Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06125

Experiment: Formate pooled triplicate planktonic cells

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate pooled triplicate planktonic cells
1,136,221	+				-0.8
1,136,227	-				+0.7
1,136,231	+				-0.3
1,136,234	-				-0.3
1,136,234	-				-0.1
1,136,234	-				-0.4
1,136,235	+				-0.9
1,136,235	+				+0.5
1,136,235	+				-0.3
1,136,235	+				+0.4
1,136,235	+				+0.4
1,136,235	+				+0.1
1,136,238	-				+0.2
1,136,238	-				-0.6
1,136,238	-				+0.5
1,136,238	-				+0.5
1,136,238	-				-1.5
1,136,238	-				+0.2
1,136,238	-				+0.0
1,136,239	+				-0.2
1,136,239	+				-2.2
1,136,239	+				+0.4
1,136,239	+				+0.1
1,136,239	+				-0.3
1,136,239	+				+0.3
1,136,259	+				+0.3
1,136,259	+				+0.4
1,136,266	-				-0.1
1,136,266	-				+0.7
1,136,266	-				+0.5
1,136,270	-				+0.5
1,136,270	-				+0.3
1,136,270	-				+0.0
1,136,270	-				+0.3
1,136,270	-				+0.0
1,136,270	-				+1.4
1,136,270	-				-1.5
1,136,270	-				+0.2
1,136,270	-				+0.1
1,136,270	-				+1.1
1,136,271	+				+1.2
1,136,271	+				-0.9
1,136,271	+				+0.5
1,136,271	+				-0.9
1,136,271	+				-0.6
1,136,286	-				-0.4
1,136,286	-				+0.0
1,136,287	+				+0.1
1,136,287	+				+0.6
1,136,288	-				+0.4
1,136,289	+				-0.0
1,136,291	-				+0.5
1,136,291	-				-0.5
1,136,291	-				-2.7
1,136,292	+				+0.7
1,136,329	-				-0.0
1,136,329	-				+0.3
1,136,330	+				-0.4
1,136,375	-				-1.5
1,136,399	-				+0.0
1,136,418	+		MMJJ_RS06120	0.12	-1.2
1,136,436	+		MMJJ_RS06120	0.14	-0.5
1,136,526	+		MMJJ_RS06120	0.24	-0.1
1,136,572	-		MMJJ_RS06120	0.30	-0.1
1,136,573	+		MMJJ_RS06120	0.30	+0.1
1,136,573	+		MMJJ_RS06120	0.30	+0.7
1,136,574	-		MMJJ_RS06120	0.30	+0.6
1,136,574	-		MMJJ_RS06120	0.30	+2.7
1,136,693	-		MMJJ_RS06120	0.44	+2.7
1,136,693	-		MMJJ_RS06120	0.44	-0.1
1,136,694	+		MMJJ_RS06120	0.44	+0.1
1,136,694	+		MMJJ_RS06120	0.44	+0.2
1,136,706	+		MMJJ_RS06120	0.45	+0.4
1,136,713	+		MMJJ_RS06120	0.46	+0.1
1,136,714	-		MMJJ_RS06120	0.46	+2.7
1,136,715	+		MMJJ_RS06120	0.46	+0.4
1,136,715	+		MMJJ_RS06120	0.46	+0.5
1,136,736	+		MMJJ_RS06120	0.49	+0.3
1,136,736	+		MMJJ_RS06120	0.49	-1.3
1,136,747	-		MMJJ_RS06120	0.50	-0.7
1,136,747	-		MMJJ_RS06120	0.50	+0.3
1,136,783	-		MMJJ_RS06120	0.54	+0.6
1,136,858	-		MMJJ_RS06120	0.63	-0.5
1,136,900	-		MMJJ_RS06120	0.67	-1.2
1,136,913	+		MMJJ_RS06120	0.69	+1.5
1,136,923	-		MMJJ_RS06120	0.70	+1.9
1,136,924	+		MMJJ_RS06120	0.70	+0.4
1,136,924	+		MMJJ_RS06120	0.70	+3.8
1,136,924	+		MMJJ_RS06120	0.70	+0.4
1,136,925	-		MMJJ_RS06120	0.70	+0.4
1,136,925	-		MMJJ_RS06120	0.70	+0.4
1,136,925	-		MMJJ_RS06120	0.70	+0.1
1,136,925	-		MMJJ_RS06120	0.70	+1.1
1,136,928	+		MMJJ_RS06120	0.71	+0.5
1,136,928	+		MMJJ_RS06120	0.71	-0.2
1,136,928	+		MMJJ_RS06120	0.71	+0.6
1,136,934	+		MMJJ_RS06120	0.71	+0.3
1,136,982	-		MMJJ_RS06120	0.77	+0.3
1,136,988	+		MMJJ_RS06120	0.77	-0.4
1,136,990	-		MMJJ_RS06120	0.78	+0.1
1,136,990	-		MMJJ_RS06120	0.78	-0.2
1,137,006	+		MMJJ_RS06120	0.80	-0.0
1,137,125	+				+0.6
1,137,128	-				+2.2
1,137,128	-				+0.1
1,137,185	-				+0.1
1,137,197	-				-0.5
1,137,270	-				-0.3
1,137,270	-				+0.5
1,137,270	-				-1.0
1,137,270	-				+0.5
1,137,271	+				+0.1
1,137,271	+				-0.7
1,137,333	+		MMJJ_RS06125	0.11	-0.6
1,137,335	+		MMJJ_RS06125	0.11	-0.1
1,137,335	+		MMJJ_RS06125	0.11	+2.4
1,137,361	-		MMJJ_RS06125	0.13	-0.3
1,137,361	-		MMJJ_RS06125	0.13	+0.1
1,137,361	-		MMJJ_RS06125	0.13	+0.3
1,137,362	+		MMJJ_RS06125	0.13	-0.0
1,137,362	+		MMJJ_RS06125	0.13	+0.9
1,137,362	+		MMJJ_RS06125	0.13	+0.4
1,137,422	+		MMJJ_RS06125	0.18	+1.0
1,137,483	-		MMJJ_RS06125	0.24	+2.5
1,137,486	-		MMJJ_RS06125	0.24	-0.3
1,137,487	+		MMJJ_RS06125	0.24	-0.7
1,137,502	-		MMJJ_RS06125	0.25	+0.9
1,137,502	-		MMJJ_RS06125	0.25	+1.0
1,137,531	+		MMJJ_RS06125	0.28	-0.9
1,137,562	-		MMJJ_RS06125	0.30	+0.1
1,137,562	-		MMJJ_RS06125	0.30	+0.2
1,137,562	-		MMJJ_RS06125	0.30	+0.3
1,137,563	+		MMJJ_RS06125	0.30	+0.1
1,137,584	+		MMJJ_RS06125	0.32	+1.9
1,137,652	+		MMJJ_RS06125	0.38	-0.1
1,137,681	-		MMJJ_RS06125	0.41	+0.9
1,137,682	+		MMJJ_RS06125	0.41	+0.0
1,137,695	-		MMJJ_RS06125	0.42	+0.5
1,137,695	-		MMJJ_RS06125	0.42	+0.2
1,137,695	-		MMJJ_RS06125	0.42	-0.3
1,137,696	+		MMJJ_RS06125	0.42	+0.2
1,137,696	+		MMJJ_RS06125	0.42	+0.2
1,137,717	-		MMJJ_RS06125	0.44	-0.2
1,137,718	+		MMJJ_RS06125	0.44	+0.3
1,137,763	+		MMJJ_RS06125	0.48	-0.1
1,137,796	-		MMJJ_RS06125	0.50	+0.3
1,137,796	-		MMJJ_RS06125	0.50	-0.3
1,137,802	-		MMJJ_RS06125	0.51	-0.2
1,137,816	-		MMJJ_RS06125	0.52	-0.6
1,137,817	+		MMJJ_RS06125	0.52	+0.2
1,137,817	+		MMJJ_RS06125	0.52	+0.4
1,137,819	-		MMJJ_RS06125	0.52	+0.5
1,137,822	+		MMJJ_RS06125	0.53	+0.2
1,137,822	+		MMJJ_RS06125	0.53	+1.6
1,137,857	+		MMJJ_RS06125	0.56	-0.4
1,137,913	-		MMJJ_RS06125	0.60	+0.5
1,137,918	-		MMJJ_RS06125	0.61	+0.5
1,137,919	+		MMJJ_RS06125	0.61	+0.7
1,137,975	-		MMJJ_RS06125	0.66	-0.1
1,137,981	-		MMJJ_RS06125	0.66	-0.0
1,137,982	+		MMJJ_RS06125	0.66	+0.0
1,138,048	-		MMJJ_RS06125	0.72	+0.3
1,138,075	-		MMJJ_RS06125	0.74	-0.4
1,138,076	+		MMJJ_RS06125	0.74	-0.8
1,138,076	+		MMJJ_RS06125	0.74	+1.8
1,138,087	-		MMJJ_RS06125	0.75	+1.5
1,138,146	-		MMJJ_RS06125	0.80	+0.3
1,138,147	+		MMJJ_RS06125	0.80	+1.4
1,138,147	+		MMJJ_RS06125	0.80	-1.1
1,138,196	+		MMJJ_RS06125	0.85	+0.4
1,138,219	+		MMJJ_RS06125	0.87	-0.3
1,138,246	-		MMJJ_RS06125	0.89	+0.1
1,138,247	+		MMJJ_RS06125	0.89	+0.5
1,138,249	+		MMJJ_RS06125	0.89	+0.1
1,138,253	+		MMJJ_RS06125	0.90	+0.5
1,138,267	-				-0.5
1,138,323	-				+2.4
1,138,356	-				-0.0
1,138,357	+				-0.6
1,138,360	-				+0.0
1,138,374	-				-0.4
1,138,396	-				-0.1
1,138,427	+				-3.4
1,138,430	-				+0.9
1,138,430	-				+0.2
1,138,430	-				+0.1
1,138,431	+				-0.2
1,138,431	+				+1.0
1,138,449	-				+0.1
1,138,449	-				+0.3
1,138,450	+				-0.2
1,138,450	+				+0.8
1,138,454	-				+0.7
1,138,478	-				+0.1
1,138,483	-				+2.3
1,138,484	+				-0.9
1,138,500	-				+0.3
1,138,500	-				+0.7
1,138,501	+				-0.3
1,138,501	+				+0.7
1,138,504	-				-0.4
1,138,505	+				+0.8
1,138,505	+				+1.8
1,138,507	+				+0.3
1,138,507	+				+1.7
1,138,512	-				+0.7
1,138,512	-				+2.1
1,138,513	+				-1.3
1,138,513	+				-0.2
1,138,513	+				+0.1
1,138,514	-				+0.1
1,138,514	-				+0.1
1,138,515	+				-0.6
1,138,515	+				-0.5
1,138,515	+				+0.4
1,138,515	+				+0.5
1,138,515	+				+0.0
1,138,515	+				+0.4
1,138,516	-				+0.5
1,138,516	-				+0.0
1,138,517	+				+0.3
1,138,517	+				+0.1
1,138,517	+				+0.4
1,138,549	-				-0.6
1,138,555	+				-2.2
1,138,560	-				+0.1
1,138,596	+				+0.1
1,138,599	-				+0.1
1,138,599	-				+0.4
1,138,600	+				+0.5
1,138,600	+				+0.4
1,138,600	+				-0.1
1,138,601	-				+0.8
1,138,601	-				+0.2
1,138,602	+				+1.6
1,138,602	+				+0.4
1,138,602	-				-0.6
1,138,663	+		MMJJ_RS06130	0.15	-0.0
1,138,681	-		MMJJ_RS06130	0.23	+0.4
1,138,681	-		MMJJ_RS06130	0.23	-0.1
1,138,681	-		MMJJ_RS06130	0.23	+1.0
1,138,681	-		MMJJ_RS06130	0.23	+0.8
1,138,681	-		MMJJ_RS06130	0.23	+0.7
1,138,682	+		MMJJ_RS06130	0.24	+0.0
1,138,683	-		MMJJ_RS06130	0.24	+1.7
1,138,683	-		MMJJ_RS06130	0.24	+0.9
1,138,684	+		MMJJ_RS06130	0.25	+0.4
1,138,684	+		MMJJ_RS06130	0.25	-0.6
1,138,710	-		MMJJ_RS06130	0.36	+0.6
1,138,812	+		MMJJ_RS06130	0.81	+0.6
1,138,822	-		MMJJ_RS06130	0.85	+0.5
1,138,823	+		MMJJ_RS06130	0.86	+0.3
1,138,823	+		MMJJ_RS06130	0.86	-0.6
1,138,835	-				+0.3
1,138,838	-				+1.1
1,138,838	-				+2.9
1,138,839	+				+0.2
1,138,839	+				+0.4
1,138,920	-				+0.9
1,138,920	-				+0.7
1,138,920	-				-0.0
1,138,921	+				+0.0
1,138,921	+				+0.2
1,138,923	-				+0.7
1,138,923	-				+0.8
1,138,923	-				+0.7
1,138,923	-				+0.4
1,138,924	+				+0.2
1,138,924	+				-0.2
1,138,924	+				+1.7
1,138,925	-				-0.4
1,138,925	-				+0.3
1,138,925	-				+0.6
1,138,925	-				+0.3
1,138,925	-				+2.8
1,138,925	-				-0.3
1,138,926	+				+0.1
1,138,926	+				+0.1
1,138,926	+				-0.9
1,138,927	-				-0.2
1,138,927	-				-0.0
1,138,927	-				-0.5
1,138,927	-				+1.0
1,138,928	+				+0.6
1,138,928	+				+2.6
1,138,928	+				+0.5
1,138,928	+				+0.4
1,138,928	+				-0.2
1,138,928	+				-0.9
1,138,928	+				+0.7
1,138,928	+				+0.3
1,138,931	-				+0.3
1,138,931	-				+1.1
1,138,937	-				-0.4
1,138,938	+				+0.1
1,138,966	-				+0.3
1,138,969	-				+0.0
1,138,970	+				+0.6
1,138,970	+				-1.9
1,138,978	-				+0.4
1,138,990	-				+2.1
1,138,991	+				-0.5
1,139,038	-				+1.3
1,139,083	-		MMJJ_RS06135	0.14	+0.9
1,139,084	+		MMJJ_RS06135	0.14	+2.1
1,139,084	+		MMJJ_RS06135	0.14	+0.2
1,139,084	+		MMJJ_RS06135	0.14	+0.4
1,139,182	+		MMJJ_RS06135	0.27	+0.9
1,139,184	+		MMJJ_RS06135	0.27	+0.2
1,139,197	-		MMJJ_RS06135	0.29	+0.2
1,139,197	-		MMJJ_RS06135	0.29	+0.3
1,139,198	+		MMJJ_RS06135	0.29	+2.0
1,139,247	-		MMJJ_RS06135	0.35	-0.5
1,139,247	-		MMJJ_RS06135	0.35	+0.7
1,139,247	-		MMJJ_RS06135	0.35	+0.2
1,139,247	-		MMJJ_RS06135	0.35	+0.6
1,139,247	-		MMJJ_RS06135	0.35	+0.6
1,139,247	-		MMJJ_RS06135	0.35	-0.2
1,139,247	-		MMJJ_RS06135	0.35	-0.2
1,139,248	+		MMJJ_RS06135	0.35	+3.6
1,139,248	+		MMJJ_RS06135	0.35	-0.4
1,139,250	-		MMJJ_RS06135	0.36	+0.8
1,139,251	+		MMJJ_RS06135	0.36	+0.7
1,139,305	-		MMJJ_RS06135	0.43	-0.1
1,139,305	-		MMJJ_RS06135	0.43	+0.7
1,139,306	+		MMJJ_RS06135	0.43	-0.5
1,139,332	-		MMJJ_RS06135	0.46	+0.8
1,139,359	-		MMJJ_RS06135	0.50	+0.2