Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07700

Experiment: Formate pooled triplicate planktonic cells

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate pooled triplicate planktonic cells
1,412,177	-		MMJJ_RS07695	0.55	+0.8
1,412,212	-		MMJJ_RS07695	0.57	+0.3
1,412,319	-		MMJJ_RS07695	0.63	+0.2
1,412,319	-		MMJJ_RS07695	0.63	+0.4
1,412,319	-		MMJJ_RS07695	0.63	+1.0
1,412,319	-		MMJJ_RS07695	0.63	+0.3
1,412,323	-		MMJJ_RS07695	0.63	+0.5
1,412,323	-		MMJJ_RS07695	0.63	+1.3
1,412,323	-		MMJJ_RS07695	0.63	+0.9
1,412,323	-		MMJJ_RS07695	0.63	+0.5
1,412,391	-		MMJJ_RS07695	0.67	+0.1
1,412,391	-		MMJJ_RS07695	0.67	-0.1
1,412,391	-		MMJJ_RS07695	0.67	+0.8
1,412,391	-		MMJJ_RS07695	0.67	-0.2
1,412,391	-		MMJJ_RS07695	0.67	+0.4
1,412,392	+		MMJJ_RS07695	0.67	-0.0
1,412,409	-		MMJJ_RS07695	0.68	+0.4
1,412,409	-		MMJJ_RS07695	0.68	-0.3
1,412,526	-		MMJJ_RS07695	0.74	+0.6
1,412,526	-		MMJJ_RS07695	0.74	+0.1
1,412,591	-		MMJJ_RS07695	0.77	+1.2
1,412,591	-		MMJJ_RS07695	0.77	+0.1
1,412,592	+		MMJJ_RS07695	0.77	+0.2
1,412,593	-		MMJJ_RS07695	0.78	+1.2
1,412,593	-		MMJJ_RS07695	0.78	-0.0
1,412,593	-		MMJJ_RS07695	0.78	-0.2
1,412,594	+		MMJJ_RS07695	0.78	-0.3
1,412,624	+		MMJJ_RS07695	0.79	-1.1
1,412,747	+		MMJJ_RS07695	0.86	-0.4
1,412,783	-		MMJJ_RS07695	0.88	+0.2
1,412,783	-		MMJJ_RS07695	0.88	+0.1
1,412,785	-		MMJJ_RS07695	0.88	+2.8
1,412,785	-		MMJJ_RS07695	0.88	-0.2
1,412,785	-		MMJJ_RS07695	0.88	+0.6
1,412,786	+		MMJJ_RS07695	0.88	-0.5
1,412,788	+		MMJJ_RS07695	0.88	-0.1
1,412,788	+		MMJJ_RS07695	0.88	+0.8
1,412,869	-				-0.2
1,412,873	-				+0.9
1,412,873	-				+1.2
1,412,873	-				+0.4
1,412,873	-				+3.1
1,412,874	+				+0.0
1,412,874	+				+0.8
1,412,874	+				+0.3
1,412,874	+				+0.9
1,412,878	+				+0.0
1,412,880	+				+2.7
1,412,969	-				+0.2
1,412,969	-				+0.0
1,412,970	+				+0.9
1,412,970	+				+1.0
1,412,970	+				+0.7
1,413,002	+				-0.5
1,413,010	+				+0.4
1,413,014	-				-0.4
1,413,021	-				+0.0
1,413,021	-				+0.4
1,413,021	-				+0.0
1,413,021	-				+0.1
1,413,021	-				-0.5
1,413,021	-				+0.8
1,413,021	-				+0.2
1,413,021	-				-0.0
1,413,021	-				+0.1
1,413,022	+				+0.1
1,413,022	+				+1.5
1,413,022	+				-0.1
1,413,022	+				-2.0
1,413,022	+				-0.1
1,413,022	+				+0.2
1,413,022	+				-0.0
1,413,022	+				-0.0
1,413,022	+				+0.2
1,413,022	+				+3.1
1,413,022	+				-1.9
1,413,024	-				+0.2
1,413,024	-				+0.4
1,413,024	-				+0.1
1,413,024	-				+0.2
1,413,024	-				-0.5
1,413,024	-				-0.1
1,413,024	-				+0.6
1,413,025	+				+0.3
1,413,025	+				+1.1
1,413,025	+				-0.9
1,413,025	+				+0.8
1,413,025	+				-0.9
1,413,025	+				+0.5
1,413,025	+				+0.7
1,413,026	-				+0.6
1,413,026	-				+0.6
1,413,026	-				+0.3
1,413,027	+				+0.6
1,413,027	+				+3.5
1,413,028	-				-0.3
1,413,028	-				+0.8
1,413,029	+				+0.1
1,413,029	+				-0.6
1,413,029	+				+0.3
1,413,031	-				+0.9
1,413,031	-				-0.3
1,413,031	-				+0.4
1,413,031	-				+0.4
1,413,031	-				+0.3
1,413,031	-				-0.1
1,413,032	+				-0.1
1,413,032	+				+0.2
1,413,032	+				-0.1
1,413,032	+				+0.6
1,413,034	-				-0.7
1,413,034	-				+0.7
1,413,034	-				+2.9
1,413,034	-				+1.9
1,413,037	-				+0.7
1,413,038	+				+0.4
1,413,044	+				-0.7
1,413,053	-				+0.5
1,413,054	+				-0.9
1,413,059	-				+0.2
1,413,074	-				-0.3
1,413,075	+				+0.7
1,413,156	+				-0.3
1,413,182	-				+0.6
1,413,183	+				-1.7
1,413,206	-		MMJJ_RS07700	0.10	+0.4
1,413,213	-		MMJJ_RS07700	0.11	-0.7
1,413,213	-		MMJJ_RS07700	0.11	-0.2
1,413,214	+		MMJJ_RS07700	0.11	+0.2
1,413,214	+		MMJJ_RS07700	0.11	-0.4
1,413,220	-		MMJJ_RS07700	0.12	+0.0
1,413,220	-		MMJJ_RS07700	0.12	+0.2
1,413,262	-		MMJJ_RS07700	0.15	+0.9
1,413,262	-		MMJJ_RS07700	0.15	+0.1
1,413,280	-		MMJJ_RS07700	0.16	+0.3
1,413,392	+		MMJJ_RS07700	0.26	+0.1
1,413,404	-		MMJJ_RS07700	0.27	+0.1
1,413,405	+		MMJJ_RS07700	0.27	-0.2
1,413,408	-		MMJJ_RS07700	0.27	+1.6
1,413,444	-		MMJJ_RS07700	0.30	+0.2
1,413,445	+		MMJJ_RS07700	0.30	-0.0
1,413,457	+		MMJJ_RS07700	0.31	+0.1
1,413,467	-		MMJJ_RS07700	0.32	+2.1
1,413,622	-		MMJJ_RS07700	0.44	-0.8
1,413,641	-		MMJJ_RS07700	0.46	+1.7
1,413,648	+		MMJJ_RS07700	0.46	-0.3
1,413,678	-		MMJJ_RS07700	0.49	+0.3
1,413,678	-		MMJJ_RS07700	0.49	+0.3
1,413,680	-		MMJJ_RS07700	0.49	-0.6
1,413,680	-		MMJJ_RS07700	0.49	+0.2
1,413,681	+		MMJJ_RS07700	0.49	-0.0
1,413,681	+		MMJJ_RS07700	0.49	+0.0
1,413,681	+		MMJJ_RS07700	0.49	+0.2
1,413,757	+		MMJJ_RS07700	0.55	+0.6
1,413,772	+		MMJJ_RS07700	0.57	+0.4
1,413,772	+		MMJJ_RS07700	0.57	+0.1
1,413,779	-		MMJJ_RS07700	0.57	+1.0
1,413,781	-		MMJJ_RS07700	0.57	-0.0
1,413,790	-		MMJJ_RS07700	0.58	+0.1
1,413,791	+				+0.1
1,413,843	+		MMJJ_RS07700	0.62	+1.3
1,413,847	-		MMJJ_RS07700	0.63	+0.1
1,413,848	+		MMJJ_RS07700	0.63	-0.4
1,413,872	+		MMJJ_RS07700	0.65	+0.4
1,413,918	-		MMJJ_RS07700	0.69	+0.1
1,414,043	-		MMJJ_RS07700	0.79	+0.2
1,414,043	-		MMJJ_RS07700	0.79	+0.6
1,414,051	-		MMJJ_RS07700	0.79	+0.6
1,414,059	-		MMJJ_RS07700	0.80	-0.3
1,414,059	-		MMJJ_RS07700	0.80	+0.1
1,414,100	-		MMJJ_RS07700	0.83	+2.9
1,414,103	-		MMJJ_RS07700	0.84	-0.1
1,414,103	-		MMJJ_RS07700	0.84	-0.0
1,414,104	+		MMJJ_RS07700	0.84	+0.6
1,414,104	+		MMJJ_RS07700	0.84	+1.5
1,414,111	+		MMJJ_RS07700	0.84	+0.2
1,414,117	-		MMJJ_RS07700	0.85	+0.4
1,414,125	-		MMJJ_RS07700	0.85	+0.3
1,414,125	-		MMJJ_RS07700	0.85	+0.2
1,414,126	+		MMJJ_RS07700	0.86	+0.6
1,414,134	-		MMJJ_RS07700	0.86	-0.5
1,414,135	+		MMJJ_RS07700	0.86	+0.3
1,414,141	+		MMJJ_RS07700	0.87	+1.0
1,414,141	+		MMJJ_RS07700	0.87	-0.0
1,414,150	-		MMJJ_RS07700	0.88	+0.8
1,414,150	-		MMJJ_RS07700	0.88	+1.9
1,414,150	-		MMJJ_RS07700	0.88	-0.2
1,414,150	-		MMJJ_RS07700	0.88	+0.1
1,414,151	+		MMJJ_RS07700	0.88	+0.9
1,414,151	+		MMJJ_RS07700	0.88	+0.0
1,414,216	-				-1.9
1,414,246	-				+1.0
1,414,247	+				+0.1
1,414,257	-				+0.8
1,414,291	-				+0.1
1,414,292	+				+1.5
1,414,292	+				-0.6
1,414,301	+				+0.1
1,414,301	+				-0.3
1,414,323	+				-2.4
1,414,349	+				-3.0
1,414,437	-		MMJJ_RS07705	0.17	-1.4
1,414,444	+		MMJJ_RS07705	0.18	-0.7
1,414,563	+		MMJJ_RS07705	0.35	-1.7
1,414,572	-		MMJJ_RS07705	0.37	-2.7
1,414,606	+		MMJJ_RS07705	0.41	-0.1
1,414,650	+		MMJJ_RS07705	0.48	-2.2
1,414,654	+		MMJJ_RS07705	0.48	-0.9
1,414,654	+		MMJJ_RS07705	0.48	-1.9
1,414,813	+		MMJJ_RS07705	0.71	-2.4
1,414,987	-				+0.0
1,414,987	-				+0.2
1,414,988	+				+0.7
1,414,988	+				+0.2