Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09065

Experiment: Formate pooled triplicate planktonic cells

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate pooled triplicate planktonic cells
1,674,113	+				-3.5
1,674,117	+				-1.9
1,674,117	+				-2.6
1,674,173	+				-2.6
1,674,346	-				-0.5
1,674,346	-				-0.2
1,674,347	+				+0.0
1,674,347	+				-0.8
1,674,350	-				-0.5
1,674,350	-				-0.8
1,674,355	+				+1.4
1,674,355	+				-0.2
1,674,361	-				-0.0
1,674,361	-				+0.0
1,674,361	-				-0.3
1,674,361	-				+0.0
1,674,362	+				-0.9
1,674,362	+				-0.3
1,674,370	-				+0.1
1,674,370	-				-2.3
1,674,379	+				-0.4
1,674,381	-				-1.3
1,674,381	-				-0.3
1,674,389	-				-0.1
1,674,389	-				-0.0
1,674,389	-				+0.0
1,674,390	+				-0.0
1,674,390	+				-0.6
1,674,390	+				-0.2
1,674,401	-				-0.6
1,674,410	+				-0.1
1,674,417	-				+0.3
1,674,418	+				-0.0
1,674,419	-				-0.1
1,674,419	-				+2.0
1,674,420	+				-0.2
1,674,420	+				+0.5
1,674,420	+				-0.2
1,674,422	+				-0.0
1,674,431	+				+0.2
1,674,432	-				-0.1
1,674,433	+				-0.1
1,674,433	+				-0.9
1,674,435	-				-0.3
1,674,435	-				+0.1
1,674,435	-				+0.2
1,674,435	-				-0.1
1,674,435	-				-0.6
1,674,436	+				+0.2
1,674,436	+				-0.0
1,674,436	+				-0.1
1,674,440	-				-0.4
1,674,441	+				+0.5
1,674,441	+				-0.9
1,674,442	-				+0.2
1,674,442	-				+2.8
1,674,443	+				+0.2
1,674,443	+				+0.3
1,674,443	+				-0.9
1,674,443	+				-0.6
1,674,443	+				+0.2
1,674,446	-				-0.7
1,674,446	-				+0.5
1,674,446	-				+0.1
1,674,446	-				-0.3
1,674,446	-				-1.0
1,674,446	-				-0.4
1,674,446	-				+0.6
1,674,447	+				+0.2
1,674,447	+				+0.2
1,674,447	+				-0.1
1,674,487	-				+0.5
1,674,492	+				+0.1
1,674,492	+				-0.6
1,674,521	+				+0.7
1,674,537	-				-0.6
1,674,540	+				+0.9
1,674,547	+				+0.5
1,674,547	+				+0.0
1,674,592	-				-0.8
1,674,593	+				-0.3
1,674,605	-				-0.5
1,674,631	+		MMJJ_RS09060	0.15	-0.0
1,674,643	+		MMJJ_RS09060	0.20	+0.3
1,674,657	-		MMJJ_RS09060	0.26	-0.6
1,674,657	-		MMJJ_RS09060	0.26	+0.3
1,674,678	-		MMJJ_RS09060	0.36	-0.3
1,674,687	-		MMJJ_RS09060	0.39	+0.5
1,674,687	-		MMJJ_RS09060	0.39	+0.3
1,674,687	-		MMJJ_RS09060	0.39	+0.2
1,674,688	+		MMJJ_RS09060	0.40	+0.3
1,674,688	+		MMJJ_RS09060	0.40	+0.3
1,674,688	+		MMJJ_RS09060	0.40	+0.3
1,674,689	-		MMJJ_RS09060	0.40	-1.3
1,674,689	-		MMJJ_RS09060	0.40	-0.2
1,674,689	-		MMJJ_RS09060	0.40	+0.2
1,674,689	-		MMJJ_RS09060	0.40	-1.6
1,674,689	-		MMJJ_RS09060	0.40	+0.2
1,674,690	+		MMJJ_RS09060	0.41	-0.5
1,674,690	+		MMJJ_RS09060	0.41	-0.3
1,674,690	+		MMJJ_RS09060	0.41	+0.0
1,674,690	+		MMJJ_RS09060	0.41	+0.6
1,674,690	+		MMJJ_RS09060	0.41	+0.4
1,674,690	+		MMJJ_RS09060	0.41	+0.1
1,674,690	+		MMJJ_RS09060	0.41	-0.1
1,674,691	-		MMJJ_RS09060	0.41	-0.2
1,674,691	-		MMJJ_RS09060	0.41	-0.4
1,674,691	-		MMJJ_RS09060	0.41	+0.8
1,674,692	+		MMJJ_RS09060	0.42	-2.0
1,674,692	+		MMJJ_RS09060	0.42	+0.0
1,674,692	+		MMJJ_RS09060	0.42	+0.8
1,674,732	-		MMJJ_RS09060	0.59	+0.2
1,674,754	+		MMJJ_RS09060	0.69	+0.3
1,674,775	-		MMJJ_RS09060	0.78	+0.5
1,674,827	-				-0.1
1,674,828	+				+0.2
1,674,867	+				+1.0
1,674,877	+				+0.0
1,674,878	-				+0.6
1,674,917	-				-0.3
1,674,957	+				+0.0
1,674,983	-				+0.2
1,674,983	-				+0.1
1,674,983	-				-0.2
1,674,984	+				-0.6
1,674,985	-				+0.7
1,674,986	+				+0.2
1,674,997	-				+0.5
1,674,997	-				+0.0
1,675,001	-				+0.4
1,675,001	-				-0.7
1,675,001	-				+0.5
1,675,001	-				-0.5
1,675,001	-				-0.5
1,675,001	-				+0.1
1,675,002	+				-0.1
1,675,002	+				-1.0
1,675,002	+				+0.5
1,675,017	-				-0.7
1,675,017	-				+0.4
1,675,021	-				-0.2
1,675,021	-				-0.3
1,675,081	-				-0.0
1,675,098	+				+0.2
1,675,145	+		MMJJ_RS09065	0.16	-0.4
1,675,153	+		MMJJ_RS09065	0.18	+0.2
1,675,153	+		MMJJ_RS09065	0.18	-0.2
1,675,159	-		MMJJ_RS09065	0.19	+0.1
1,675,235	+		MMJJ_RS09065	0.33	+0.2
1,675,235	+		MMJJ_RS09065	0.33	-0.4
1,675,253	-		MMJJ_RS09065	0.36	-0.2
1,675,357	-		MMJJ_RS09065	0.55	-0.6
1,675,359	-		MMJJ_RS09065	0.55	+0.3
1,675,359	-		MMJJ_RS09065	0.55	+0.1
1,675,383	-		MMJJ_RS09065	0.59	+3.1
1,675,384	+		MMJJ_RS09065	0.60	+0.9
1,675,384	+		MMJJ_RS09065	0.60	+0.6
1,675,384	+		MMJJ_RS09065	0.60	-0.1
1,675,384	+		MMJJ_RS09065	0.60	+0.2
1,675,412	-		MMJJ_RS09065	0.65	+0.6
1,675,412	-		MMJJ_RS09065	0.65	-0.3
1,675,473	-		MMJJ_RS09065	0.76	+0.6
1,675,531	+		MMJJ_RS09065	0.86	+0.7
1,675,547	+		MMJJ_RS09065	0.89	-0.5
1,675,585	+				+0.1
1,675,619	-				+0.1
1,675,619	-				+1.1
1,675,620	+				-0.0
1,675,621	-				+0.2
1,675,622	+				+0.0
1,675,649	-				-0.0
1,675,652	+				-0.0
1,675,652	+				-0.2
1,675,652	+				-0.4
1,675,652	+				+0.5
1,675,653	-				+0.7
1,675,653	-				-1.0
1,675,653	-				+2.0
1,675,654	+				+0.1
1,675,654	+				+0.1
1,675,668	-				+0.1
1,675,668	-				+0.1
1,675,674	-				+0.7
1,675,674	-				+0.1
1,675,674	-				+0.1
1,675,674	-				+0.4
1,675,675	+				-0.3
1,675,675	+				-0.6
1,675,675	+				+0.8
1,675,687	-				+0.2
1,675,687	-				-1.1
1,675,687	-				-1.8
1,675,687	-				-0.6
1,675,688	+				+0.5
1,675,688	+				+3.5
1,675,688	+				+0.6
1,675,688	+				-0.1
1,675,694	-				-0.2
1,675,702	+				+0.2
1,675,703	-				+0.3
1,675,704	+				-0.3
1,675,704	+				-0.3
1,675,704	+				-0.0
1,675,704	+				-0.6
1,675,712	+				-0.6
1,675,712	+				-2.0
1,675,756	-				-0.0
1,675,756	-				-0.1
1,675,756	-				+0.5
1,675,756	-				-0.6
1,675,757	+				+0.1
1,675,764	+				+0.1
1,675,778	+				+0.2
1,675,778	+				+0.1
1,675,809	+				+0.5
1,675,820	-				-1.0
1,675,820	-				-0.7
1,675,820	-				-0.1
1,675,821	+				+0.1
1,675,821	+				+0.7
1,675,821	+				-0.9
1,675,821	+				+0.4
1,675,821	+				+0.3
1,675,821	+				+1.0
1,675,821	+				+0.6
1,675,821	+				-0.2
1,675,821	+				-0.3
1,675,821	+				+0.1
1,675,821	+				+0.1
1,675,821	+				+0.3
1,675,898	-				-0.0
1,675,898	-				-0.6
1,675,898	-				+0.7
1,675,899	+				-0.9
1,675,900	-				-0.2
1,675,903	-				+0.6
1,675,903	-				-0.1
1,675,903	-				+0.6
1,675,903	-				-0.1
1,675,904	+				+0.2
1,675,904	+				+0.5
1,675,904	+				-0.7
1,675,979	-		MMJJ_RS09070	0.22	-0.4
1,675,979	-		MMJJ_RS09070	0.22	+0.4
1,675,979	-		MMJJ_RS09070	0.22	+0.0
1,675,980	+		MMJJ_RS09070	0.22	-0.0
1,675,980	+		MMJJ_RS09070	0.22	-0.2
1,675,981	-		MMJJ_RS09070	0.23	-0.1
1,675,981	-		MMJJ_RS09070	0.23	+0.7
1,675,994	+		MMJJ_RS09070	0.30	+0.0
1,676,020	-		MMJJ_RS09070	0.44	-0.2
1,676,020	-		MMJJ_RS09070	0.44	-0.2
1,676,021	+		MMJJ_RS09070	0.44	+0.1
1,676,021	+		MMJJ_RS09070	0.44	+0.7
1,676,022	-		MMJJ_RS09070	0.45	+0.5
1,676,022	-		MMJJ_RS09070	0.45	-1.3
1,676,023	+		MMJJ_RS09070	0.45	-0.5
1,676,023	+		MMJJ_RS09070	0.45	+0.2
1,676,116	+				+0.3
1,676,159	-				+1.6
1,676,160	+				+0.1
1,676,160	+				+0.1
1,676,160	+				-0.2
1,676,165	+				-0.6
1,676,168	-				+1.2
1,676,179	+				-0.7
1,676,180	-				-0.0
1,676,181	+				+1.0
1,676,201	+				+0.3
1,676,205	+				+0.3
1,676,213	+				-0.3
1,676,215	-				+0.3
1,676,216	+				-0.2
1,676,220	+				+0.0
1,676,220	+				-0.3
1,676,220	+				+1.5
1,676,229	-				+0.1
1,676,236	+				-0.2
1,676,236	+				+0.5
1,676,239	+				-1.6
1,676,246	+				-0.6
1,676,261	-				-0.7
1,676,265	-				-0.2
1,676,265	-				+0.4
1,676,265	-				-0.4
1,676,266	+				+1.2
1,676,266	+				-0.5
1,676,266	+				-0.3
1,676,266	+				+0.2
1,676,266	+				+0.5
1,676,267	-				+0.0
1,676,267	-				+0.1
1,676,268	+				+0.3
1,676,268	+				+2.0
1,676,268	+				-0.7
1,676,271	-				-2.0
1,676,272	+				-1.4
1,676,272	+				-1.6
1,676,604	+		MMJJ_RS09075	0.15	-2.3