on + strand, within AO353_26600at 5825.183 kb on - strand, within AO353_26600at 5825.183 kb on - strand, within AO353_26600at 5825.260 kb on + strand, within AO353_26600at 5825.289 kb on + strand, within AO353_26600at 5825.290 kb on - strand, within AO353_26600

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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5,822,471 + AO353_26585 0.20 +0.6
5,822,471 + AO353_26585 0.20 -1.2
5,822,498 + AO353_26585 0.24 -0.1
5,822,498 + AO353_26585 0.24 -0.3
5,822,498 + AO353_26585 0.24 -1.2
5,822,499 - AO353_26585 0.24 -1.9
5,822,499 - AO353_26585 0.24 +0.2
5,822,499 - AO353_26585 0.24 -0.2
5,822,499 - AO353_26585 0.24 -0.5
5,822,499 - AO353_26585 0.24 -0.9
5,822,499 - AO353_26585 0.24 -1.2
5,822,499 - AO353_26585 0.24 -1.8
5,822,499 - AO353_26585 0.24 -2.2
5,822,499 - AO353_26585 0.24 +0.4
5,822,699 + AO353_26585 0.57 +0.2
5,822,699 + AO353_26585 0.57 -0.5
5,822,699 + AO353_26585 0.57 -0.4
5,822,699 + AO353_26585 0.57 +0.3
5,822,700 - AO353_26585 0.57 -0.4
5,822,700 - AO353_26585 0.57 +0.9
5,822,700 - AO353_26585 0.57 -2.4
5,822,792 + AO353_26585 0.72 +0.5
5,822,792 + AO353_26585 0.72 -0.5
5,822,792 + AO353_26585 0.72 -0.0
5,822,793 - AO353_26585 0.72 +0.9
5,822,793 - AO353_26585 0.72 -0.2
5,822,816 + AO353_26585 0.76 -0.1
5,822,817 - AO353_26585 0.76 -0.0
5,822,817 - AO353_26585 0.76 -0.4
5,822,817 - AO353_26585 0.76 +1.3
5,822,817 - +0.1
5,822,819 + AO353_26585 0.76 +0.3
5,822,819 + AO353_26585 0.76 -2.3
5,822,819 + AO353_26585 0.76 +0.3
5,822,819 + AO353_26585 0.76 -0.6
5,822,819 + AO353_26585 0.76 +0.1
5,822,820 - AO353_26585 0.76 -1.0
5,822,820 - AO353_26585 0.76 -0.7
5,822,820 - AO353_26585 0.76 -0.5
5,822,820 - AO353_26585 0.76 -0.8
5,822,820 - AO353_26585 0.76 -0.9
5,822,935 - +1.2
5,823,000 + -0.6
5,823,000 + +0.1
5,823,001 - +0.9
5,823,001 - +1.3
5,823,001 - -0.9
5,823,031 + -0.1
5,823,047 + -0.2
5,823,047 + -0.5
5,823,048 - +1.3
5,823,048 - -0.4
5,823,051 + +0.2
5,823,051 + +0.6
5,823,051 + -0.1
5,823,051 + -0.9
5,823,051 + +0.9
5,823,051 + -0.7
5,823,052 - -0.0
5,823,052 - +0.6
5,823,052 - -0.3
5,823,052 - -0.0
5,823,052 - -1.2
5,823,052 - +0.4
5,823,052 - +0.2
5,823,052 - +0.6
5,823,052 - +1.1
5,823,052 - -1.0
5,823,080 + -0.4
5,823,080 + +0.1
5,823,080 + +0.4
5,823,080 + +0.5
5,823,080 + +1.1
5,823,081 - -1.7
5,823,081 - +1.5
5,823,160 + AO353_26590 0.18 +2.6
5,823,226 + AO353_26590 0.36 +0.3
5,823,226 + AO353_26590 0.36 -0.2
5,823,227 - AO353_26590 0.37 -0.2
5,823,381 + AO353_26590 0.79 +0.1
5,823,381 + AO353_26590 0.79 -0.4
5,823,381 + AO353_26590 0.79 +0.1
5,823,381 + AO353_26590 0.79 +0.7
5,823,381 + AO353_26590 0.79 -2.4
5,823,381 + AO353_26590 0.79 -0.1
5,823,381 + AO353_26590 0.79 +0.1
5,823,381 + AO353_26590 0.79 -0.3
5,823,381 + AO353_26590 0.79 -0.4
5,823,382 - AO353_26590 0.79 -0.0
5,823,382 - AO353_26590 0.79 -0.8
5,823,382 - AO353_26590 0.79 -0.6
5,823,419 + AO353_26590 0.89 -0.3
5,823,419 + AO353_26590 0.89 +0.6
5,823,419 + AO353_26590 0.89 -0.7
5,823,420 - AO353_26590 0.89 -0.6
5,823,435 + -0.3
5,823,435 + -0.9
5,823,435 + -0.6
5,823,435 + +0.1
5,823,436 - +0.2
5,823,830 + AO353_26595 0.42 -0.7
5,823,830 + AO353_26595 0.42 -1.8
5,823,830 + AO353_26595 0.42 -0.5
5,823,830 + AO353_26595 0.42 -1.0
5,823,830 + AO353_26595 0.42 -1.6
5,823,831 - AO353_26595 0.42 -1.5
5,823,831 - AO353_26595 0.42 +1.0
5,823,831 - AO353_26595 0.42 -0.8
5,823,831 - AO353_26595 0.42 -0.2
5,823,831 - AO353_26595 0.42 -2.5
5,823,831 - AO353_26595 0.42 -0.4
5,823,831 - AO353_26595 0.42 -0.1
5,823,831 - AO353_26595 0.42 -1.9
5,824,310 + -0.3
5,824,310 + -0.7
5,824,310 + +0.2
5,824,310 + -2.1
5,824,311 - +0.0
5,824,311 - -0.3
5,824,311 - -0.1
5,824,311 - +0.2
5,824,409 + +0.2
5,824,409 + -1.2
5,824,409 + -0.5
5,824,574 + AO353_26600 0.18 -0.9
5,824,574 + AO353_26600 0.18 +1.1
5,824,574 + AO353_26600 0.18 -1.2
5,824,574 + AO353_26600 0.18 -0.2
5,824,574 + AO353_26600 0.18 -1.7
5,824,575 - AO353_26600 0.18 -0.6
5,824,575 - AO353_26600 0.18 +0.9
5,824,575 - AO353_26600 0.18 -0.6
5,824,575 - AO353_26600 0.18 -0.4
5,824,575 - AO353_26600 0.18 +1.4
5,824,628 + AO353_26600 0.22 -0.9
5,824,629 - AO353_26600 0.22 +0.8
5,824,735 + AO353_26600 0.32 +0.3
5,824,736 - AO353_26600 0.32 -1.1
5,825,016 - AO353_26600 0.56 +0.1
5,825,182 + AO353_26600 0.70 +0.3
5,825,182 + AO353_26600 0.70 -0.0
5,825,182 + AO353_26600 0.70 +1.5
5,825,182 + AO353_26600 0.70 +0.6
5,825,183 - AO353_26600 0.70 +0.9
5,825,183 - AO353_26600 0.70 -0.7
5,825,260 + AO353_26600 0.77 +0.2
5,825,289 + AO353_26600 0.80 +1.1
5,825,290 - AO353_26600 0.80 -0.2

Or see this region's nucleotide sequence