Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004420

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004419 and ABIE53_004420 are separated by 94 nucleotidesABIE53_004420 and ABIE53_004421 are separated by 155 nucleotidesABIE53_004421 and ABIE53_004422 are separated by 43 nucleotides ABIE53_004419: ABIE53_004419 - ribose transport system substrate-binding protein, at 607,302 to 608,264 _004419 ABIE53_004420: ABIE53_004420 - hypothetical protein, at 608,359 to 609,699 _004420 ABIE53_004421: ABIE53_004421 - methylated-DNA-[protein]-cysteine S-methyltransferase, at 609,855 to 610,457 _004421 ABIE53_004422: ABIE53_004422 - hypothetical protein, at 610,501 to 612,084 _004422 Position (kb) 608 609 610Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 607.449 kb on + strand, within ABIE53_004419at 607.449 kb on + strand, within ABIE53_004419at 607.450 kb on - strand, within ABIE53_004419at 607.450 kb on - strand, within ABIE53_004419at 607.450 kb on - strand, within ABIE53_004419at 607.493 kb on + strand, within ABIE53_004419at 607.494 kb on - strand, within ABIE53_004419at 607.495 kb on + strand, within ABIE53_004419at 607.495 kb on + strand, within ABIE53_004419at 607.507 kb on + strand, within ABIE53_004419at 607.507 kb on + strand, within ABIE53_004419at 607.507 kb on + strand, within ABIE53_004419at 607.508 kb on - strand, within ABIE53_004419at 607.578 kb on + strand, within ABIE53_004419at 607.578 kb on + strand, within ABIE53_004419at 607.578 kb on + strand, within ABIE53_004419at 607.579 kb on - strand, within ABIE53_004419at 607.579 kb on - strand, within ABIE53_004419at 607.612 kb on - strand, within ABIE53_004419at 607.795 kb on + strand, within ABIE53_004419at 607.795 kb on + strand, within ABIE53_004419at 607.796 kb on - strand, within ABIE53_004419at 607.796 kb on - strand, within ABIE53_004419at 608.093 kb on - strand, within ABIE53_004419at 608.093 kb on - strand, within ABIE53_004419at 608.534 kb on + strand, within ABIE53_004420at 608.534 kb on + strand, within ABIE53_004420at 608.534 kb on + strand, within ABIE53_004420at 608.534 kb on + strand, within ABIE53_004420at 608.534 kb on + strand, within ABIE53_004420at 608.534 kb on + strand, within ABIE53_004420at 608.534 kb on + strand, within ABIE53_004420at 608.535 kb on - strand, within ABIE53_004420at 608.535 kb on - strand, within ABIE53_004420at 608.535 kb on - strand, within ABIE53_004420at 608.592 kb on - strand, within ABIE53_004420at 608.592 kb on - strand, within ABIE53_004420at 608.617 kb on + strand, within ABIE53_004420at 608.618 kb on - strand, within ABIE53_004420at 608.618 kb on - strand, within ABIE53_004420at 608.623 kb on + strand, within ABIE53_004420at 608.623 kb on + strand, within ABIE53_004420at 608.624 kb on - strand, within ABIE53_004420at 608.624 kb on - strand, within ABIE53_004420at 608.652 kb on + strand, within ABIE53_004420at 608.660 kb on + strand, within ABIE53_004420at 608.660 kb on + strand, within ABIE53_004420at 608.661 kb on - strand, within ABIE53_004420at 608.740 kb on + strand, within ABIE53_004420at 608.768 kb on + strand, within ABIE53_004420at 608.768 kb on + strand, within ABIE53_004420at 608.819 kb on + strand, within ABIE53_004420at 608.962 kb on - strand, within ABIE53_004420at 609.091 kb on - strand, within ABIE53_004420at 609.091 kb on - strand, within ABIE53_004420at 609.109 kb on - strand, within ABIE53_004420at 609.159 kb on - strand, within ABIE53_004420at 609.184 kb on - strand, within ABIE53_004420at 609.184 kb on - strand, within ABIE53_004420at 609.190 kb on + strand, within ABIE53_004420at 609.190 kb on + strand, within ABIE53_004420at 609.190 kb on + strand, within ABIE53_004420at 609.190 kb on + strand, within ABIE53_004420at 609.190 kb on + strand, within ABIE53_004420at 609.191 kb on - strand, within ABIE53_004420at 609.191 kb on - strand, within ABIE53_004420at 609.191 kb on - strand, within ABIE53_004420at 609.191 kb on - strand, within ABIE53_004420at 609.705 kb on + strandat 609.740 kb on + strandat 609.822 kb on + strandat 609.822 kb on + strandat 609.822 kb on + strandat 609.823 kb on - strandat 609.861 kb on + strandat 609.861 kb on + strandat 609.861 kb on + strandat 609.861 kb on + strandat 609.862 kb on - strandat 609.862 kb on - strandat 609.862 kb on - strandat 609.867 kb on + strandat 609.867 kb on + strandat 609.867 kb on + strandat 609.867 kb on + strandat 610.035 kb on + strand, within ABIE53_004421at 610.035 kb on + strand, within ABIE53_004421at 610.035 kb on + strand, within ABIE53_004421at 610.036 kb on - strand, within ABIE53_004421at 610.036 kb on - strand, within ABIE53_004421at 610.036 kb on - strand, within ABIE53_004421at 610.145 kb on + strand, within ABIE53_004421at 610.145 kb on + strand, within ABIE53_004421at 610.145 kb on + strand, within ABIE53_004421at 610.145 kb on + strand, within ABIE53_004421at 610.145 kb on + strand, within ABIE53_004421at 610.145 kb on + strand, within ABIE53_004421at 610.145 kb on + strand, within ABIE53_004421at 610.145 kb on + strand, within ABIE53_004421at 610.146 kb on - strand, within ABIE53_004421at 610.146 kb on - strand, within ABIE53_004421at 610.146 kb on - strand, within ABIE53_004421at 610.149 kb on + strand, within ABIE53_004421at 610.149 kb on + strand, within ABIE53_004421at 610.149 kb on + strand, within ABIE53_004421at 610.149 kb on + strand, within ABIE53_004421at 610.150 kb on - strand, within ABIE53_004421at 610.150 kb on - strand, within ABIE53_004421at 610.150 kb on - strand, within ABIE53_004421at 610.150 kb on - strand, within ABIE53_004421at 610.255 kb on + strand, within ABIE53_004421at 610.255 kb on + strand, within ABIE53_004421at 610.255 kb on + strand, within ABIE53_004421at 610.313 kb on - strand, within ABIE53_004421at 610.313 kb on - strand, within ABIE53_004421at 610.386 kb on - strand, within ABIE53_004421at 610.486 kb on + strandat 610.487 kb on - strandat 610.487 kb on - strandat 610.487 kb on - strandat 610.565 kb on + strandat 610.565 kb on + strandat 610.566 kb on - strandat 610.566 kb on - strandat 610.566 kb on - strandat 610.566 kb on - strandat 610.566 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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607,449 + ABIE53_004419 0.15 -0.7
607,449 + ABIE53_004419 0.15 +3.0
607,450 - ABIE53_004419 0.15 -1.5
607,450 - ABIE53_004419 0.15 -0.9
607,450 - ABIE53_004419 0.15 +1.6
607,493 + ABIE53_004419 0.20 -1.0
607,494 - ABIE53_004419 0.20 +0.0
607,495 + ABIE53_004419 0.20 +0.0
607,495 + ABIE53_004419 0.20 +0.4
607,507 + ABIE53_004419 0.21 +0.8
607,507 + ABIE53_004419 0.21 +0.3
607,507 + ABIE53_004419 0.21 +4.3
607,508 - ABIE53_004419 0.21 -1.3
607,578 + ABIE53_004419 0.29 -0.7
607,578 + ABIE53_004419 0.29 -1.2
607,578 + ABIE53_004419 0.29 +2.1
607,579 - ABIE53_004419 0.29 +1.3
607,579 - ABIE53_004419 0.29 -0.9
607,612 - ABIE53_004419 0.32 -0.2
607,795 + ABIE53_004419 0.51 -0.2
607,795 + ABIE53_004419 0.51 -0.4
607,796 - ABIE53_004419 0.51 +0.3
607,796 - ABIE53_004419 0.51 -0.2
608,093 - ABIE53_004419 0.82 -0.4
608,093 - ABIE53_004419 0.82 +1.7
608,534 + ABIE53_004420 0.13 -0.9
608,534 + ABIE53_004420 0.13 +0.7
608,534 + ABIE53_004420 0.13 -1.0
608,534 + ABIE53_004420 0.13 +0.5
608,534 + ABIE53_004420 0.13 -0.3
608,534 + ABIE53_004420 0.13 -0.2
608,534 + ABIE53_004420 0.13 -1.0
608,535 - ABIE53_004420 0.13 +1.4
608,535 - ABIE53_004420 0.13 -0.7
608,535 - ABIE53_004420 0.13 +0.1
608,592 - ABIE53_004420 0.17 +0.2
608,592 - ABIE53_004420 0.17 -0.9
608,617 + ABIE53_004420 0.19 -0.2
608,618 - ABIE53_004420 0.19 -1.4
608,618 - ABIE53_004420 0.19 -0.2
608,623 + ABIE53_004420 0.20 -1.0
608,623 + ABIE53_004420 0.20 -0.5
608,624 - ABIE53_004420 0.20 -0.9
608,624 - ABIE53_004420 0.20 +2.1
608,652 + ABIE53_004420 0.22 +1.1
608,660 + ABIE53_004420 0.22 -1.3
608,660 + ABIE53_004420 0.22 -1.4
608,661 - ABIE53_004420 0.23 -0.3
608,740 + ABIE53_004420 0.28 +0.1
608,768 + ABIE53_004420 0.30 -0.4
608,768 + ABIE53_004420 0.30 +0.7
608,819 + ABIE53_004420 0.34 -2.0
608,962 - ABIE53_004420 0.45 +0.4
609,091 - ABIE53_004420 0.55 +1.7
609,091 - ABIE53_004420 0.55 +0.6
609,109 - ABIE53_004420 0.56 -0.4
609,159 - ABIE53_004420 0.60 -0.7
609,184 - ABIE53_004420 0.62 -0.4
609,184 - ABIE53_004420 0.62 +0.6
609,190 + ABIE53_004420 0.62 -0.4
609,190 + ABIE53_004420 0.62 +0.6
609,190 + ABIE53_004420 0.62 +1.1
609,190 + ABIE53_004420 0.62 +0.1
609,190 + ABIE53_004420 0.62 +0.4
609,191 - ABIE53_004420 0.62 +0.0
609,191 - ABIE53_004420 0.62 +1.1
609,191 - ABIE53_004420 0.62 -0.2
609,191 - ABIE53_004420 0.62 +2.1
609,705 + +0.2
609,740 + +0.2
609,822 + -1.7
609,822 + -1.2
609,822 + -1.3
609,823 - +0.8
609,861 + -2.0
609,861 + -0.8
609,861 + -0.6
609,861 + +0.1
609,862 - -1.9
609,862 - +0.1
609,862 - -0.6
609,867 + -0.2
609,867 + +1.3
609,867 + -0.4
609,867 + -1.6
610,035 + ABIE53_004421 0.30 -0.5
610,035 + ABIE53_004421 0.30 +1.0
610,035 + ABIE53_004421 0.30 -2.0
610,036 - ABIE53_004421 0.30 +0.7
610,036 - ABIE53_004421 0.30 -0.5
610,036 - ABIE53_004421 0.30 -0.3
610,145 + ABIE53_004421 0.48 +1.9
610,145 + ABIE53_004421 0.48 -1.2
610,145 + ABIE53_004421 0.48 -0.9
610,145 + ABIE53_004421 0.48 +1.1
610,145 + ABIE53_004421 0.48 +0.9
610,145 + ABIE53_004421 0.48 +0.7
610,145 + ABIE53_004421 0.48 -0.2
610,145 + ABIE53_004421 0.48 +1.0
610,146 - ABIE53_004421 0.48 -0.2
610,146 - ABIE53_004421 0.48 -0.9
610,146 - ABIE53_004421 0.48 +2.1
610,149 + ABIE53_004421 0.49 -0.4
610,149 + ABIE53_004421 0.49 +0.0
610,149 + ABIE53_004421 0.49 -1.8
610,149 + ABIE53_004421 0.49 +1.1
610,150 - ABIE53_004421 0.49 +2.1
610,150 - ABIE53_004421 0.49 +0.3
610,150 - ABIE53_004421 0.49 -0.2
610,150 - ABIE53_004421 0.49 +2.1
610,255 + ABIE53_004421 0.66 +1.1
610,255 + ABIE53_004421 0.66 -0.3
610,255 + ABIE53_004421 0.66 +3.1
610,313 - ABIE53_004421 0.76 -0.7
610,313 - ABIE53_004421 0.76 +2.3
610,386 - ABIE53_004421 0.88 -0.2
610,486 + +0.8
610,487 - -1.0
610,487 - +0.1
610,487 - -1.4
610,565 + +2.6
610,565 + -0.3
610,566 - -0.6
610,566 - -0.9
610,566 - +1.1
610,566 - +0.6
610,566 - -1.1

Or see this region's nucleotide sequence