Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08735

Experiment: Formate pooled triplicate planktonic cells

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate pooled triplicate planktonic cells
1,608,390	-				-0.7
1,608,391	+				+0.1
1,608,411	+				-0.1
1,608,445	-		MMJJ_RS08730	0.12	-1.2
1,608,452	-		MMJJ_RS08730	0.13	-0.5
1,608,466	-		MMJJ_RS08730	0.14	-0.1
1,608,468	-		MMJJ_RS08730	0.14	-0.7
1,608,468	-		MMJJ_RS08730	0.14	-0.7
1,608,468	-		MMJJ_RS08730	0.14	-0.7
1,608,468	-		MMJJ_RS08730	0.14	-0.1
1,608,469	+		MMJJ_RS08730	0.14	+2.4
1,608,469	+		MMJJ_RS08730	0.14	+0.5
1,608,469	+		MMJJ_RS08730	0.14	+1.1
1,608,476	+		MMJJ_RS08730	0.15	+0.1
1,608,477	-		MMJJ_RS08730	0.15	-0.3
1,608,477	-		MMJJ_RS08730	0.15	-0.7
1,608,478	+		MMJJ_RS08730	0.15	-1.0
1,608,478	+		MMJJ_RS08730	0.15	+1.8
1,608,503	+		MMJJ_RS08730	0.17	-0.1
1,608,537	-		MMJJ_RS08730	0.21	+1.0
1,608,537	-		MMJJ_RS08730	0.21	-0.1
1,608,539	-		MMJJ_RS08730	0.21	-1.0
1,608,548	-		MMJJ_RS08730	0.22	-0.6
1,608,549	+		MMJJ_RS08730	0.22	+0.3
1,608,592	-		MMJJ_RS08730	0.26	-1.2
1,608,609	-		MMJJ_RS08730	0.27	+0.7
1,608,610	+		MMJJ_RS08730	0.28	-0.7
1,608,637	+		MMJJ_RS08730	0.30	-0.6
1,608,642	+		MMJJ_RS08730	0.31	-0.2
1,608,746	-		MMJJ_RS08730	0.40	-0.8
1,608,753	+		MMJJ_RS08730	0.41	-0.8
1,608,799	+		MMJJ_RS08730	0.45	+0.3
1,608,852	-		MMJJ_RS08730	0.50	-1.9
1,608,853	+		MMJJ_RS08730	0.50	-1.2
1,608,853	+		MMJJ_RS08730	0.50	+0.2
1,608,853	+		MMJJ_RS08730	0.50	-0.6
1,608,886	-		MMJJ_RS08730	0.53	+1.3
1,608,910	-		MMJJ_RS08730	0.56	-1.3
1,608,925	-		MMJJ_RS08730	0.57	+1.6
1,608,926	+		MMJJ_RS08730	0.57	-0.0
1,608,973	+		MMJJ_RS08730	0.62	+3.3
1,608,978	+		MMJJ_RS08730	0.62	+0.4
1,608,978	+		MMJJ_RS08730	0.62	+2.0
1,609,028	+		MMJJ_RS08730	0.67	-0.3
1,609,028	+		MMJJ_RS08730	0.67	-0.2
1,609,032	-		MMJJ_RS08730	0.67	-0.5
1,609,032	-		MMJJ_RS08730	0.67	+0.6
1,609,032	-		MMJJ_RS08730	0.67	-0.2
1,609,032	-		MMJJ_RS08730	0.67	-0.1
1,609,033	+		MMJJ_RS08730	0.67	-0.2
1,609,033	+		MMJJ_RS08730	0.67	-0.6
1,609,036	-		MMJJ_RS08730	0.68	+0.2
1,609,037	+		MMJJ_RS08730	0.68	+0.2
1,609,040	-		MMJJ_RS08730	0.68	-0.1
1,609,040	-		MMJJ_RS08730	0.68	+0.0
1,609,040	-		MMJJ_RS08730	0.68	+0.7
1,609,041	+		MMJJ_RS08730	0.68	-0.1
1,609,041	+		MMJJ_RS08730	0.68	-0.8
1,609,041	+		MMJJ_RS08730	0.68	-0.6
1,609,041	+		MMJJ_RS08730	0.68	-0.5
1,609,042	-		MMJJ_RS08730	0.68	-0.0
1,609,042	-		MMJJ_RS08730	0.68	+0.2
1,609,042	-		MMJJ_RS08730	0.68	+0.3
1,609,054	-		MMJJ_RS08730	0.69	-0.2
1,609,066	+		MMJJ_RS08730	0.70	-1.1
1,609,189	+		MMJJ_RS08730	0.82	-0.3
1,609,194	+		MMJJ_RS08730	0.82	-0.1
1,609,194	+		MMJJ_RS08730	0.82	-1.8
1,609,194	+		MMJJ_RS08730	0.82	-2.3
1,609,249	-		MMJJ_RS08730	0.88	-2.0
1,609,249	-		MMJJ_RS08730	0.88	+1.0
1,609,292	+				-0.3
1,609,299	-				-0.3
1,609,305	+				-0.3
1,609,334	-				-0.4
1,609,335	+				-2.6
1,609,336	-				-0.1
1,609,337	+				-0.4
1,609,351	-				-1.0
1,609,352	+				+1.3
1,609,400	+				-0.3
1,609,433	-				+0.3
1,609,433	-				+0.6
1,609,435	-				-0.2
1,609,435	-				+0.3
1,609,455	-		MMJJ_RS08735	0.11	+0.4
1,609,475	-		MMJJ_RS08735	0.13	+0.0
1,609,476	+		MMJJ_RS08735	0.14	-0.2
1,609,510	-		MMJJ_RS08735	0.18	-0.0
1,609,511	+		MMJJ_RS08735	0.18	-0.1
1,609,511	+		MMJJ_RS08735	0.18	+2.3
1,609,514	-		MMJJ_RS08735	0.19	+0.4
1,609,515	+		MMJJ_RS08735	0.19	+0.3
1,609,580	+		MMJJ_RS08735	0.27	-0.7
1,609,610	+		MMJJ_RS08735	0.31	-0.4
1,609,610	+		MMJJ_RS08735	0.31	+2.1
1,609,652	-		MMJJ_RS08735	0.37	-0.6
1,609,714	+		MMJJ_RS08735	0.45	+0.4
1,609,718	-		MMJJ_RS08735	0.46	+0.4
1,609,718	-		MMJJ_RS08735	0.46	+0.7
1,609,718	-		MMJJ_RS08735	0.46	+0.5
1,609,718	-		MMJJ_RS08735	0.46	+1.8
1,609,718	-		MMJJ_RS08735	0.46	+0.2
1,609,718	-		MMJJ_RS08735	0.46	+0.2
1,609,719	+		MMJJ_RS08735	0.46	+0.1
1,609,719	+		MMJJ_RS08735	0.46	-0.8
1,609,719	+		MMJJ_RS08735	0.46	+0.3
1,609,719	+		MMJJ_RS08735	0.46	+0.1
1,609,719	+		MMJJ_RS08735	0.46	-1.4
1,609,719	+		MMJJ_RS08735	0.46	+0.5
1,609,719	+		MMJJ_RS08735	0.46	+0.8
1,609,719	+		MMJJ_RS08735	0.46	-0.2
1,609,719	+		MMJJ_RS08735	0.46	-0.6
1,609,719	+		MMJJ_RS08735	0.46	+0.3
1,609,719	+		MMJJ_RS08735	0.46	-0.6
1,609,719	+		MMJJ_RS08735	0.46	+0.6
1,609,719	+		MMJJ_RS08735	0.46	+0.1
1,609,720	-		MMJJ_RS08735	0.46	+0.0
1,609,733	-		MMJJ_RS08735	0.48	+0.2
1,609,734	+		MMJJ_RS08735	0.48	+0.0
1,609,750	-		MMJJ_RS08735	0.50	+0.3
1,609,750	-		MMJJ_RS08735	0.50	-0.2
1,609,751	+		MMJJ_RS08735	0.50	+1.1
1,609,751	+		MMJJ_RS08735	0.50	+1.0
1,609,751	+		MMJJ_RS08735	0.50	+0.1
1,609,751	+		MMJJ_RS08735	0.50	+0.2
1,609,759	-		MMJJ_RS08735	0.51	-0.0
1,609,759	-		MMJJ_RS08735	0.51	+1.6
1,609,760	+		MMJJ_RS08735	0.51	+0.1
1,609,775	+		MMJJ_RS08735	0.53	-0.2
1,609,775	+		MMJJ_RS08735	0.53	+0.5
1,609,780	+		MMJJ_RS08735	0.54	+0.2
1,609,788	-		MMJJ_RS08735	0.55	-0.2
1,609,805	+		MMJJ_RS08735	0.57	+0.0
1,609,860	-		MMJJ_RS08735	0.65	-1.4
1,609,860	-		MMJJ_RS08735	0.65	+0.1
1,609,860	-		MMJJ_RS08735	0.65	+0.1
1,609,872	+		MMJJ_RS08735	0.66	+3.3
1,609,945	+		MMJJ_RS08735	0.76	-0.1
1,609,960	-		MMJJ_RS08735	0.78	+0.4
1,609,960	-		MMJJ_RS08735	0.78	+0.5
1,609,961	+		MMJJ_RS08735	0.78	+3.3
1,609,961	+		MMJJ_RS08735	0.78	+1.1
1,609,961	+		MMJJ_RS08735	0.78	-0.3
1,609,961	+		MMJJ_RS08735	0.78	-0.6
1,609,961	+		MMJJ_RS08735	0.78	+0.2
1,609,969	-		MMJJ_RS08735	0.79	+1.0
1,609,976	-		MMJJ_RS08735	0.80	+0.0
1,609,977	+		MMJJ_RS08735	0.80	-0.4
1,610,017	-		MMJJ_RS08735	0.86	-0.0
1,610,018	+		MMJJ_RS08735	0.86	+0.6
1,610,087	+				-0.4
1,610,112	+				-1.2
1,610,117	+				-0.2
1,610,119	-				-0.3
1,610,120	+				-0.3
1,610,128	-				-1.0
1,610,148	+				-0.2
1,610,159	-				+0.1
1,610,190	-				-1.2
1,610,223	-				+0.1
1,610,224	+				-0.6
1,610,224	+				-0.0
1,610,224	+				-0.1
1,610,224	+				-0.9
1,610,241	-		MMJJ_RS08740	0.10	+0.7
1,610,241	-		MMJJ_RS08740	0.10	+0.9
1,610,242	+		MMJJ_RS08740	0.11	-0.7
1,610,305	-		MMJJ_RS08740	0.20	-0.2
1,610,306	+		MMJJ_RS08740	0.20	-0.1
1,610,306	+		MMJJ_RS08740	0.20	-0.9
1,610,309	-		MMJJ_RS08740	0.20	-0.4
1,610,309	-		MMJJ_RS08740	0.20	+0.4
1,610,309	-		MMJJ_RS08740	0.20	-0.5
1,610,310	+		MMJJ_RS08740	0.21	+1.1
1,610,310	+		MMJJ_RS08740	0.21	-0.2
1,610,310	+		MMJJ_RS08740	0.21	-0.9
1,610,310	+		MMJJ_RS08740	0.21	+0.4
1,610,310	+		MMJJ_RS08740	0.21	-0.8
1,610,310	+		MMJJ_RS08740	0.21	+0.9
1,610,344	+		MMJJ_RS08740	0.26	+2.3
1,610,346	-		MMJJ_RS08740	0.26	-0.3
1,610,381	-		MMJJ_RS08740	0.31	+0.1
1,610,395	-		MMJJ_RS08740	0.33	+0.5
1,610,396	+		MMJJ_RS08740	0.33	-0.1
1,610,422	-		MMJJ_RS08740	0.37	-0.3
1,610,423	+		MMJJ_RS08740	0.37	-0.0
1,610,427	-		MMJJ_RS08740	0.38	+0.1
1,610,428	+		MMJJ_RS08740	0.38	-1.0
1,610,503	-		MMJJ_RS08740	0.49	+0.3
1,610,546	-		MMJJ_RS08740	0.56	-0.2
1,610,546	-		MMJJ_RS08740	0.56	+0.1
1,610,547	+		MMJJ_RS08740	0.56	-1.1
1,610,561	-		MMJJ_RS08740	0.58	+0.5
1,610,565	+		MMJJ_RS08740	0.58	+0.1
1,610,565	+		MMJJ_RS08740	0.58	-0.4
1,610,565	+		MMJJ_RS08740	0.58	-0.2
1,610,576	-		MMJJ_RS08740	0.60	-0.2
1,610,576	-		MMJJ_RS08740	0.60	+1.1
1,610,577	+		MMJJ_RS08740	0.60	-0.1
1,610,577	+		MMJJ_RS08740	0.60	+0.2
1,610,577	+		MMJJ_RS08740	0.60	+0.6
1,610,578	-		MMJJ_RS08740	0.60	-0.1
1,610,579	+		MMJJ_RS08740	0.60	+0.5
1,610,579	+		MMJJ_RS08740	0.60	-0.1
1,610,579	+		MMJJ_RS08740	0.60	-0.6
1,610,594	+		MMJJ_RS08740	0.63	+0.1
1,610,622	-		MMJJ_RS08740	0.67	-0.0
1,610,622	-		MMJJ_RS08740	0.67	-0.5
1,610,622	-		MMJJ_RS08740	0.67	+0.1
1,610,623	+		MMJJ_RS08740	0.67	-0.2
1,610,623	+		MMJJ_RS08740	0.67	+1.6
1,610,623	+		MMJJ_RS08740	0.67	-0.2
1,610,623	+		MMJJ_RS08740	0.67	-1.4
1,610,630	-		MMJJ_RS08740	0.68	+0.2
1,610,630	-		MMJJ_RS08740	0.68	+0.0
1,610,630	-		MMJJ_RS08740	0.68	+0.1
1,610,630	-		MMJJ_RS08740	0.68	-0.2
1,610,631	+		MMJJ_RS08740	0.68	-0.3
1,610,722	+		MMJJ_RS08740	0.82	+0.5
1,610,739	-		MMJJ_RS08740	0.84	+1.5
1,610,739	-		MMJJ_RS08740	0.84	-0.7
1,610,739	-		MMJJ_RS08740	0.84	+0.2
1,610,749	+		MMJJ_RS08740	0.86	+0.0
1,610,752	+		MMJJ_RS08740	0.86	+1.7
1,610,752	+		MMJJ_RS08740	0.86	+0.2
1,610,762	+		MMJJ_RS08740	0.88	-0.0
1,610,793	-				-0.1
1,610,793	-				+0.4
1,610,794	+				-1.0
1,610,794	+				+0.3
1,610,796	+				-0.6
1,610,809	+				-0.3
1,610,809	+				-0.3
1,610,829	-				-0.4
1,610,863	+				+0.7
1,610,871	+				+0.1
1,610,873	-				-1.6
1,610,874	+				+0.6
1,610,935	+				+0.2
1,610,972	-		MMJJ_RS08745	0.10	+0.6
1,611,024	-		MMJJ_RS08745	0.15	+0.7
1,611,048	+		MMJJ_RS08745	0.17	+0.4
1,611,053	-		MMJJ_RS08745	0.18	+1.2
1,611,112	-		MMJJ_RS08745	0.24	-0.0
1,611,112	-		MMJJ_RS08745	0.24	+1.6
1,611,120	-		MMJJ_RS08745	0.24	+0.3
1,611,120	-		MMJJ_RS08745	0.24	-0.7
1,611,121	+		MMJJ_RS08745	0.24	-0.9
1,611,121	+		MMJJ_RS08745	0.24	-0.2