Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08350

Experiment: Formate pooled triplicate planktonic cells

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate pooled triplicate planktonic cells
1,537,796	+		MMJJ_RS08340	0.71	-3.0
1,537,817	+		MMJJ_RS08340	0.75	-0.8
1,537,820	-		MMJJ_RS08340	0.76	-3.6
1,537,846	+		MMJJ_RS08340	0.80	-2.7
1,537,850	+		MMJJ_RS08340	0.81	-3.6
1,537,860	+		MMJJ_RS08340	0.83	-0.4
1,537,895	+		MMJJ_RS08340	0.89	-2.7
1,537,943	-				-3.2
1,538,008	+				+0.1
1,538,074	+		MMJJ_RS08345	0.20	-2.6
1,538,085	-		MMJJ_RS08345	0.22	+0.4
1,538,108	+		MMJJ_RS08345	0.25	+0.2
1,538,126	+		MMJJ_RS08345	0.28	-0.3
1,538,126	+		MMJJ_RS08345	0.28	-0.6
1,538,126	+		MMJJ_RS08345	0.28	-1.0
1,538,128	-		MMJJ_RS08345	0.29	+0.1
1,538,132	-		MMJJ_RS08345	0.29	+0.4
1,538,133	+		MMJJ_RS08345	0.30	+0.2
1,538,152	-		MMJJ_RS08345	0.33	+0.2
1,538,152	-		MMJJ_RS08345	0.33	+0.9
1,538,155	-		MMJJ_RS08345	0.33	+0.7
1,538,212	+		MMJJ_RS08345	0.43	-0.1
1,538,227	-		MMJJ_RS08345	0.45	+0.5
1,538,227	-		MMJJ_RS08345	0.45	+0.3
1,538,227	-		MMJJ_RS08345	0.45	+0.1
1,538,228	+		MMJJ_RS08345	0.46	-0.0
1,538,228	+		MMJJ_RS08345	0.46	-0.4
1,538,228	+		MMJJ_RS08345	0.46	+0.4
1,538,228	+		MMJJ_RS08345	0.46	+0.1
1,538,228	+		MMJJ_RS08345	0.46	+1.1
1,538,228	+		MMJJ_RS08345	0.46	-0.5
1,538,228	+		MMJJ_RS08345	0.46	-2.0
1,538,243	+		MMJJ_RS08345	0.48	+0.6
1,538,256	-		MMJJ_RS08345	0.50	+0.4
1,538,256	-		MMJJ_RS08345	0.50	-0.3
1,538,273	+		MMJJ_RS08345	0.53	+0.5
1,538,295	-		MMJJ_RS08345	0.57	-0.2
1,538,298	+		MMJJ_RS08345	0.57	+0.0
1,538,298	+		MMJJ_RS08345	0.57	+0.8
1,538,298	+		MMJJ_RS08345	0.57	+0.1
1,538,298	+		MMJJ_RS08345	0.57	+0.8
1,538,316	-		MMJJ_RS08345	0.60	-1.1
1,538,317	+		MMJJ_RS08345	0.61	-0.7
1,538,345	-		MMJJ_RS08345	0.65	+0.3
1,538,346	+		MMJJ_RS08345	0.65	-0.2
1,538,359	+		MMJJ_RS08345	0.68	-0.0
1,538,361	-		MMJJ_RS08345	0.68	+0.9
1,538,362	+		MMJJ_RS08345	0.68	+0.8
1,538,362	+		MMJJ_RS08345	0.68	+0.0
1,538,362	+		MMJJ_RS08345	0.68	+1.6
1,538,362	+		MMJJ_RS08345	0.68	-0.1
1,538,362	+		MMJJ_RS08345	0.68	+0.2
1,538,362	+		MMJJ_RS08345	0.68	-0.2
1,538,367	-		MMJJ_RS08345	0.69	+0.2
1,538,385	-		MMJJ_RS08345	0.72	+1.9
1,538,385	-		MMJJ_RS08345	0.72	+0.5
1,538,385	-		MMJJ_RS08345	0.72	-1.3
1,538,386	+		MMJJ_RS08345	0.72	+0.2
1,538,391	-		MMJJ_RS08345	0.73	+0.3
1,538,400	+		MMJJ_RS08345	0.75	+0.6
1,538,410	-		MMJJ_RS08345	0.76	+1.3
1,538,410	-		MMJJ_RS08345	0.76	+0.3
1,538,410	-		MMJJ_RS08345	0.76	+0.1
1,538,411	+		MMJJ_RS08345	0.76	-0.5
1,538,445	-		MMJJ_RS08345	0.82	-0.5
1,538,445	-		MMJJ_RS08345	0.82	+0.3
1,538,447	-		MMJJ_RS08345	0.82	+0.0
1,538,448	+		MMJJ_RS08345	0.83	+0.2
1,538,448	+		MMJJ_RS08345	0.83	+0.5
1,538,448	+		MMJJ_RS08345	0.83	-0.4
1,538,452	+		MMJJ_RS08345	0.83	+0.8
1,538,489	-		MMJJ_RS08345	0.90	-0.3
1,538,561	+				-1.6
1,538,584	-				+0.2
1,538,584	-				+0.2
1,538,585	+				-0.0
1,538,586	-				+0.7
1,538,586	-				+0.5
1,538,586	-				+0.3
1,538,586	-				-0.3
1,538,586	-				-0.9
1,538,587	+				-0.4
1,538,591	+				-0.0
1,538,591	+				+0.0
1,538,591	+				+0.1
1,538,593	+				-0.3
1,538,593	+				+0.4
1,538,611	+				+0.1
1,538,627	+				-0.1
1,538,629	+				+0.3
1,538,629	+				-0.0
1,538,630	-				-0.2
1,538,696	-				+0.0
1,538,696	-				-0.1
1,538,696	-				-0.0
1,538,696	-				+0.6
1,538,697	+				+0.1
1,538,697	+				-0.4
1,538,700	-				+1.4
1,538,700	-				+0.8
1,538,700	-				+0.5
1,538,700	-				+1.5
1,538,701	+				+0.5
1,538,711	+				-0.6
1,538,714	+				-0.0
1,538,714	+				-0.2
1,538,817	+				+0.5
1,538,818	-				+2.6
1,538,818	-				+0.1
1,538,819	+				+2.3
1,538,861	-				-0.2
1,538,892	-				+1.1
1,538,939	+		MMJJ_RS08350	0.10	+0.6
1,538,939	+		MMJJ_RS08350	0.10	+2.0
1,538,939	+		MMJJ_RS08350	0.10	-0.7
1,538,959	+		MMJJ_RS08350	0.11	-0.3
1,538,959	+		MMJJ_RS08350	0.11	+0.3
1,539,049	+		MMJJ_RS08350	0.16	-0.0
1,539,049	+		MMJJ_RS08350	0.16	+0.5
1,539,049	+		MMJJ_RS08350	0.16	+1.8
1,539,073	-		MMJJ_RS08350	0.17	+0.1
1,539,127	+		MMJJ_RS08350	0.19	-0.1
1,539,141	-		MMJJ_RS08350	0.20	+0.6
1,539,142	+		MMJJ_RS08350	0.20	+0.4
1,539,158	-		MMJJ_RS08350	0.21	+3.0
1,539,159	+		MMJJ_RS08350	0.21	+0.7
1,539,177	-		MMJJ_RS08350	0.21	-0.3
1,539,177	-		MMJJ_RS08350	0.21	+0.5
1,539,214	-		MMJJ_RS08350	0.23	+0.8
1,539,215	+		MMJJ_RS08350	0.23	-0.5
1,539,215	+		MMJJ_RS08350	0.23	+0.4
1,539,215	+		MMJJ_RS08350	0.23	-0.4
1,539,215	+		MMJJ_RS08350	0.23	+0.3
1,539,222	-		MMJJ_RS08350	0.23	-0.7
1,539,222	-		MMJJ_RS08350	0.23	-0.9
1,539,271	+		MMJJ_RS08350	0.26	+0.1
1,539,314	-		MMJJ_RS08350	0.28	+0.4
1,539,324	-		MMJJ_RS08350	0.28	+0.1
1,539,324	-		MMJJ_RS08350	0.28	+0.4
1,539,349	+		MMJJ_RS08350	0.29	-0.4
1,539,366	+		MMJJ_RS08350	0.30	-0.1
1,539,371	+		MMJJ_RS08350	0.30	+0.6
1,539,371	+		MMJJ_RS08350	0.30	+0.6
1,539,389	-		MMJJ_RS08350	0.31	-0.2
1,539,389	-		MMJJ_RS08350	0.31	+2.9
1,539,441	-		MMJJ_RS08350	0.34	-0.3
1,539,445	+		MMJJ_RS08350	0.34	+1.6
1,539,503	-		MMJJ_RS08350	0.36	+0.1
1,539,524	-		MMJJ_RS08350	0.37	-0.1
1,539,541	+		MMJJ_RS08350	0.38	-0.6
1,539,541	+		MMJJ_RS08350	0.38	+0.1
1,539,580	+		MMJJ_RS08350	0.40	+0.6
1,539,580	+		MMJJ_RS08350	0.40	+0.3
1,539,582	-		MMJJ_RS08350	0.40	-0.0
1,539,602	+		MMJJ_RS08350	0.41	+0.1
1,539,641	-		MMJJ_RS08350	0.43	+1.6
1,539,642	+		MMJJ_RS08350	0.43	-1.0
1,539,657	+		MMJJ_RS08350	0.44	+0.4
1,539,696	-		MMJJ_RS08350	0.45	-0.3
1,539,711	+		MMJJ_RS08350	0.46	+0.5
1,539,720	+		MMJJ_RS08350	0.46	-0.5
1,539,798	-		MMJJ_RS08350	0.50	+0.1
1,539,813	+		MMJJ_RS08350	0.51	+0.1
1,539,813	+		MMJJ_RS08350	0.51	-0.2
1,539,870	+		MMJJ_RS08350	0.53	+2.6
1,539,870	+		MMJJ_RS08350	0.53	-0.3
1,539,870	+		MMJJ_RS08350	0.53	+0.1
1,539,894	-		MMJJ_RS08350	0.54	+0.1
1,539,973	+		MMJJ_RS08350	0.58	-1.0
1,539,990	+		MMJJ_RS08350	0.59	+0.1
1,540,174	+		MMJJ_RS08350	0.67	+0.4
1,540,252	+		MMJJ_RS08350	0.71	+0.2
1,540,311	-		MMJJ_RS08350	0.74	+0.1
1,540,311	-		MMJJ_RS08350	0.74	-0.3
1,540,311	-		MMJJ_RS08350	0.74	-1.3
1,540,311	-		MMJJ_RS08350	0.74	+2.3
1,540,312	+		MMJJ_RS08350	0.74	+3.2
1,540,312	+		MMJJ_RS08350	0.74	+0.1
1,540,312	+		MMJJ_RS08350	0.74	+0.3
1,540,312	+		MMJJ_RS08350	0.74	-0.1
1,540,312	+		MMJJ_RS08350	0.74	+0.4
1,540,312	+		MMJJ_RS08350	0.74	+0.1
1,540,312	+		MMJJ_RS08350	0.74	+2.3
1,540,315	-		MMJJ_RS08350	0.74	+0.2
1,540,316	+		MMJJ_RS08350	0.74	+0.5
1,540,320	+		MMJJ_RS08350	0.74	+0.6
1,540,347	-		MMJJ_RS08350	0.75	+2.5
1,540,355	-		MMJJ_RS08350	0.76	-0.4
1,540,356	+		MMJJ_RS08350	0.76	+0.3
1,540,368	+		MMJJ_RS08350	0.76	-0.0
1,540,368	+		MMJJ_RS08350	0.76	-0.3
1,540,412	-		MMJJ_RS08350	0.78	+0.3
1,540,412	-		MMJJ_RS08350	0.78	-2.0
1,540,412	-		MMJJ_RS08350	0.78	-0.1
1,540,413	+		MMJJ_RS08350	0.78	+0.4
1,540,413	+		MMJJ_RS08350	0.78	+2.2
1,540,413	+		MMJJ_RS08350	0.78	+0.0
1,540,413	+		MMJJ_RS08350	0.78	-0.2
1,540,414	-		MMJJ_RS08350	0.78	+0.9
1,540,414	-		MMJJ_RS08350	0.78	+0.7
1,540,414	-		MMJJ_RS08350	0.78	+1.7
1,540,414	-		MMJJ_RS08350	0.78	-0.1
1,540,414	-		MMJJ_RS08350	0.78	-0.1
1,540,414	-		MMJJ_RS08350	0.78	-0.3
1,540,414	-		MMJJ_RS08350	0.78	+0.9
1,540,415	+		MMJJ_RS08350	0.78	+1.6
1,540,415	+		MMJJ_RS08350	0.78	+1.2
1,540,415	+		MMJJ_RS08350	0.78	+0.7
1,540,415	+		MMJJ_RS08350	0.78	-0.9
1,540,415	+		MMJJ_RS08350	0.78	+0.2
1,540,415	+		MMJJ_RS08350	0.78	+1.2
1,540,415	+		MMJJ_RS08350	0.78	-0.7
1,540,415	+		MMJJ_RS08350	0.78	+1.0
1,540,415	+		MMJJ_RS08350	0.78	+0.6
1,540,415	+		MMJJ_RS08350	0.78	+0.3
1,540,415	+		MMJJ_RS08350	0.78	+2.3
1,540,415	+		MMJJ_RS08350	0.78	+0.9
1,540,438	-		MMJJ_RS08350	0.79	-0.1
1,540,442	-		MMJJ_RS08350	0.80	-0.3
1,540,443	+		MMJJ_RS08350	0.80	-0.3
1,540,443	+		MMJJ_RS08350	0.80	+1.3
1,540,443	+		MMJJ_RS08350	0.80	+0.3
1,540,510	-		MMJJ_RS08350	0.83	+0.2
1,540,511	+		MMJJ_RS08350	0.83	-1.1
1,540,554	+		MMJJ_RS08350	0.85	-0.2
1,540,570	-		MMJJ_RS08350	0.86	+0.4
1,540,570	-		MMJJ_RS08350	0.86	-0.2
1,540,571	+		MMJJ_RS08350	0.86	+0.8
1,540,571	+		MMJJ_RS08350	0.86	+0.3
1,540,574	-		MMJJ_RS08350	0.86	+1.5
1,540,574	-		MMJJ_RS08350	0.86	+0.4
1,540,574	-		MMJJ_RS08350	0.86	-0.1
1,540,574	-		MMJJ_RS08350	0.86	+0.1
1,540,575	+		MMJJ_RS08350	0.86	-0.3
1,540,575	+		MMJJ_RS08350	0.86	+0.2
1,540,589	-		MMJJ_RS08350	0.86	+0.3
1,540,589	-		MMJJ_RS08350	0.86	-0.4
1,540,590	+		MMJJ_RS08350	0.86	-0.6
1,540,657	+		MMJJ_RS08350	0.90	+0.3
1,540,699	+				+0.4
1,540,713	-				+1.6
1,540,757	-				-0.8
1,540,776	-				-0.6
1,540,788	-				+2.8
1,540,788	-				-1.2
1,540,788	-				-0.1
1,540,788	-				-1.1
1,540,789	+				+0.2
1,540,790	-				+0.2
1,540,790	-				-0.0
1,540,790	-				+0.0
1,540,791	+				+0.4
1,540,791	+				+0.3
1,540,811	-				+0.6
1,540,875	-				-0.0
1,540,883	-				-0.2
1,540,926	-		MMJJ_RS09370	0.12	+0.4
1,540,927	+		MMJJ_RS09370	0.13	-0.1
1,540,927	+		MMJJ_RS09370	0.13	+0.2
1,540,988	-		MMJJ_RS09370	0.41	-0.4
1,541,142	-				+0.1
1,541,143	+				+0.7
1,541,143	+				+0.1
1,541,147	+				-0.3
1,541,147	+				+1.4
1,541,147	+				-0.1
1,541,147	+				+4.5
1,541,148	-				-0.1
1,541,165	-				+0.1
1,541,168	+				+0.3
1,541,170	+				+0.1
1,541,182	-				-0.0
1,541,182	-				+0.3
1,541,183	+				+0.0
1,541,184	-				-0.0
1,541,185	+				+0.1
1,541,185	+				-0.4
1,541,185	+				+0.1
1,541,185	+				-0.2
1,541,193	-				-0.1
1,541,193	-				+0.9
1,541,194	+				+0.0
1,541,245	-				+1.9
1,541,246	+				-0.2
1,541,255	-				+1.1
1,541,256	+				+0.1
1,541,259	+				+0.1
1,541,302	+		MMJJ_RS08355	0.18	+0.2
1,541,348	-		MMJJ_RS08355	0.33	+0.2
1,541,355	-		MMJJ_RS08355	0.35	-0.1
1,541,356	+		MMJJ_RS08355	0.36	-0.0
1,541,406	+		MMJJ_RS08355	0.51	+0.7
1,541,454	-		MMJJ_RS08355	0.67	+0.7
1,541,492	+		MMJJ_RS08355	0.79	+0.4
1,541,496	-		MMJJ_RS08355	0.80	+0.1
1,541,496	-		MMJJ_RS08355	0.80	+0.1
1,541,496	-		MMJJ_RS08355	0.80	+0.1
1,541,496	-		MMJJ_RS08355	0.80	-0.1
1,541,496	-		MMJJ_RS08355	0.80	-0.3
1,541,496	-		MMJJ_RS08355	0.80	-0.3
1,541,496	-		MMJJ_RS08355	0.80	+0.0
1,541,497	+		MMJJ_RS08355	0.80	+0.1
1,541,497	+		MMJJ_RS08355	0.80	+1.6
1,541,497	+		MMJJ_RS08355	0.80	-0.4
1,541,497	+		MMJJ_RS08355	0.80	+0.3
1,541,497	+		MMJJ_RS08355	0.80	+0.0
1,541,534	-				+0.8
1,541,535	+				+1.6
1,541,535	+				+0.8
1,541,535	+				-0.1
1,541,537	+				+0.7
1,541,537	+				-0.5
1,541,561	-				-0.1
1,541,562	+				+0.7
1,541,562	+				-0.2
1,541,575	-				+0.2
1,541,581	-				-0.8
1,541,585	+				+0.6
1,541,625	+				+0.1
1,541,651	-				+0.1
1,541,659	+				-0.8
1,541,688	-				+1.9
1,541,691	-				-0.3
1,541,692	+				+0.2
1,541,692	+				+1.5
1,541,702	-		MMJJ_RS08360	0.10	+0.6
1,541,708	-		MMJJ_RS08360	0.11	-0.3
1,541,709	+		MMJJ_RS08360	0.11	+0.1
1,541,720	-		MMJJ_RS08360	0.12	-0.0
1,541,721	+		MMJJ_RS08360	0.12	+0.1
1,541,740	-		MMJJ_RS08360	0.13	-1.7
1,541,819	+		MMJJ_RS08360	0.20	-0.2
1,541,825	-		MMJJ_RS08360	0.21	-0.6
1,541,826	+		MMJJ_RS08360	0.21	+0.2
1,541,832	+		MMJJ_RS08360	0.21	-0.3
1,541,857	-		MMJJ_RS08360	0.24	-0.2
1,541,858	+		MMJJ_RS08360	0.24	+0.0
1,541,883	-		MMJJ_RS08360	0.26	+0.3