Experiment: Formate pooled triplicate planktonic cells
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04185 and MMJJ_RS04190 are separated by 22 nucleotides MMJJ_RS04190 and MMJJ_RS04195 are separated by 113 nucleotides MMJJ_RS04195 and MMJJ_RS04200 are separated by 11 nucleotides
MMJJ_RS04185: MMJJ_RS04185 - cadmium-translocating P-type ATPase, at 778,085 to 780,160
_RS04185
MMJJ_RS04190: MMJJ_RS04190 - hypothetical protein, at 780,183 to 780,593
_RS04190
MMJJ_RS04195: MMJJ_RS04195 - XTP/dITP diphosphatase, at 780,707 to 781,261
_RS04195
MMJJ_RS04200: MMJJ_RS04200 - triphosphoribosyl-dephospho-CoA synthase, at 781,273 to 782,154
_RS04200
Position (kb) 780
781 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 779.219 kb on - strand, within MMJJ_RS04185 at 779.219 kb on - strand, within MMJJ_RS04185 at 779.219 kb on - strand, within MMJJ_RS04185 at 779.219 kb on - strand, within MMJJ_RS04185 at 779.219 kb on - strand, within MMJJ_RS04185 at 779.220 kb on + strand, within MMJJ_RS04185 at 779.220 kb on + strand, within MMJJ_RS04185 at 779.220 kb on + strand, within MMJJ_RS04185 at 779.220 kb on + strand, within MMJJ_RS04185 at 779.221 kb on - strand, within MMJJ_RS04185 at 779.242 kb on - strand, within MMJJ_RS04185 at 779.242 kb on - strand, within MMJJ_RS04185 at 779.242 kb on - strand, within MMJJ_RS04185 at 779.243 kb on + strand, within MMJJ_RS04185 at 779.246 kb on - strand, within MMJJ_RS04185 at 779.246 kb on - strand, within MMJJ_RS04185 at 779.247 kb on + strand, within MMJJ_RS04185 at 779.247 kb on + strand, within MMJJ_RS04185 at 779.275 kb on - strand, within MMJJ_RS04185 at 779.351 kb on + strand, within MMJJ_RS04185 at 779.366 kb on + strand, within MMJJ_RS04185 at 779.366 kb on + strand, within MMJJ_RS04185 at 779.450 kb on + strand, within MMJJ_RS04185 at 779.450 kb on + strand, within MMJJ_RS04185 at 779.562 kb on + strand, within MMJJ_RS04185 at 779.597 kb on - strand, within MMJJ_RS04185 at 779.606 kb on - strand, within MMJJ_RS04185 at 779.606 kb on - strand, within MMJJ_RS04185 at 779.607 kb on + strand, within MMJJ_RS04185 at 779.607 kb on + strand, within MMJJ_RS04185 at 779.607 kb on + strand, within MMJJ_RS04185 at 779.608 kb on - strand, within MMJJ_RS04185 at 779.628 kb on - strand, within MMJJ_RS04185 at 779.655 kb on - strand, within MMJJ_RS04185 at 779.663 kb on + strand, within MMJJ_RS04185 at 779.713 kb on - strand, within MMJJ_RS04185 at 779.819 kb on + strand, within MMJJ_RS04185 at 779.947 kb on + strand, within MMJJ_RS04185 at 780.056 kb on + strand at 780.059 kb on + strand at 780.069 kb on - strand at 780.168 kb on - strand at 780.173 kb on - strand at 780.198 kb on - strand at 780.223 kb on + strand at 780.224 kb on - strand, within MMJJ_RS04190 at 780.224 kb on - strand, within MMJJ_RS04190 at 780.224 kb on - strand, within MMJJ_RS04190 at 780.225 kb on + strand, within MMJJ_RS04190 at 780.227 kb on - strand, within MMJJ_RS04190 at 780.227 kb on - strand, within MMJJ_RS04190 at 780.227 kb on - strand, within MMJJ_RS04190 at 780.227 kb on - strand, within MMJJ_RS04190 at 780.228 kb on + strand, within MMJJ_RS04190 at 780.228 kb on + strand, within MMJJ_RS04190 at 780.228 kb on + strand, within MMJJ_RS04190 at 780.229 kb on - strand, within MMJJ_RS04190 at 780.230 kb on + strand, within MMJJ_RS04190 at 780.253 kb on - strand, within MMJJ_RS04190 at 780.253 kb on - strand, within MMJJ_RS04190 at 780.253 kb on - strand, within MMJJ_RS04190 at 780.254 kb on + strand, within MMJJ_RS04190 at 780.254 kb on + strand, within MMJJ_RS04190 at 780.254 kb on + strand, within MMJJ_RS04190 at 780.254 kb on + strand, within MMJJ_RS04190 at 780.254 kb on + strand, within MMJJ_RS04190 at 780.254 kb on + strand, within MMJJ_RS04190 at 780.254 kb on + strand, within MMJJ_RS04190 at 780.254 kb on + strand, within MMJJ_RS04190 at 780.254 kb on + strand, within MMJJ_RS04190 at 780.312 kb on - strand, within MMJJ_RS04190 at 780.325 kb on - strand, within MMJJ_RS04190 at 780.329 kb on - strand, within MMJJ_RS04190 at 780.330 kb on + strand, within MMJJ_RS04190 at 780.336 kb on + strand, within MMJJ_RS04190 at 780.344 kb on - strand, within MMJJ_RS04190 at 780.356 kb on - strand, within MMJJ_RS04190 at 780.356 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.361 kb on + strand, within MMJJ_RS04190 at 780.361 kb on + strand, within MMJJ_RS04190 at 780.361 kb on + strand, within MMJJ_RS04190 at 780.361 kb on + strand, within MMJJ_RS04190 at 780.361 kb on + strand, within MMJJ_RS04190 at 780.361 kb on + strand, within MMJJ_RS04190 at 780.383 kb on + strand, within MMJJ_RS04190 at 780.391 kb on + strand, within MMJJ_RS04190 at 780.391 kb on + strand, within MMJJ_RS04190 at 780.553 kb on + strand at 780.567 kb on - strand at 780.594 kb on - strand at 780.595 kb on + strand at 780.613 kb on - strand at 780.614 kb on + strand at 780.614 kb on + strand at 780.614 kb on + strand at 780.639 kb on - strand at 780.641 kb on - strand at 780.642 kb on + strand at 780.642 kb on + strand at 780.645 kb on - strand at 780.645 kb on - strand at 780.645 kb on - strand at 780.645 kb on - strand at 780.646 kb on + strand at 780.669 kb on - strand at 780.673 kb on + strand at 780.746 kb on + strand at 780.760 kb on - strand at 780.763 kb on + strand, within MMJJ_RS04195 at 780.856 kb on + strand, within MMJJ_RS04195 at 780.888 kb on - strand, within MMJJ_RS04195 at 780.888 kb on - strand, within MMJJ_RS04195 at 780.888 kb on - strand, within MMJJ_RS04195 at 780.888 kb on - strand, within MMJJ_RS04195 at 780.888 kb on - strand, within MMJJ_RS04195 at 780.889 kb on + strand, within MMJJ_RS04195 at 780.889 kb on + strand, within MMJJ_RS04195 at 780.941 kb on - strand, within MMJJ_RS04195 at 780.941 kb on - strand, within MMJJ_RS04195 at 780.941 kb on - strand, within MMJJ_RS04195 at 780.942 kb on + strand, within MMJJ_RS04195 at 780.965 kb on + strand, within MMJJ_RS04195 at 781.043 kb on - strand, within MMJJ_RS04195 at 781.043 kb on - strand, within MMJJ_RS04195 at 781.044 kb on + strand, within MMJJ_RS04195 at 781.044 kb on + strand, within MMJJ_RS04195 at 781.066 kb on + strand, within MMJJ_RS04195 at 781.090 kb on - strand, within MMJJ_RS04195 at 781.162 kb on - strand, within MMJJ_RS04195 at 781.246 kb on + strand at 781.377 kb on + strand, within MMJJ_RS04200 at 781.382 kb on + strand, within MMJJ_RS04200 at 781.422 kb on + strand, within MMJJ_RS04200 at 781.449 kb on - strand, within MMJJ_RS04200 at 781.478 kb on - strand, within MMJJ_RS04200 at 781.479 kb on + strand, within MMJJ_RS04200 at 781.523 kb on - strand, within MMJJ_RS04200 at 781.528 kb on + strand, within MMJJ_RS04200
Per-strain Table
Position Strand Gene LocusTag Fraction Formate pooled triplicate planktonic cells remove 779,219 - MMJJ_RS04185 0.55 -0.2 779,219 - MMJJ_RS04185 0.55 +0.3 779,219 - MMJJ_RS04185 0.55 +0.5 779,219 - MMJJ_RS04185 0.55 -0.2 779,219 - MMJJ_RS04185 0.55 -2.0 779,220 + MMJJ_RS04185 0.55 -0.2 779,220 + MMJJ_RS04185 0.55 -0.2 779,220 + MMJJ_RS04185 0.55 +0.7 779,220 + MMJJ_RS04185 0.55 -0.4 779,221 - MMJJ_RS04185 0.55 +0.3 779,242 - MMJJ_RS04185 0.56 +0.2 779,242 - MMJJ_RS04185 0.56 +0.1 779,242 - MMJJ_RS04185 0.56 -0.3 779,243 + MMJJ_RS04185 0.56 +1.2 779,246 - MMJJ_RS04185 0.56 +2.8 779,246 - MMJJ_RS04185 0.56 +0.2 779,247 + MMJJ_RS04185 0.56 -0.5 779,247 + MMJJ_RS04185 0.56 -1.2 779,275 - MMJJ_RS04185 0.57 -2.8 779,351 + MMJJ_RS04185 0.61 -0.2 779,366 + MMJJ_RS04185 0.62 -0.1 779,366 + MMJJ_RS04185 0.62 +0.5 779,450 + MMJJ_RS04185 0.66 +0.0 779,450 + MMJJ_RS04185 0.66 +0.2 779,562 + MMJJ_RS04185 0.71 -0.0 779,597 - MMJJ_RS04185 0.73 -0.1 779,606 - MMJJ_RS04185 0.73 +0.6 779,606 - MMJJ_RS04185 0.73 -0.1 779,607 + MMJJ_RS04185 0.73 -0.3 779,607 + MMJJ_RS04185 0.73 -0.2 779,607 + MMJJ_RS04185 0.73 +0.2 779,608 - MMJJ_RS04185 0.73 +0.2 779,628 - MMJJ_RS04185 0.74 -0.3 779,655 - MMJJ_RS04185 0.76 +0.2 779,663 + MMJJ_RS04185 0.76 -1.0 779,713 - MMJJ_RS04185 0.78 +0.4 779,819 + MMJJ_RS04185 0.84 -0.6 779,947 + MMJJ_RS04185 0.90 +0.3 780,056 + +0.1 780,059 + -0.8 780,069 - +2.1 780,168 - +0.9 780,173 - +0.2 780,198 - -0.1 780,223 + -0.4 780,224 - MMJJ_RS04190 0.10 -0.3 780,224 - MMJJ_RS04190 0.10 +0.3 780,224 - MMJJ_RS04190 0.10 +2.8 780,225 + MMJJ_RS04190 0.10 +0.0 780,227 - MMJJ_RS04190 0.11 +0.8 780,227 - MMJJ_RS04190 0.11 +0.5 780,227 - MMJJ_RS04190 0.11 +3.4 780,227 - MMJJ_RS04190 0.11 -0.7 780,228 + MMJJ_RS04190 0.11 +2.4 780,228 + MMJJ_RS04190 0.11 -0.2 780,228 + MMJJ_RS04190 0.11 -0.2 780,229 - MMJJ_RS04190 0.11 +0.3 780,230 + MMJJ_RS04190 0.11 +0.2 780,253 - MMJJ_RS04190 0.17 +0.5 780,253 - MMJJ_RS04190 0.17 -0.0 780,253 - MMJJ_RS04190 0.17 +0.3 780,254 + MMJJ_RS04190 0.17 -0.1 780,254 + MMJJ_RS04190 0.17 +1.2 780,254 + MMJJ_RS04190 0.17 -0.4 780,254 + MMJJ_RS04190 0.17 -0.2 780,254 + MMJJ_RS04190 0.17 +1.9 780,254 + MMJJ_RS04190 0.17 +0.2 780,254 + MMJJ_RS04190 0.17 -0.5 780,254 + MMJJ_RS04190 0.17 +0.4 780,254 + MMJJ_RS04190 0.17 +0.2 780,312 - MMJJ_RS04190 0.31 -0.3 780,325 - MMJJ_RS04190 0.35 -0.5 780,329 - MMJJ_RS04190 0.36 +0.4 780,330 + MMJJ_RS04190 0.36 -0.0 780,336 + MMJJ_RS04190 0.37 -0.2 780,344 - MMJJ_RS04190 0.39 -0.3 780,356 - MMJJ_RS04190 0.42 -0.5 780,356 - MMJJ_RS04190 0.42 +0.1 780,360 - MMJJ_RS04190 0.43 -1.2 780,360 - MMJJ_RS04190 0.43 +0.2 780,360 - MMJJ_RS04190 0.43 -0.8 780,360 - MMJJ_RS04190 0.43 +0.7 780,360 - MMJJ_RS04190 0.43 +0.0 780,360 - MMJJ_RS04190 0.43 +1.8 780,360 - MMJJ_RS04190 0.43 -1.0 780,360 - MMJJ_RS04190 0.43 +0.8 780,361 + MMJJ_RS04190 0.43 -0.2 780,361 + MMJJ_RS04190 0.43 +0.7 780,361 + MMJJ_RS04190 0.43 -0.2 780,361 + MMJJ_RS04190 0.43 +0.3 780,361 + MMJJ_RS04190 0.43 +0.1 780,361 + MMJJ_RS04190 0.43 -0.1 780,383 + MMJJ_RS04190 0.49 +1.8 780,391 + MMJJ_RS04190 0.51 +0.6 780,391 + MMJJ_RS04190 0.51 +0.8 780,553 + +1.0 780,567 - -0.3 780,594 - -0.0 780,595 + -0.4 780,613 - -3.0 780,614 + -0.5 780,614 + +0.1 780,614 + -0.4 780,639 - -0.6 780,641 - +0.3 780,642 + +0.9 780,642 + -0.2 780,645 - +0.1 780,645 - -0.2 780,645 - -0.2 780,645 - -0.2 780,646 + +0.2 780,669 - +0.3 780,673 + +0.8 780,746 + +0.1 780,760 - -0.3 780,763 + MMJJ_RS04195 0.10 -0.1 780,856 + MMJJ_RS04195 0.27 +0.4 780,888 - MMJJ_RS04195 0.33 -0.2 780,888 - MMJJ_RS04195 0.33 -0.2 780,888 - MMJJ_RS04195 0.33 +0.1 780,888 - MMJJ_RS04195 0.33 -0.3 780,888 - MMJJ_RS04195 0.33 -0.3 780,889 + MMJJ_RS04195 0.33 +0.5 780,889 + MMJJ_RS04195 0.33 -0.4 780,941 - MMJJ_RS04195 0.42 -0.2 780,941 - MMJJ_RS04195 0.42 +0.1 780,941 - MMJJ_RS04195 0.42 -0.3 780,942 + MMJJ_RS04195 0.42 -1.8 780,965 + MMJJ_RS04195 0.46 -0.1 781,043 - MMJJ_RS04195 0.61 -0.5 781,043 - MMJJ_RS04195 0.61 -0.4 781,044 + MMJJ_RS04195 0.61 -0.9 781,044 + MMJJ_RS04195 0.61 +0.0 781,066 + MMJJ_RS04195 0.65 -0.4 781,090 - MMJJ_RS04195 0.69 -0.9 781,162 - MMJJ_RS04195 0.82 +0.2 781,246 + -0.2 781,377 + MMJJ_RS04200 0.12 -1.4 781,382 + MMJJ_RS04200 0.12 -1.2 781,422 + MMJJ_RS04200 0.17 -4.4 781,449 - MMJJ_RS04200 0.20 -3.2 781,478 - MMJJ_RS04200 0.23 -5.0 781,479 + MMJJ_RS04200 0.23 -5.8 781,523 - MMJJ_RS04200 0.28 -4.2 781,528 + MMJJ_RS04200 0.29 -4.1
Or see this region's nucleotide sequence