Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07685

Experiment: Formate pooled triplicate planktonic cells

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate pooled triplicate planktonic cells
1,407,195	-		MMJJ_RS07680	0.27	-0.5
1,407,195	-		MMJJ_RS07680	0.27	-0.5
1,407,200	+		MMJJ_RS07680	0.27	-0.5
1,407,240	-		MMJJ_RS07680	0.30	-1.4
1,407,242	-		MMJJ_RS07680	0.30	+0.2
1,407,243	+		MMJJ_RS07680	0.30	-0.5
1,407,243	+		MMJJ_RS07680	0.30	-1.2
1,407,251	+		MMJJ_RS07680	0.31	-1.2
1,407,251	+		MMJJ_RS07680	0.31	+0.3
1,407,251	+		MMJJ_RS07680	0.31	+0.4
1,407,374	-		MMJJ_RS07680	0.40	+0.2
1,407,375	+		MMJJ_RS07680	0.40	-2.0
1,407,411	+		MMJJ_RS07680	0.43	+0.2
1,407,414	-		MMJJ_RS07680	0.43	+0.8
1,407,414	-		MMJJ_RS07680	0.43	-0.6
1,407,414	-		MMJJ_RS07680	0.43	-0.7
1,407,459	-		MMJJ_RS07680	0.47	+1.2
1,407,517	+		MMJJ_RS07680	0.51	-1.8
1,407,520	-		MMJJ_RS07680	0.51	-1.4
1,407,520	-		MMJJ_RS07680	0.51	-0.8
1,407,521	+		MMJJ_RS07680	0.51	-1.3
1,407,521	+		MMJJ_RS07680	0.51	+0.2
1,407,521	+		MMJJ_RS07680	0.51	+0.6
1,407,528	-		MMJJ_RS07680	0.52	-0.3
1,407,529	+		MMJJ_RS07680	0.52	+0.3
1,407,560	+		MMJJ_RS07680	0.54	+1.2
1,407,581	+		MMJJ_RS07680	0.56	-1.2
1,407,751	+		MMJJ_RS07680	0.69	-0.8
1,407,754	-		MMJJ_RS07680	0.69	-0.1
1,407,755	+		MMJJ_RS07680	0.69	-1.4
1,407,798	-		MMJJ_RS07680	0.72	-0.1
1,407,799	+		MMJJ_RS07680	0.72	-0.5
1,407,831	-		MMJJ_RS07680	0.75	-0.2
1,407,833	-		MMJJ_RS07680	0.75	+0.2
1,407,834	+		MMJJ_RS07680	0.75	-0.5
1,407,837	+		MMJJ_RS07680	0.75	+0.2
1,407,919	-		MMJJ_RS07680	0.82	+0.3
1,407,930	-		MMJJ_RS07680	0.82	-0.8
1,407,930	-		MMJJ_RS07680	0.82	-0.7
1,407,931	+		MMJJ_RS07680	0.82	-0.6
1,407,936	-		MMJJ_RS07680	0.83	-0.6
1,407,936	-		MMJJ_RS07680	0.83	-0.6
1,407,982	-		MMJJ_RS07680	0.86	-0.0
1,407,983	+		MMJJ_RS07680	0.86	-1.8
1,408,072	+				-0.7
1,408,081	-				-1.2
1,408,087	-				-1.1
1,408,087	-				+1.2
1,408,088	+				-2.2
1,408,095	-				+0.2
1,408,096	+				-0.3
1,408,126	-				-0.8
1,408,126	-				-0.3
1,408,127	+				-0.4
1,408,127	+				+0.6
1,408,137	+				-0.2
1,408,137	+				-0.8
1,408,184	-				-0.4
1,408,185	+				+0.3
1,408,201	+				+0.1
1,408,201	+				+0.5
1,408,210	+				+0.4
1,408,210	+				+2.2
1,408,305	+				+0.0
1,408,305	+				-0.1
1,408,311	-				+0.3
1,408,311	-				+0.3
1,408,312	+				+0.3
1,408,312	+				+0.3
1,408,312	+				-0.2
1,408,322	+				-0.2
1,408,362	-		MMJJ_RS07685	0.11	-0.1
1,408,367	-		MMJJ_RS07685	0.11	+0.8
1,408,368	+		MMJJ_RS07685	0.11	-0.1
1,408,432	-		MMJJ_RS07685	0.15	+0.4
1,408,441	+		MMJJ_RS07685	0.16	-0.1
1,408,450	+		MMJJ_RS07685	0.16	-0.6
1,408,476	+		MMJJ_RS07685	0.18	+0.2
1,408,520	-		MMJJ_RS07685	0.21	-0.3
1,408,543	-		MMJJ_RS07685	0.22	+0.5
1,408,570	+		MMJJ_RS07685	0.24	+1.7
1,408,644	-		MMJJ_RS07685	0.29	+0.2
1,408,644	-		MMJJ_RS07685	0.29	+0.3
1,408,649	+		MMJJ_RS07685	0.29	+0.3
1,408,649	+		MMJJ_RS07685	0.29	-0.1
1,408,659	+		MMJJ_RS07685	0.30	+1.8
1,408,680	+		MMJJ_RS07685	0.31	+0.5
1,408,680	+		MMJJ_RS07685	0.31	+0.5
1,408,701	-		MMJJ_RS07685	0.32	-0.3
1,408,775	+		MMJJ_RS07685	0.37	+0.5
1,408,787	-		MMJJ_RS07685	0.38	+2.8
1,408,883	+		MMJJ_RS07685	0.44	+0.4
1,408,893	+		MMJJ_RS07685	0.45	+0.5
1,408,916	+		MMJJ_RS07685	0.46	+0.5
1,408,972	-		MMJJ_RS07685	0.50	-0.6
1,408,973	+		MMJJ_RS07685	0.50	-0.0
1,408,992	+		MMJJ_RS07685	0.51	+0.8
1,409,029	+		MMJJ_RS07685	0.53	+0.2
1,409,040	-		MMJJ_RS07685	0.54	-0.6
1,409,040	-		MMJJ_RS07685	0.54	+1.8
1,409,040	-		MMJJ_RS07685	0.54	-0.8
1,409,041	+		MMJJ_RS07685	0.54	+0.6
1,409,041	+		MMJJ_RS07685	0.54	+0.6
1,409,041	+		MMJJ_RS07685	0.54	+0.5
1,409,046	-		MMJJ_RS07685	0.54	+0.6
1,409,046	-		MMJJ_RS07685	0.54	+0.2
1,409,061	+		MMJJ_RS07685	0.55	-0.1
1,409,061	+		MMJJ_RS07685	0.55	+0.6
1,409,139	+		MMJJ_RS07685	0.60	-0.1
1,409,162	+		MMJJ_RS07685	0.62	+0.4
1,409,162	+		MMJJ_RS07685	0.62	+0.4
1,409,165	-		MMJJ_RS07685	0.62	+1.4
1,409,166	+		MMJJ_RS07685	0.62	+0.1
1,409,216	-		MMJJ_RS07685	0.65	+0.5
1,409,216	-		MMJJ_RS07685	0.65	-0.2
1,409,217	+		MMJJ_RS07685	0.65	+0.4
1,409,217	+		MMJJ_RS07685	0.65	+0.1
1,409,222	+		MMJJ_RS07685	0.66	-0.0
1,409,222	+		MMJJ_RS07685	0.66	-0.2
1,409,225	+		MMJJ_RS07685	0.66	+0.3
1,409,225	+		MMJJ_RS07685	0.66	+4.0
1,409,267	-		MMJJ_RS07685	0.68	+1.6
1,409,280	-		MMJJ_RS07685	0.69	-1.2
1,409,281	+		MMJJ_RS07685	0.69	+1.3
1,409,299	-		MMJJ_RS07685	0.70	+0.6
1,409,311	-		MMJJ_RS07685	0.71	+0.6
1,409,311	-		MMJJ_RS07685	0.71	+0.3
1,409,315	-		MMJJ_RS07685	0.72	+0.6
1,409,315	-		MMJJ_RS07685	0.72	+0.4
1,409,316	+		MMJJ_RS07685	0.72	-0.0
1,409,316	+		MMJJ_RS07685	0.72	-0.4
1,409,320	-		MMJJ_RS07685	0.72	+0.4
1,409,320	-		MMJJ_RS07685	0.72	+0.3
1,409,320	-		MMJJ_RS07685	0.72	-0.1
1,409,413	-		MMJJ_RS07685	0.78	-0.7
1,409,429	-		MMJJ_RS07685	0.79	+0.4
1,409,429	-		MMJJ_RS07685	0.79	+0.4
1,409,429	-		MMJJ_RS07685	0.79	+0.9
1,409,430	+		MMJJ_RS07685	0.79	+0.4
1,409,435	-		MMJJ_RS07685	0.79	-0.2
1,409,436	+		MMJJ_RS07685	0.79	+0.7
1,409,436	+		MMJJ_RS07685	0.79	+0.3
1,409,460	+		MMJJ_RS07685	0.81	+1.8
1,409,486	-		MMJJ_RS07685	0.82	+0.2
1,409,501	+		MMJJ_RS07685	0.83	+0.5
1,409,501	+		MMJJ_RS07685	0.83	+0.3
1,409,543	-		MMJJ_RS07685	0.86	+0.4
1,409,544	+		MMJJ_RS07685	0.86	-0.8
1,409,544	+		MMJJ_RS07685	0.86	+0.3
1,409,575	+		MMJJ_RS07685	0.88	+0.2
1,409,579	-		MMJJ_RS07685	0.88	+0.3
1,409,595	+		MMJJ_RS07685	0.89	-1.8
1,409,637	-				+1.1
1,409,637	-				+0.2
1,409,637	-				+0.6
1,409,637	-				+0.7
1,409,637	-				+0.2
1,409,637	-				+0.5
1,409,638	+				-0.5
1,409,638	+				-0.3
1,409,638	+				+0.2
1,409,638	+				-0.0
1,409,638	+				+0.1
1,409,638	+				+0.9
1,409,642	-				+0.0
1,409,642	-				-0.0
1,409,642	-				+0.4
1,409,643	+				+0.8
1,409,643	+				+0.4
1,409,643	+				-0.5
1,409,645	-				+0.0
1,409,645	-				+0.8
1,409,645	-				+0.8
1,409,645	-				+0.9
1,409,645	-				+0.1
1,409,645	-				+0.6
1,409,645	-				-0.2
1,409,646	+				+2.7
1,409,646	+				+0.2
1,409,646	+				+0.2
1,409,646	+				+0.6
1,409,646	+				+0.4
1,409,649	-				+0.3
1,409,649	-				+0.4
1,409,649	-				+0.8
1,409,650	+				+0.3
1,409,650	+				-0.9
1,409,650	+				+0.5
1,409,650	+				+1.7
1,409,650	+				+0.5
1,409,650	+				+1.4
1,409,650	+				+2.7
1,409,651	-				+1.8
1,409,651	-				+1.2
1,409,651	-				+0.3
1,409,651	-				+0.2
1,409,651	-				+0.2
1,409,651	-				+1.9
1,409,651	-				+0.1
1,409,651	-				+0.6
1,409,651	-				+2.3
1,409,651	-				+1.0
1,409,651	-				+0.6
1,409,651	-				-0.3
1,409,651	-				+0.3
1,409,652	+				+0.3
1,409,652	+				-0.1
1,409,652	+				-2.4
1,409,652	+				+0.5
1,409,652	+				-0.2
1,409,652	+				+1.8
1,409,652	+				-0.2
1,409,652	+				+0.3
1,409,693	-				+0.1
1,409,699	+				+0.4
1,409,750	+				+0.1
1,409,750	+				+0.7
1,409,754	+				+0.0
1,409,754	+				+0.1
1,409,768	+				+0.2
1,409,781	-				+0.2
1,409,781	-				+2.8
1,409,781	-				+0.2
1,409,782	+				-1.8
1,409,782	+				+0.3
1,409,790	+				+0.6
1,409,790	+				+0.4
1,409,795	-				+0.2
1,409,797	-				+1.2
1,409,797	-				+0.4
1,409,811	-				+0.7
1,409,811	-				+0.3
1,409,811	-				-2.2
1,409,811	-				-0.0
1,409,812	+				+0.3
1,409,813	-				-0.1
1,409,813	-				+0.3
1,409,814	+				-0.0
1,409,814	+				-0.4
1,409,814	+				-0.2
1,409,814	+				+1.0
1,409,819	-				+0.1
1,409,819	-				+0.2
1,409,829	-				+1.8
1,409,829	-				+0.2
1,409,830	+				-0.0
1,409,830	+				+0.7
1,409,830	+				-0.3
1,409,830	+				-0.4
1,409,830	+				-0.1
1,409,831	-				+0.2
1,409,831	-				-0.1
1,409,831	-				+0.7
1,409,834	-				-0.5
1,409,835	+				+0.6
1,409,842	+				-0.3
1,409,858	-				+0.1
1,409,884	+				-0.2
1,409,925	+				+0.8
1,409,932	+				-1.2
1,410,017	-		MMJJ_RS07690	0.13	+0.9
1,410,027	+		MMJJ_RS07690	0.14	+2.1
1,410,027	+		MMJJ_RS07690	0.14	+0.3
1,410,061	+		MMJJ_RS07690	0.17	-0.1
1,410,084	-		MMJJ_RS07690	0.19	-0.1
1,410,119	-		MMJJ_RS07690	0.22	+0.7
1,410,119	-		MMJJ_RS07690	0.22	+1.1
1,410,120	+		MMJJ_RS07690	0.22	+0.2
1,410,134	+		MMJJ_RS07690	0.23	+0.1
1,410,140	-		MMJJ_RS07690	0.23	+0.2
1,410,140	-		MMJJ_RS07690	0.23	-0.2
1,410,141	+		MMJJ_RS07690	0.23	-0.3
1,410,141	+		MMJJ_RS07690	0.23	+1.6
1,410,144	+		MMJJ_RS07690	0.24	+0.4
1,410,144	+		MMJJ_RS07690	0.24	+0.2
1,410,144	+		MMJJ_RS07690	0.24	+0.2
1,410,144	+		MMJJ_RS07690	0.24	+0.2
1,410,183	-		MMJJ_RS07690	0.27	-0.2
1,410,184	+		MMJJ_RS07690	0.27	+0.3
1,410,184	+		MMJJ_RS07690	0.27	+0.9
1,410,185	-		MMJJ_RS07690	0.27	+0.1
1,410,209	+		MMJJ_RS07690	0.29	+2.4
1,410,209	+		MMJJ_RS07690	0.29	+0.5
1,410,228	-		MMJJ_RS07690	0.31	-0.8
1,410,320	-				-0.8
1,410,343	+		MMJJ_RS07690	0.41	+1.2
1,410,369	-		MMJJ_RS07690	0.43	-0.2
1,410,395	-		MMJJ_RS07690	0.45	+0.2
1,410,397	-		MMJJ_RS07690	0.45	+0.2
1,410,502	-		MMJJ_RS07690	0.54	-0.0
1,410,579	-		MMJJ_RS07690	0.61	+0.4
1,410,580	+		MMJJ_RS07690	0.61	-0.2
1,410,591	+		MMJJ_RS07690	0.62	+0.6
1,410,593	-		MMJJ_RS07690	0.62	-0.1