Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02905

Experiment: Formate pooled triplicate planktonic cells

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02895 and MMJJ_RS02900 are separated by 156 nucleotidesMMJJ_RS02900 and MMJJ_RS02905 are separated by 33 nucleotidesMMJJ_RS02905 and MMJJ_RS02910 are separated by 132 nucleotidesMMJJ_RS02910 and MMJJ_RS02915 are separated by 206 nucleotides MMJJ_RS02895: MMJJ_RS02895 - ATP-binding protein, at 544,725 to 545,570 _RS02895 MMJJ_RS02900: MMJJ_RS02900 - hypothetical protein, at 545,727 to 546,011 _RS02900 MMJJ_RS02905: MMJJ_RS02905 - NifB/NifX family molybdenum-iron cluster-binding protein, at 546,045 to 546,404 _RS02905 MMJJ_RS02910: MMJJ_RS02910 - NifB/NifX family molybdenum-iron cluster-binding protein, at 546,537 to 546,938 _RS02910 MMJJ_RS02915: MMJJ_RS02915 - hypothetical protein, at 547,145 to 547,381 _RS02915 Position (kb) 546 547Strain fitness (log2 ratio) -2 -1 0 1 2 3at 545.107 kb on - strand, within MMJJ_RS02895at 545.156 kb on + strand, within MMJJ_RS02895at 545.207 kb on + strand, within MMJJ_RS02895at 545.227 kb on - strand, within MMJJ_RS02895at 545.227 kb on - strand, within MMJJ_RS02895at 545.239 kb on - strand, within MMJJ_RS02895at 545.240 kb on + strand, within MMJJ_RS02895at 545.252 kb on - strand, within MMJJ_RS02895at 545.273 kb on + strand, within MMJJ_RS02895at 545.291 kb on - strand, within MMJJ_RS02895at 545.291 kb on - strand, within MMJJ_RS02895at 545.291 kb on - strand, within MMJJ_RS02895at 545.292 kb on + strand, within MMJJ_RS02895at 545.356 kb on + strand, within MMJJ_RS02895at 545.357 kb on - strand, within MMJJ_RS02895at 545.358 kb on + strand, within MMJJ_RS02895at 545.358 kb on + strand, within MMJJ_RS02895at 545.359 kb on - strandat 545.359 kb on - strand, within MMJJ_RS02895at 545.359 kb on - strand, within MMJJ_RS02895at 545.359 kb on - strand, within MMJJ_RS02895at 545.359 kb on - strand, within MMJJ_RS02895at 545.360 kb on + strand, within MMJJ_RS02895at 545.363 kb on + strand, within MMJJ_RS02895at 545.370 kb on + strand, within MMJJ_RS02895at 545.381 kb on - strand, within MMJJ_RS02895at 545.438 kb on + strand, within MMJJ_RS02895at 545.460 kb on + strand, within MMJJ_RS02895at 545.462 kb on - strand, within MMJJ_RS02895at 545.468 kb on + strand, within MMJJ_RS02895at 545.471 kb on - strand, within MMJJ_RS02895at 545.472 kb on + strand, within MMJJ_RS02895at 545.472 kb on + strand, within MMJJ_RS02895at 545.501 kb on + strandat 545.531 kb on - strandat 545.568 kb on - strandat 545.588 kb on - strandat 545.640 kb on + strandat 545.641 kb on - strandat 545.644 kb on + strandat 545.691 kb on - strandat 545.697 kb on + strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.703 kb on + strandat 545.703 kb on + strandat 545.703 kb on + strandat 545.735 kb on - strandat 545.735 kb on - strandat 545.735 kb on - strandat 545.735 kb on - strandat 545.736 kb on + strandat 545.775 kb on + strand, within MMJJ_RS02900at 545.785 kb on + strand, within MMJJ_RS02900at 545.801 kb on - strand, within MMJJ_RS02900at 545.801 kb on - strand, within MMJJ_RS02900at 545.802 kb on + strand, within MMJJ_RS02900at 545.813 kb on - strand, within MMJJ_RS02900at 545.824 kb on - strand, within MMJJ_RS02900at 545.825 kb on + strand, within MMJJ_RS02900at 545.846 kb on - strand, within MMJJ_RS02900at 545.853 kb on + strand, within MMJJ_RS02900at 545.867 kb on - strand, within MMJJ_RS02900at 545.874 kb on + strand, within MMJJ_RS02900at 545.874 kb on + strand, within MMJJ_RS02900at 545.875 kb on - strand, within MMJJ_RS02900at 545.875 kb on - strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 546.023 kb on + strandat 546.064 kb on - strandat 546.233 kb on - strand, within MMJJ_RS02905at 546.328 kb on - strand, within MMJJ_RS02905at 546.328 kb on - strand, within MMJJ_RS02905at 546.329 kb on + strand, within MMJJ_RS02905at 546.329 kb on + strand, within MMJJ_RS02905at 546.344 kb on + strand, within MMJJ_RS02905at 546.352 kb on - strand, within MMJJ_RS02905at 546.439 kb on + strandat 546.443 kb on + strandat 546.447 kb on - strandat 546.449 kb on - strandat 546.450 kb on + strandat 546.450 kb on + strandat 546.451 kb on - strandat 546.451 kb on - strandat 546.478 kb on - strandat 546.513 kb on - strandat 546.552 kb on - strandat 546.552 kb on - strandat 546.552 kb on - strandat 546.553 kb on + strandat 546.553 kb on + strandat 546.553 kb on + strandat 546.596 kb on - strand, within MMJJ_RS02910at 546.612 kb on + strand, within MMJJ_RS02910at 546.676 kb on - strand, within MMJJ_RS02910at 546.712 kb on - strand, within MMJJ_RS02910at 546.715 kb on - strand, within MMJJ_RS02910at 546.716 kb on + strand, within MMJJ_RS02910at 546.770 kb on - strand, within MMJJ_RS02910at 546.781 kb on - strand, within MMJJ_RS02910at 546.800 kb on - strand, within MMJJ_RS02910at 546.801 kb on + strand, within MMJJ_RS02910at 546.802 kb on - strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.805 kb on - strand, within MMJJ_RS02910at 546.808 kb on - strand, within MMJJ_RS02910at 546.809 kb on + strand, within MMJJ_RS02910at 546.809 kb on + strand, within MMJJ_RS02910at 546.810 kb on - strand, within MMJJ_RS02910at 546.810 kb on - strand, within MMJJ_RS02910at 546.810 kb on - strand, within MMJJ_RS02910at 546.811 kb on + strand, within MMJJ_RS02910at 546.811 kb on + strand, within MMJJ_RS02910at 546.844 kb on - strand, within MMJJ_RS02910at 546.862 kb on - strand, within MMJJ_RS02910at 546.864 kb on - strand, within MMJJ_RS02910at 546.888 kb on + strand, within MMJJ_RS02910at 546.910 kb on - strandat 546.911 kb on + strandat 546.928 kb on - strandat 546.994 kb on + strandat 547.014 kb on + strandat 547.021 kb on + strandat 547.025 kb on + strandat 547.025 kb on + strandat 547.042 kb on + strandat 547.043 kb on - strandat 547.043 kb on - strandat 547.055 kb on - strandat 547.056 kb on + strandat 547.060 kb on - strandat 547.079 kb on - strandat 547.083 kb on + strandat 547.086 kb on - strandat 547.086 kb on - strandat 547.086 kb on - strandat 547.110 kb on - strandat 547.128 kb on - strandat 547.128 kb on - strandat 547.161 kb on - strandat 547.162 kb on + strandat 547.162 kb on + strandat 547.181 kb on - strand, within MMJJ_RS02915at 547.181 kb on - strand, within MMJJ_RS02915at 547.182 kb on + strand, within MMJJ_RS02915at 547.182 kb on + strand, within MMJJ_RS02915at 547.201 kb on - strand, within MMJJ_RS02915at 547.229 kb on - strand, within MMJJ_RS02915at 547.285 kb on - strand, within MMJJ_RS02915at 547.323 kb on - strand, within MMJJ_RS02915at 547.323 kb on - strand, within MMJJ_RS02915at 547.323 kb on - strand, within MMJJ_RS02915at 547.324 kb on + strand, within MMJJ_RS02915at 547.324 kb on + strand, within MMJJ_RS02915at 547.375 kb on + strandat 547.384 kb on + strandat 547.384 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate pooled triplicate planktonic cells
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545,107 - MMJJ_RS02895 0.45 -0.4
545,156 + MMJJ_RS02895 0.51 -0.1
545,207 + MMJJ_RS02895 0.57 -0.2
545,227 - MMJJ_RS02895 0.59 +0.4
545,227 - MMJJ_RS02895 0.59 +0.2
545,239 - MMJJ_RS02895 0.61 +0.6
545,240 + MMJJ_RS02895 0.61 +0.3
545,252 - MMJJ_RS02895 0.62 -0.1
545,273 + MMJJ_RS02895 0.65 +0.1
545,291 - MMJJ_RS02895 0.67 -1.0
545,291 - MMJJ_RS02895 0.67 +0.1
545,291 - MMJJ_RS02895 0.67 -0.2
545,292 + MMJJ_RS02895 0.67 +0.2
545,356 + MMJJ_RS02895 0.75 -2.4
545,357 - MMJJ_RS02895 0.75 -0.7
545,358 + MMJJ_RS02895 0.75 +0.0
545,358 + MMJJ_RS02895 0.75 +0.1
545,359 - -1.1
545,359 - MMJJ_RS02895 0.75 -0.0
545,359 - MMJJ_RS02895 0.75 -0.3
545,359 - MMJJ_RS02895 0.75 +0.9
545,359 - MMJJ_RS02895 0.75 -1.4
545,360 + MMJJ_RS02895 0.75 +0.9
545,363 + MMJJ_RS02895 0.75 +0.6
545,370 + MMJJ_RS02895 0.76 +0.1
545,381 - MMJJ_RS02895 0.78 +0.5
545,438 + MMJJ_RS02895 0.84 +0.3
545,460 + MMJJ_RS02895 0.87 +0.5
545,462 - MMJJ_RS02895 0.87 +0.2
545,468 + MMJJ_RS02895 0.88 -1.0
545,471 - MMJJ_RS02895 0.88 +0.6
545,472 + MMJJ_RS02895 0.88 +0.1
545,472 + MMJJ_RS02895 0.88 -0.7
545,501 + +0.1
545,531 - +0.3
545,568 - -0.8
545,588 - +2.8
545,640 + +1.5
545,641 - -0.3
545,644 + +1.9
545,691 - +0.9
545,697 + -1.7
545,702 - +0.3
545,702 - -0.0
545,702 - -0.3
545,702 - -0.5
545,702 - -0.8
545,702 - -0.5
545,703 + -0.1
545,703 + -0.3
545,703 + +1.8
545,735 - +0.7
545,735 - +0.4
545,735 - +0.4
545,735 - +0.8
545,736 + +0.2
545,775 + MMJJ_RS02900 0.17 -0.1
545,785 + MMJJ_RS02900 0.20 -0.7
545,801 - MMJJ_RS02900 0.26 -0.3
545,801 - MMJJ_RS02900 0.26 +0.4
545,802 + MMJJ_RS02900 0.26 +0.2
545,813 - MMJJ_RS02900 0.30 +0.2
545,824 - MMJJ_RS02900 0.34 +0.0
545,825 + MMJJ_RS02900 0.34 +0.1
545,846 - MMJJ_RS02900 0.42 +0.0
545,853 + MMJJ_RS02900 0.44 +0.6
545,867 - MMJJ_RS02900 0.49 +0.4
545,874 + MMJJ_RS02900 0.52 -0.8
545,874 + MMJJ_RS02900 0.52 -0.1
545,875 - MMJJ_RS02900 0.52 -0.1
545,875 - MMJJ_RS02900 0.52 -0.8
545,876 + MMJJ_RS02900 0.52 -0.1
545,876 + MMJJ_RS02900 0.52 -0.1
545,876 + MMJJ_RS02900 0.52 -0.1
545,876 + MMJJ_RS02900 0.52 -0.8
545,876 + MMJJ_RS02900 0.52 -0.0
546,023 + +0.1
546,064 - -0.2
546,233 - MMJJ_RS02905 0.52 +0.9
546,328 - MMJJ_RS02905 0.79 +0.4
546,328 - MMJJ_RS02905 0.79 -0.2
546,329 + MMJJ_RS02905 0.79 +0.9
546,329 + MMJJ_RS02905 0.79 +0.6
546,344 + MMJJ_RS02905 0.83 +3.2
546,352 - MMJJ_RS02905 0.85 -0.1
546,439 + -0.1
546,443 + -0.0
546,447 - +0.4
546,449 - +0.1
546,450 + +0.0
546,450 + +0.2
546,451 - +0.3
546,451 - -2.4
546,478 - +1.5
546,513 - -0.7
546,552 - -0.4
546,552 - -0.0
546,552 - +0.2
546,553 + -0.6
546,553 + +0.7
546,553 + +0.0
546,596 - MMJJ_RS02910 0.15 +1.7
546,612 + MMJJ_RS02910 0.19 -0.2
546,676 - MMJJ_RS02910 0.35 +0.2
546,712 - MMJJ_RS02910 0.44 +0.7
546,715 - MMJJ_RS02910 0.44 +0.4
546,716 + MMJJ_RS02910 0.45 -1.0
546,770 - MMJJ_RS02910 0.58 +0.5
546,781 - MMJJ_RS02910 0.61 +0.1
546,800 - MMJJ_RS02910 0.65 -0.3
546,801 + MMJJ_RS02910 0.66 +0.2
546,802 - MMJJ_RS02910 0.66 +0.2
546,803 + MMJJ_RS02910 0.66 -0.5
546,803 + MMJJ_RS02910 0.66 -0.1
546,803 + MMJJ_RS02910 0.66 -0.8
546,803 + MMJJ_RS02910 0.66 +0.5
546,803 + MMJJ_RS02910 0.66 +0.1
546,805 - MMJJ_RS02910 0.67 -0.2
546,808 - MMJJ_RS02910 0.67 -0.5
546,809 + MMJJ_RS02910 0.68 +0.1
546,809 + MMJJ_RS02910 0.68 -0.6
546,810 - MMJJ_RS02910 0.68 +0.2
546,810 - MMJJ_RS02910 0.68 +0.0
546,810 - MMJJ_RS02910 0.68 +0.2
546,811 + MMJJ_RS02910 0.68 +0.2
546,811 + MMJJ_RS02910 0.68 +0.1
546,844 - MMJJ_RS02910 0.76 +0.0
546,862 - MMJJ_RS02910 0.81 -0.7
546,864 - MMJJ_RS02910 0.81 -0.1
546,888 + MMJJ_RS02910 0.87 -0.0
546,910 - -0.1
546,911 + +0.5
546,928 - -0.0
546,994 + -0.4
547,014 + +0.9
547,021 + +0.1
547,025 + +0.5
547,025 + +0.5
547,042 + -0.3
547,043 - -2.3
547,043 - +0.6
547,055 - +0.2
547,056 + +0.2
547,060 - -1.0
547,079 - +0.3
547,083 + +0.4
547,086 - +0.4
547,086 - +0.4
547,086 - +0.1
547,110 - +2.7
547,128 - -0.9
547,128 - +0.7
547,161 - -0.6
547,162 + +0.5
547,162 + +0.2
547,181 - MMJJ_RS02915 0.15 -0.6
547,181 - MMJJ_RS02915 0.15 -0.2
547,182 + MMJJ_RS02915 0.16 +0.4
547,182 + MMJJ_RS02915 0.16 +0.2
547,201 - MMJJ_RS02915 0.24 +0.2
547,229 - MMJJ_RS02915 0.35 +2.4
547,285 - MMJJ_RS02915 0.59 -0.4
547,323 - MMJJ_RS02915 0.75 -0.4
547,323 - MMJJ_RS02915 0.75 -0.1
547,323 - MMJJ_RS02915 0.75 +0.7
547,324 + MMJJ_RS02915 0.76 -0.8
547,324 + MMJJ_RS02915 0.76 +0.5
547,375 + +0.1
547,384 + -0.8
547,384 + +0.1

Or see this region's nucleotide sequence