Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005883

Experiment: L-Rhamnose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Rhamnose (C)
2,194,623	+		ABIE53_005882	0.53	+0.9
2,194,624	-		ABIE53_005882	0.53	+0.4
2,194,624	-		ABIE53_005882	0.53	-0.4
2,194,624	-		ABIE53_005882	0.53	+0.6
2,194,676	+		ABIE53_005882	0.57	+0.2
2,194,676	+		ABIE53_005882	0.57	-0.8
2,194,676	+		ABIE53_005882	0.57	+0.5
2,194,677	-		ABIE53_005882	0.57	+0.6
2,194,677	-		ABIE53_005882	0.57	+0.2
2,194,697	+		ABIE53_005882	0.58	-2.6
2,194,697	+		ABIE53_005882	0.58	-2.3
2,194,698	-		ABIE53_005882	0.58	+0.3
2,194,698	-		ABIE53_005882	0.58	+0.9
2,194,698	-		ABIE53_005882	0.58	-2.0
2,194,698	-		ABIE53_005882	0.58	+1.2
2,194,698	-		ABIE53_005882	0.58	-0.3
2,194,698	-		ABIE53_005882	0.58	+0.1
2,194,698	-		ABIE53_005882	0.58	+0.9
2,194,732	+		ABIE53_005882	0.61	-0.8
2,194,733	-		ABIE53_005882	0.61	+0.6
2,194,793	+		ABIE53_005882	0.65	-0.3
2,194,793	+		ABIE53_005882	0.65	-1.7
2,194,794	-		ABIE53_005882	0.65	+2.6
2,194,794	-		ABIE53_005882	0.65	+0.4
2,194,794	-		ABIE53_005882	0.65	-1.5
2,194,794	-		ABIE53_005882	0.65	-1.1
2,194,897	+		ABIE53_005882	0.72	+0.6
2,195,048	+		ABIE53_005882	0.82	+1.2
2,195,048	+		ABIE53_005882	0.82	+0.3
2,195,048	+		ABIE53_005882	0.82	-2.5
2,195,048	+		ABIE53_005882	0.82	+1.6
2,195,048	+		ABIE53_005882	0.82	-0.3
2,195,048	+		ABIE53_005882	0.82	+0.6
2,195,048	+		ABIE53_005882	0.82	+0.3
2,195,048	+		ABIE53_005882	0.82	-0.1
2,195,048	+		ABIE53_005882	0.82	-1.0
2,195,048	+		ABIE53_005882	0.82	+1.8
2,195,049	-		ABIE53_005882	0.82	-0.7
2,195,049	-		ABIE53_005882	0.82	-0.8
2,195,049	-		ABIE53_005882	0.82	-0.1
2,195,049	-		ABIE53_005882	0.82	+0.4
2,195,049	-		ABIE53_005882	0.82	-0.1
2,195,049	-		ABIE53_005882	0.82	-1.4
2,195,049	-		ABIE53_005882	0.82	-0.7
2,195,049	-		ABIE53_005882	0.82	-0.8
2,195,049	-		ABIE53_005882	0.82	-1.4
2,195,049	-		ABIE53_005882	0.82	-1.1
2,195,049	-		ABIE53_005882	0.82	-1.0
2,195,049	-		ABIE53_005882	0.82	+0.2
2,195,049	-		ABIE53_005882	0.82	-0.4
2,195,049	-		ABIE53_005882	0.82	-1.9
2,195,049	-		ABIE53_005882	0.82	+0.6
2,195,049	-		ABIE53_005882	0.82	+0.4
2,195,050	+		ABIE53_005882	0.82	-1.6
2,195,050	+		ABIE53_005882	0.82	-1.1
2,195,050	+		ABIE53_005882	0.82	-1.3
2,195,051	-		ABIE53_005882	0.82	+0.5
2,195,051	-		ABIE53_005882	0.82	-0.7
2,195,264	+				-0.5
2,195,264	+				+0.1
2,195,264	+				-1.8
2,195,264	+				+0.8
2,195,265	-				-0.4
2,195,265	-				+1.2
2,195,265	-				-0.0
2,195,265	-				-0.3
2,195,424	+				-0.4
2,195,424	+				+0.2
2,195,425	-				+0.8
2,195,451	+				-1.0
2,195,451	+				+0.3
2,195,451	+				+0.8
2,195,452	-				-2.0
2,195,452	-				-0.2
2,195,493	+				-0.3
2,195,493	+				+1.4
2,195,494	-				+2.2
2,195,494	-				-1.0
2,195,506	+				+1.1
2,195,507	-				-1.0
2,195,507	-				-0.6
2,195,507	-				-0.6
2,195,673	-		ABIE53_005883	0.16	+1.2
2,195,679	+		ABIE53_005883	0.16	+0.3
2,195,680	-		ABIE53_005883	0.16	+3.0
2,195,680	-		ABIE53_005883	0.16	-0.5
2,195,680	-		ABIE53_005883	0.16	+3.6
2,195,863	-		ABIE53_005883	0.32	-0.1
2,195,871	+		ABIE53_005883	0.33	-0.8
2,195,871	+		ABIE53_005883	0.33	-0.1
2,195,871	+		ABIE53_005883	0.33	+1.6
2,195,871	+		ABIE53_005883	0.33	+3.3
2,195,872	-		ABIE53_005883	0.33	+2.2
2,195,872	-		ABIE53_005883	0.33	-0.7
2,195,872	-		ABIE53_005883	0.33	+0.7
2,195,872	-		ABIE53_005883	0.33	+0.6
2,195,872	-		ABIE53_005883	0.33	-0.0
2,195,872	-		ABIE53_005883	0.33	+1.5
2,195,872	-		ABIE53_005883	0.33	+0.6
2,195,872	-		ABIE53_005883	0.33	-0.8
2,196,069	+		ABIE53_005883	0.50	+2.2
2,196,069	+		ABIE53_005883	0.50	-0.9
2,196,069	+		ABIE53_005883	0.50	-0.0
2,196,070	-		ABIE53_005883	0.50	-0.4
2,196,070	-		ABIE53_005883	0.50	+0.6
2,196,070	-		ABIE53_005883	0.50	-0.3
2,196,070	-		ABIE53_005883	0.50	-0.1
2,196,070	-		ABIE53_005883	0.50	+0.2
2,196,105	+		ABIE53_005883	0.53	-0.1
2,196,105	+		ABIE53_005883	0.53	+1.2
2,196,106	-		ABIE53_005883	0.53	-0.5
2,196,134	+		ABIE53_005883	0.55	-1.7
2,196,134	+		ABIE53_005883	0.55	+0.2
2,196,134	+		ABIE53_005883	0.55	+0.4
2,196,134	+		ABIE53_005883	0.55	-0.6
2,196,134	+		ABIE53_005883	0.55	-1.5
2,196,134	+		ABIE53_005883	0.55	+0.7
2,196,135	-		ABIE53_005883	0.55	+0.2
2,196,135	-		ABIE53_005883	0.55	-1.8
2,196,135	-		ABIE53_005883	0.55	-0.4
2,196,135	-		ABIE53_005883	0.55	-0.7
2,196,135	-		ABIE53_005883	0.55	+0.6
2,196,135	-		ABIE53_005883	0.55	-1.6
2,196,135	-		ABIE53_005883	0.55	-0.4
2,196,135	-		ABIE53_005883	0.55	-0.8
2,196,135	-		ABIE53_005883	0.55	-1.6
2,196,181	+		ABIE53_005883	0.59	+0.2
2,196,373	-		ABIE53_005883	0.76	+1.9
2,196,488	+		ABIE53_005883	0.86	-0.4
2,196,488	+		ABIE53_005883	0.86	-0.4
2,196,489	-		ABIE53_005883	0.86	+4.2
2,196,653	-				+1.2
2,196,653	-				+0.0
2,196,654	+				-0.8
2,196,654	+				-1.1
2,196,654	+				-0.8
2,196,655	-				-1.0
2,196,655	-				+1.6
2,196,655	-				+0.4
2,196,727	-				-0.6
2,196,741	-				+0.0
2,196,791	-				+0.2
2,196,936	+		ABIE53_005884	0.27	-1.0
2,196,936	+		ABIE53_005884	0.27	-1.3
2,196,937	-		ABIE53_005884	0.27	-0.9
2,196,937	-		ABIE53_005884	0.27	-0.5
2,196,937	-		ABIE53_005884	0.27	+0.2
2,196,938	+		ABIE53_005884	0.27	-0.8
2,196,938	+		ABIE53_005884	0.27	-0.4
2,196,939	-		ABIE53_005884	0.27	+0.5
2,196,939	-		ABIE53_005884	0.27	+1.9
2,196,965	+		ABIE53_005884	0.31	-0.7
2,196,966	-		ABIE53_005884	0.31	+0.2
2,196,992	+		ABIE53_005884	0.34	+1.4
2,196,992	+		ABIE53_005884	0.34	-0.8
2,197,047	-		ABIE53_005884	0.42	+1.4
2,197,089	+		ABIE53_005884	0.48	-0.9
2,197,089	+		ABIE53_005884	0.48	-1.0
2,197,090	-		ABIE53_005884	0.48	-0.8
2,197,090	-		ABIE53_005884	0.48	+1.0
2,197,090	-		ABIE53_005884	0.48	+0.2
2,197,090	-		ABIE53_005884	0.48	+0.2
2,197,271	+		ABIE53_005884	0.73	-2.0
2,197,272	-		ABIE53_005884	0.73	-1.5
2,197,299	+		ABIE53_005884	0.77	+1.2
2,197,299	+		ABIE53_005884	0.77	-0.1
2,197,300	-		ABIE53_005884	0.77	+0.6
2,197,363	+		ABIE53_005884	0.85	+0.6
2,197,363	+		ABIE53_005884	0.85	+1.2
2,197,363	+		ABIE53_005884	0.85	-1.1
2,197,364	-		ABIE53_005884	0.85	-0.4
2,197,365	+		ABIE53_005884	0.86	-0.6
2,197,365	+		ABIE53_005884	0.86	-1.0
2,197,365	+		ABIE53_005884	0.86	-0.5
2,197,365	+		ABIE53_005884	0.86	+1.2
2,197,365	+		ABIE53_005884	0.86	-0.4
2,197,365	+		ABIE53_005884	0.86	-1.6
2,197,366	-		ABIE53_005884	0.86	+0.9
2,197,366	-		ABIE53_005884	0.86	+0.4
2,197,366	-		ABIE53_005884	0.86	+0.4
2,197,366	-		ABIE53_005884	0.86	-1.5
2,197,443	+				-1.4
2,197,467	+				-0.7
2,197,468	-				-1.4
2,197,476	-				-1.4
2,197,650	-		ABIE53_005885	0.19	+0.2