Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 10 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04765 and MMP_RS04770 are separated by 97 nucleotides MMP_RS04770 and MMP_RS04775 are separated by 31 nucleotides
MMP_RS04765: MMP_RS04765 - asparagine synthase (glutamine-hydrolyzing), at 906,776 to 908,317
_RS04765
MMP_RS04770: MMP_RS04770 - dihydroorotate dehydrogenase electron transfer subunit, at 908,415 to 909,182
_RS04770
MMP_RS04775: MMP_RS04775 - adenosylhomocysteinase, at 909,214 to 910,461
_RS04775
Position (kb) 908
909
910 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 907.506 kb on - strand at 907.507 kb on + strand at 907.507 kb on + strand at 907.545 kb on + strand at 907.587 kb on + strand at 907.675 kb on - strand at 907.676 kb on + strand at 907.706 kb on + strand at 907.813 kb on + strand at 907.855 kb on - strand at 907.901 kb on - strand at 907.913 kb on - strand at 907.913 kb on - strand at 907.930 kb on - strand at 907.930 kb on - strand at 907.931 kb on + strand at 908.039 kb on + strand at 908.051 kb on + strand at 908.160 kb on - strand at 908.161 kb on + strand at 908.231 kb on - strand at 908.231 kb on - strand at 908.232 kb on + strand at 908.294 kb on - strand at 908.322 kb on + strand at 908.362 kb on - strand at 908.376 kb on + strand at 908.376 kb on + strand at 908.376 kb on + strand at 908.376 kb on + strand at 908.377 kb on - strand at 908.377 kb on - strand at 908.377 kb on - strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.381 kb on - strand at 908.381 kb on - strand at 908.382 kb on + strand at 908.418 kb on - strand at 908.418 kb on - strand at 908.463 kb on - strand at 908.570 kb on + strand at 908.654 kb on - strand at 908.658 kb on - strand at 908.659 kb on + strand at 908.864 kb on - strand at 909.183 kb on + strand at 909.185 kb on - strand at 909.243 kb on + strand at 909.388 kb on - strand, within MMP_RS04775 at 909.388 kb on - strand, within MMP_RS04775 at 909.389 kb on + strand, within MMP_RS04775 at 909.598 kb on - strand, within MMP_RS04775 at 909.868 kb on + strand, within MMP_RS04775 at 909.874 kb on - strand, within MMP_RS04775 at 909.933 kb on - strand at 910.015 kb on + strand, within MMP_RS04775 at 910.015 kb on + strand, within MMP_RS04775
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 10 generations remove 907,506 - -4.9 907,507 + -3.4 907,507 + -3.3 907,545 + -3.9 907,587 + -2.5 907,675 - -4.1 907,676 + -4.2 907,706 + -2.2 907,813 + -5.6 907,855 - -3.7 907,901 - -4.7 907,913 - -4.4 907,913 - -4.7 907,930 - -3.8 907,930 - -4.2 907,931 + -3.6 908,039 + -4.8 908,051 + -4.4 908,160 - -4.0 908,161 + -4.4 908,231 - -4.8 908,231 - -3.1 908,232 + -1.9 908,294 - -4.4 908,322 + -3.5 908,362 - -3.2 908,376 + -3.7 908,376 + -4.0 908,376 + -5.5 908,376 + -3.9 908,377 - -2.9 908,377 - -3.6 908,377 - -3.1 908,378 + -3.9 908,378 + -3.2 908,378 + -2.7 908,378 + -2.8 908,378 + -4.9 908,381 - -1.4 908,381 - -1.7 908,382 + -3.6 908,418 - -0.6 908,418 - +0.4 908,463 - -3.2 908,570 + -3.7 908,654 - -3.0 908,658 - -3.6 908,659 + -3.4 908,864 - -2.3 909,183 + -2.3 909,185 - -4.3 909,243 + -4.0 909,388 - MMP_RS04775 0.14 -4.9 909,388 - MMP_RS04775 0.14 -4.3 909,389 + MMP_RS04775 0.14 -2.8 909,598 - MMP_RS04775 0.31 -2.9 909,868 + MMP_RS04775 0.52 -1.7 909,874 - MMP_RS04775 0.53 -4.2 909,933 - -2.1 910,015 + MMP_RS04775 0.64 -2.8 910,015 + MMP_RS04775 0.64 -4.2
Or see this region's nucleotide sequence