Experiment: Formate pooled triplicate planktonic cells
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04370 and MMJJ_RS04375 are separated by 6 nucleotides MMJJ_RS04375 and MMJJ_RS04380 are separated by 551 nucleotides
MMJJ_RS04370: MMJJ_RS04370 - SIR2 family protein, at 814,286 to 815,947
_RS04370
MMJJ_RS04375: MMJJ_RS04375 - hypothetical protein, at 815,954 to 816,154
_RS04375
MMJJ_RS04380: MMJJ_RS04380 - DUF2254 domain-containing protein, at 816,706 to 818,424
_RS04380
Position (kb) 815
816
817 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 814.974 kb on + strand, within MMJJ_RS04370 at 814.974 kb on + strand, within MMJJ_RS04370 at 814.974 kb on + strand, within MMJJ_RS04370 at 814.974 kb on + strand, within MMJJ_RS04370 at 814.978 kb on - strand, within MMJJ_RS04370 at 814.978 kb on - strand, within MMJJ_RS04370 at 814.979 kb on + strand, within MMJJ_RS04370 at 815.001 kb on + strand, within MMJJ_RS04370 at 815.008 kb on + strand, within MMJJ_RS04370 at 815.018 kb on - strand, within MMJJ_RS04370 at 815.056 kb on - strand, within MMJJ_RS04370 at 815.057 kb on + strand, within MMJJ_RS04370 at 815.061 kb on - strand, within MMJJ_RS04370 at 815.061 kb on - strand, within MMJJ_RS04370 at 815.061 kb on - strand, within MMJJ_RS04370 at 815.075 kb on + strand, within MMJJ_RS04370 at 815.075 kb on + strand, within MMJJ_RS04370 at 815.096 kb on - strand, within MMJJ_RS04370 at 815.096 kb on - strand, within MMJJ_RS04370 at 815.097 kb on + strand, within MMJJ_RS04370 at 815.144 kb on + strand, within MMJJ_RS04370 at 815.144 kb on + strand, within MMJJ_RS04370 at 815.167 kb on + strand, within MMJJ_RS04370 at 815.167 kb on + strand, within MMJJ_RS04370 at 815.168 kb on - strand, within MMJJ_RS04370 at 815.169 kb on + strand, within MMJJ_RS04370 at 815.169 kb on + strand, within MMJJ_RS04370 at 815.227 kb on + strand, within MMJJ_RS04370 at 815.249 kb on + strand, within MMJJ_RS04370 at 815.273 kb on - strand, within MMJJ_RS04370 at 815.273 kb on - strand, within MMJJ_RS04370 at 815.274 kb on + strand, within MMJJ_RS04370 at 815.295 kb on + strand, within MMJJ_RS04370 at 815.302 kb on - strand, within MMJJ_RS04370 at 815.302 kb on - strand, within MMJJ_RS04370 at 815.302 kb on - strand, within MMJJ_RS04370 at 815.303 kb on + strand, within MMJJ_RS04370 at 815.324 kb on - strand, within MMJJ_RS04370 at 815.325 kb on + strand, within MMJJ_RS04370 at 815.325 kb on + strand, within MMJJ_RS04370 at 815.368 kb on - strand, within MMJJ_RS04370 at 815.368 kb on - strand, within MMJJ_RS04370 at 815.368 kb on - strand, within MMJJ_RS04370 at 815.379 kb on - strand, within MMJJ_RS04370 at 815.379 kb on - strand, within MMJJ_RS04370 at 815.379 kb on - strand, within MMJJ_RS04370 at 815.380 kb on + strand, within MMJJ_RS04370 at 815.380 kb on + strand, within MMJJ_RS04370 at 815.380 kb on + strand, within MMJJ_RS04370 at 815.380 kb on + strand, within MMJJ_RS04370 at 815.380 kb on + strand, within MMJJ_RS04370 at 815.380 kb on + strand, within MMJJ_RS04370 at 815.381 kb on - strand, within MMJJ_RS04370 at 815.382 kb on + strand, within MMJJ_RS04370 at 815.408 kb on - strand, within MMJJ_RS04370 at 815.408 kb on - strand, within MMJJ_RS04370 at 815.408 kb on - strand, within MMJJ_RS04370 at 815.408 kb on - strand, within MMJJ_RS04370 at 815.409 kb on + strand, within MMJJ_RS04370 at 815.414 kb on - strand, within MMJJ_RS04370 at 815.420 kb on + strand, within MMJJ_RS04370 at 815.462 kb on - strand, within MMJJ_RS04370 at 815.462 kb on - strand, within MMJJ_RS04370 at 815.462 kb on - strand, within MMJJ_RS04370 at 815.463 kb on + strand at 815.468 kb on + strand, within MMJJ_RS04370 at 815.623 kb on - strand, within MMJJ_RS04370 at 815.623 kb on - strand at 815.623 kb on - strand, within MMJJ_RS04370 at 815.624 kb on + strand, within MMJJ_RS04370 at 815.624 kb on + strand, within MMJJ_RS04370 at 815.625 kb on - strand, within MMJJ_RS04370 at 815.625 kb on - strand, within MMJJ_RS04370 at 815.625 kb on - strand, within MMJJ_RS04370 at 815.625 kb on - strand, within MMJJ_RS04370 at 815.626 kb on + strand, within MMJJ_RS04370 at 815.626 kb on + strand, within MMJJ_RS04370 at 815.626 kb on + strand, within MMJJ_RS04370 at 815.626 kb on + strand, within MMJJ_RS04370 at 815.627 kb on - strand, within MMJJ_RS04370 at 815.627 kb on - strand, within MMJJ_RS04370 at 815.627 kb on - strand, within MMJJ_RS04370 at 815.628 kb on + strand, within MMJJ_RS04370 at 815.636 kb on - strand, within MMJJ_RS04370 at 815.666 kb on - strand, within MMJJ_RS04370 at 815.733 kb on + strand, within MMJJ_RS04370 at 815.733 kb on + strand, within MMJJ_RS04370 at 815.759 kb on - strand, within MMJJ_RS04370 at 815.760 kb on + strand, within MMJJ_RS04370 at 815.771 kb on - strand, within MMJJ_RS04370 at 815.775 kb on + strand, within MMJJ_RS04370 at 815.798 kb on + strand at 815.807 kb on - strand at 815.810 kb on - strand at 815.810 kb on - strand at 815.811 kb on + strand at 815.814 kb on + strand at 815.814 kb on + strand at 815.833 kb on - strand at 815.857 kb on + strand at 815.857 kb on + strand at 815.873 kb on - strand at 815.874 kb on + strand at 815.902 kb on - strand at 815.902 kb on - strand at 815.902 kb on - strand at 815.902 kb on - strand at 815.903 kb on + strand at 815.908 kb on - strand at 815.950 kb on - strand at 815.950 kb on - strand at 815.950 kb on - strand at 815.950 kb on - strand at 815.950 kb on - strand at 815.950 kb on - strand at 815.951 kb on + strand at 815.955 kb on - strand at 816.032 kb on - strand, within MMJJ_RS04375 at 816.102 kb on + strand, within MMJJ_RS04375 at 816.121 kb on - strand, within MMJJ_RS04375 at 816.133 kb on - strand, within MMJJ_RS04375 at 816.157 kb on - strand at 816.180 kb on - strand at 816.180 kb on - strand at 816.184 kb on - strand at 816.184 kb on - strand at 816.184 kb on - strand at 816.184 kb on - strand at 816.184 kb on - strand at 816.185 kb on + strand at 816.185 kb on + strand at 816.186 kb on - strand at 816.186 kb on - strand at 816.203 kb on - strand at 816.203 kb on - strand at 816.203 kb on - strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.299 kb on - strand at 816.300 kb on + strand at 816.300 kb on + strand at 816.300 kb on + strand at 816.303 kb on + strand at 816.303 kb on + strand at 816.369 kb on - strand at 816.383 kb on - strand at 816.383 kb on - strand at 816.400 kb on + strand at 816.429 kb on - strand at 816.452 kb on - strand at 816.478 kb on + strand at 816.484 kb on + strand at 816.517 kb on + strand at 816.520 kb on + strand at 816.541 kb on + strand at 816.556 kb on - strand at 816.556 kb on - strand at 816.561 kb on - strand at 816.562 kb on + strand at 816.562 kb on + strand at 816.576 kb on + strand at 816.650 kb on + strand at 816.681 kb on + strand at 816.681 kb on + strand at 816.684 kb on - strand at 816.684 kb on - strand at 816.701 kb on + strand at 816.707 kb on - strand at 816.711 kb on - strand at 816.725 kb on - strand at 816.851 kb on + strand at 816.851 kb on + strand at 816.910 kb on - strand, within MMJJ_RS04380 at 816.910 kb on - strand at 816.910 kb on - strand, within MMJJ_RS04380 at 816.944 kb on + strand, within MMJJ_RS04380 at 816.966 kb on + strand, within MMJJ_RS04380 at 816.980 kb on - strand, within MMJJ_RS04380 at 816.981 kb on + strand, within MMJJ_RS04380 at 817.018 kb on - strand, within MMJJ_RS04380 at 817.019 kb on + strand, within MMJJ_RS04380 at 817.022 kb on - strand, within MMJJ_RS04380 at 817.042 kb on - strand, within MMJJ_RS04380 at 817.057 kb on - strand, within MMJJ_RS04380 at 817.094 kb on - strand, within MMJJ_RS04380 at 817.125 kb on + strand, within MMJJ_RS04380
Per-strain Table
Position Strand Gene LocusTag Fraction Formate pooled triplicate planktonic cells remove 814,974 + MMJJ_RS04370 0.41 +0.3 814,974 + MMJJ_RS04370 0.41 -0.7 814,974 + MMJJ_RS04370 0.41 +0.2 814,974 + MMJJ_RS04370 0.41 -0.4 814,978 - MMJJ_RS04370 0.42 -0.6 814,978 - MMJJ_RS04370 0.42 +0.0 814,979 + MMJJ_RS04370 0.42 -0.1 815,001 + MMJJ_RS04370 0.43 -0.3 815,008 + MMJJ_RS04370 0.43 +1.3 815,018 - MMJJ_RS04370 0.44 -0.2 815,056 - MMJJ_RS04370 0.46 +2.7 815,057 + MMJJ_RS04370 0.46 -0.3 815,061 - MMJJ_RS04370 0.47 -0.1 815,061 - MMJJ_RS04370 0.47 +0.1 815,061 - MMJJ_RS04370 0.47 -0.0 815,075 + MMJJ_RS04370 0.47 -0.4 815,075 + MMJJ_RS04370 0.47 +0.4 815,096 - MMJJ_RS04370 0.49 -0.6 815,096 - MMJJ_RS04370 0.49 +2.2 815,097 + MMJJ_RS04370 0.49 +0.5 815,144 + MMJJ_RS04370 0.52 +0.4 815,144 + MMJJ_RS04370 0.52 -0.3 815,167 + MMJJ_RS04370 0.53 +0.0 815,167 + MMJJ_RS04370 0.53 -0.5 815,168 - MMJJ_RS04370 0.53 +0.3 815,169 + MMJJ_RS04370 0.53 -1.7 815,169 + MMJJ_RS04370 0.53 +0.4 815,227 + MMJJ_RS04370 0.57 +0.5 815,249 + MMJJ_RS04370 0.58 +0.7 815,273 - MMJJ_RS04370 0.59 -0.5 815,273 - MMJJ_RS04370 0.59 +0.6 815,274 + MMJJ_RS04370 0.59 -0.5 815,295 + MMJJ_RS04370 0.61 -0.3 815,302 - MMJJ_RS04370 0.61 +0.0 815,302 - MMJJ_RS04370 0.61 -1.0 815,302 - MMJJ_RS04370 0.61 -0.0 815,303 + MMJJ_RS04370 0.61 +4.1 815,324 - MMJJ_RS04370 0.62 +1.5 815,325 + MMJJ_RS04370 0.63 +1.3 815,325 + MMJJ_RS04370 0.63 +0.3 815,368 - MMJJ_RS04370 0.65 -0.6 815,368 - MMJJ_RS04370 0.65 +0.1 815,368 - MMJJ_RS04370 0.65 -0.2 815,379 - MMJJ_RS04370 0.66 +0.0 815,379 - MMJJ_RS04370 0.66 -0.3 815,379 - MMJJ_RS04370 0.66 +0.4 815,380 + MMJJ_RS04370 0.66 +0.1 815,380 + MMJJ_RS04370 0.66 +0.2 815,380 + MMJJ_RS04370 0.66 +0.3 815,380 + MMJJ_RS04370 0.66 -0.4 815,380 + MMJJ_RS04370 0.66 -0.3 815,380 + MMJJ_RS04370 0.66 +0.2 815,381 - MMJJ_RS04370 0.66 +0.4 815,382 + MMJJ_RS04370 0.66 +0.0 815,408 - MMJJ_RS04370 0.68 +0.2 815,408 - MMJJ_RS04370 0.68 -0.8 815,408 - MMJJ_RS04370 0.68 +0.8 815,408 - MMJJ_RS04370 0.68 -0.7 815,409 + MMJJ_RS04370 0.68 +0.8 815,414 - MMJJ_RS04370 0.68 +0.6 815,420 + MMJJ_RS04370 0.68 -0.5 815,462 - MMJJ_RS04370 0.71 -0.5 815,462 - MMJJ_RS04370 0.71 +0.2 815,462 - MMJJ_RS04370 0.71 -0.6 815,463 + -0.7 815,468 + MMJJ_RS04370 0.71 -0.1 815,623 - MMJJ_RS04370 0.80 +0.3 815,623 - +0.8 815,623 - MMJJ_RS04370 0.80 -1.7 815,624 + MMJJ_RS04370 0.81 +0.3 815,624 + MMJJ_RS04370 0.81 +0.1 815,625 - MMJJ_RS04370 0.81 +0.3 815,625 - MMJJ_RS04370 0.81 -0.1 815,625 - MMJJ_RS04370 0.81 +0.2 815,625 - MMJJ_RS04370 0.81 -0.9 815,626 + MMJJ_RS04370 0.81 -2.0 815,626 + MMJJ_RS04370 0.81 -0.1 815,626 + MMJJ_RS04370 0.81 +0.7 815,626 + MMJJ_RS04370 0.81 -0.1 815,627 - MMJJ_RS04370 0.81 -0.0 815,627 - MMJJ_RS04370 0.81 +0.1 815,627 - MMJJ_RS04370 0.81 +0.5 815,628 + MMJJ_RS04370 0.81 -0.7 815,636 - MMJJ_RS04370 0.81 +0.6 815,666 - MMJJ_RS04370 0.83 -0.1 815,733 + MMJJ_RS04370 0.87 -2.2 815,733 + MMJJ_RS04370 0.87 -0.3 815,759 - MMJJ_RS04370 0.89 -0.4 815,760 + MMJJ_RS04370 0.89 +0.2 815,771 - MMJJ_RS04370 0.89 +0.6 815,775 + MMJJ_RS04370 0.90 +0.6 815,798 + +0.5 815,807 - -0.2 815,810 - +0.2 815,810 - -0.3 815,811 + +2.6 815,814 + -0.2 815,814 + -0.5 815,833 - -2.2 815,857 + -0.3 815,857 + -0.8 815,873 - -0.3 815,874 + +0.3 815,902 - +0.4 815,902 - +0.6 815,902 - -0.5 815,902 - -0.1 815,903 + +0.8 815,908 - -2.2 815,950 - -0.2 815,950 - -0.3 815,950 - -0.2 815,950 - -0.6 815,950 - +0.2 815,950 - -0.3 815,951 + -0.6 815,955 - +0.6 816,032 - MMJJ_RS04375 0.39 +0.7 816,102 + MMJJ_RS04375 0.74 +0.3 816,121 - MMJJ_RS04375 0.83 +0.0 816,133 - MMJJ_RS04375 0.89 +0.6 816,157 - -0.9 816,180 - +0.1 816,180 - +0.4 816,184 - +0.2 816,184 - -1.7 816,184 - +0.2 816,184 - +0.3 816,184 - +0.8 816,185 + +0.0 816,185 + -0.5 816,186 - -1.0 816,186 - +0.1 816,203 - -0.4 816,203 - +0.3 816,203 - +2.4 816,204 + -0.2 816,204 + +0.1 816,205 - -0.2 816,205 - +0.5 816,205 - +0.4 816,299 - +1.3 816,300 + -0.1 816,300 + -0.3 816,300 + +0.4 816,303 + +0.0 816,303 + -0.7 816,369 - -0.5 816,383 - +1.0 816,383 - +0.3 816,400 + +0.1 816,429 - -0.4 816,452 - +0.5 816,478 + -0.1 816,484 + +1.2 816,517 + +0.0 816,520 + -0.4 816,541 + -0.7 816,556 - +0.1 816,556 - +0.1 816,561 - -0.6 816,562 + -0.3 816,562 + +0.4 816,576 + -0.1 816,650 + -0.3 816,681 + -1.0 816,681 + -0.2 816,684 - -0.2 816,684 - -0.4 816,701 + +0.4 816,707 - -0.4 816,711 - +1.0 816,725 - -1.7 816,851 + +0.0 816,851 + +2.2 816,910 - MMJJ_RS04380 0.12 +0.2 816,910 - +1.2 816,910 - MMJJ_RS04380 0.12 -0.4 816,944 + MMJJ_RS04380 0.14 -0.6 816,966 + MMJJ_RS04380 0.15 +0.1 816,980 - MMJJ_RS04380 0.16 -0.2 816,981 + MMJJ_RS04380 0.16 +0.0 817,018 - MMJJ_RS04380 0.18 +0.5 817,019 + MMJJ_RS04380 0.18 -0.2 817,022 - MMJJ_RS04380 0.18 +0.5 817,042 - MMJJ_RS04380 0.20 -0.2 817,057 - MMJJ_RS04380 0.20 +2.8 817,094 - MMJJ_RS04380 0.23 +0.2 817,125 + MMJJ_RS04380 0.24 -0.2
Or see this region's nucleotide sequence