Experiment: Formate pooled triplicate planktonic cells
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02350 and MMJJ_RS02355 are separated by 362 nucleotides MMJJ_RS02355 and MMJJ_RS02360 are separated by 616 nucleotides
MMJJ_RS02350: MMJJ_RS02350 - Fic family protein, at 444,968 to 446,257
_RS02350
MMJJ_RS02355: MMJJ_RS02355 - DUF2798 domain-containing protein, at 446,620 to 447,096
_RS02355
MMJJ_RS02360: MMJJ_RS02360 - hypothetical protein, at 447,713 to 448,192
_RS02360
Position (kb) 446
447
448 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 445.634 kb on - strand, within MMJJ_RS02350 at 445.665 kb on - strand, within MMJJ_RS02350 at 445.665 kb on - strand, within MMJJ_RS02350 at 445.832 kb on - strand, within MMJJ_RS02350 at 445.833 kb on + strand, within MMJJ_RS02350 at 445.914 kb on + strand, within MMJJ_RS02350 at 445.935 kb on - strand, within MMJJ_RS02350 at 445.953 kb on + strand, within MMJJ_RS02350 at 445.989 kb on - strand, within MMJJ_RS02350 at 445.997 kb on - strand, within MMJJ_RS02350 at 446.001 kb on - strand, within MMJJ_RS02350 at 446.002 kb on + strand, within MMJJ_RS02350 at 446.005 kb on - strand, within MMJJ_RS02350 at 446.034 kb on - strand, within MMJJ_RS02350 at 446.035 kb on + strand, within MMJJ_RS02350 at 446.035 kb on + strand, within MMJJ_RS02350 at 446.041 kb on - strand, within MMJJ_RS02350 at 446.042 kb on + strand, within MMJJ_RS02350 at 446.044 kb on + strand, within MMJJ_RS02350 at 446.048 kb on + strand, within MMJJ_RS02350 at 446.048 kb on + strand, within MMJJ_RS02350 at 446.062 kb on - strand, within MMJJ_RS02350 at 446.063 kb on + strand, within MMJJ_RS02350 at 446.086 kb on + strand, within MMJJ_RS02350 at 446.098 kb on + strand, within MMJJ_RS02350 at 446.115 kb on - strand, within MMJJ_RS02350 at 446.115 kb on - strand, within MMJJ_RS02350 at 446.116 kb on + strand, within MMJJ_RS02350 at 446.119 kb on - strand, within MMJJ_RS02350 at 446.120 kb on + strand, within MMJJ_RS02350 at 446.120 kb on + strand, within MMJJ_RS02350 at 446.120 kb on + strand, within MMJJ_RS02350 at 446.144 kb on - strand at 446.144 kb on - strand at 446.145 kb on + strand at 446.145 kb on + strand at 446.145 kb on + strand at 446.145 kb on + strand at 446.145 kb on + strand at 446.145 kb on + strand at 446.145 kb on + strand at 446.147 kb on + strand at 446.151 kb on - strand at 446.151 kb on - strand at 446.152 kb on + strand at 446.152 kb on + strand at 446.152 kb on + strand at 446.152 kb on + strand at 446.152 kb on + strand at 446.196 kb on - strand at 446.196 kb on - strand at 446.197 kb on + strand at 446.197 kb on + strand at 446.237 kb on - strand at 446.237 kb on - strand at 446.238 kb on + strand at 446.265 kb on - strand at 446.275 kb on - strand at 446.302 kb on - strand at 446.302 kb on - strand at 446.306 kb on - strand at 446.326 kb on + strand at 446.387 kb on + strand at 446.408 kb on + strand at 446.488 kb on - strand at 446.497 kb on + strand at 446.501 kb on - strand at 446.516 kb on - strand at 446.516 kb on - strand at 446.549 kb on - strand at 446.550 kb on + strand at 446.550 kb on + strand at 446.550 kb on + strand at 446.550 kb on + strand at 446.550 kb on + strand at 446.553 kb on - strand at 446.553 kb on - strand at 446.553 kb on - strand at 446.553 kb on - strand at 446.553 kb on - strand at 446.554 kb on + strand at 446.554 kb on + strand at 446.554 kb on + strand at 446.554 kb on + strand at 446.554 kb on + strand at 446.554 kb on + strand at 446.555 kb on - strand at 446.555 kb on - strand at 446.555 kb on - strand at 446.556 kb on + strand at 446.556 kb on + strand at 446.556 kb on + strand at 446.556 kb on + strand at 446.556 kb on + strand at 446.556 kb on + strand at 446.556 kb on + strand at 446.556 kb on + strand at 446.571 kb on - strand at 446.619 kb on - strand at 446.620 kb on + strand at 446.620 kb on + strand at 446.620 kb on + strand at 446.620 kb on + strand at 446.620 kb on + strand at 446.662 kb on - strand at 446.695 kb on - strand, within MMJJ_RS02355 at 446.696 kb on + strand, within MMJJ_RS02355 at 446.696 kb on + strand, within MMJJ_RS02355 at 446.696 kb on + strand, within MMJJ_RS02355 at 446.697 kb on - strand, within MMJJ_RS02355 at 446.697 kb on - strand, within MMJJ_RS02355 at 446.697 kb on - strand, within MMJJ_RS02355 at 446.697 kb on - strand, within MMJJ_RS02355 at 446.698 kb on + strand, within MMJJ_RS02355 at 446.705 kb on - strand, within MMJJ_RS02355 at 446.708 kb on - strand, within MMJJ_RS02355 at 446.709 kb on + strand, within MMJJ_RS02355 at 446.750 kb on - strand, within MMJJ_RS02355 at 446.751 kb on + strand, within MMJJ_RS02355 at 446.763 kb on - strand, within MMJJ_RS02355 at 446.764 kb on + strand, within MMJJ_RS02355 at 446.764 kb on + strand, within MMJJ_RS02355 at 446.764 kb on + strand, within MMJJ_RS02355 at 446.764 kb on + strand, within MMJJ_RS02355 at 446.771 kb on - strand, within MMJJ_RS02355 at 446.771 kb on - strand, within MMJJ_RS02355 at 446.772 kb on + strand, within MMJJ_RS02355 at 446.795 kb on + strand, within MMJJ_RS02355 at 446.815 kb on + strand, within MMJJ_RS02355 at 446.815 kb on + strand, within MMJJ_RS02355 at 446.823 kb on + strand, within MMJJ_RS02355 at 446.887 kb on + strand, within MMJJ_RS02355 at 446.887 kb on + strand, within MMJJ_RS02355 at 446.920 kb on - strand, within MMJJ_RS02355 at 446.920 kb on - strand, within MMJJ_RS02355 at 446.988 kb on - strand, within MMJJ_RS02355 at 447.075 kb on - strand at 447.126 kb on - strand at 447.178 kb on - strand at 447.187 kb on - strand at 447.187 kb on - strand at 447.189 kb on - strand at 447.190 kb on + strand at 447.227 kb on + strand at 447.301 kb on - strand at 447.315 kb on + strand at 447.327 kb on + strand at 447.329 kb on - strand at 447.350 kb on - strand at 447.350 kb on - strand at 447.350 kb on - strand at 447.351 kb on + strand at 447.351 kb on + strand at 447.351 kb on + strand at 447.354 kb on - strand at 447.354 kb on - strand at 447.354 kb on - strand at 447.354 kb on - strand at 447.354 kb on - strand at 447.354 kb on - strand at 447.354 kb on - strand at 447.354 kb on - strand at 447.354 kb on - strand at 447.354 kb on - strand at 447.354 kb on - strand at 447.354 kb on - strand at 447.354 kb on - strand at 447.354 kb on - strand at 447.355 kb on + strand at 447.355 kb on + strand at 447.355 kb on + strand at 447.355 kb on + strand at 447.355 kb on + strand at 447.355 kb on + strand at 447.355 kb on + strand at 447.355 kb on + strand at 447.355 kb on + strand at 447.355 kb on + strand at 447.355 kb on + strand at 447.382 kb on - strand at 447.386 kb on - strand at 447.386 kb on - strand at 447.386 kb on - strand at 447.387 kb on + strand at 447.393 kb on + strand at 447.406 kb on + strand at 447.406 kb on + strand at 447.408 kb on + strand at 447.408 kb on + strand at 447.446 kb on - strand at 447.446 kb on - strand at 447.452 kb on - strand at 447.460 kb on + strand at 447.562 kb on + strand at 447.576 kb on + strand at 447.626 kb on + strand at 447.634 kb on - strand at 447.634 kb on - strand at 447.649 kb on - strand at 447.649 kb on - strand at 447.650 kb on + strand at 447.675 kb on - strand at 447.675 kb on - strand at 447.678 kb on - strand at 447.678 kb on - strand at 447.679 kb on + strand at 447.679 kb on + strand at 447.679 kb on + strand at 447.685 kb on + strand at 447.697 kb on - strand at 447.697 kb on - strand at 447.822 kb on + strand, within MMJJ_RS02360 at 447.834 kb on + strand, within MMJJ_RS02360 at 447.834 kb on + strand, within MMJJ_RS02360 at 447.878 kb on + strand, within MMJJ_RS02360 at 447.883 kb on + strand, within MMJJ_RS02360 at 447.898 kb on - strand, within MMJJ_RS02360 at 447.898 kb on - strand, within MMJJ_RS02360 at 447.960 kb on + strand, within MMJJ_RS02360 at 447.979 kb on - strand, within MMJJ_RS02360 at 447.993 kb on - strand, within MMJJ_RS02360 at 448.065 kb on - strand, within MMJJ_RS02360
Per-strain Table
Position Strand Gene LocusTag Fraction Formate pooled triplicate planktonic cells remove 445,634 - MMJJ_RS02350 0.52 -0.2 445,665 - MMJJ_RS02350 0.54 +0.5 445,665 - MMJJ_RS02350 0.54 +0.2 445,832 - MMJJ_RS02350 0.67 +0.8 445,833 + MMJJ_RS02350 0.67 +0.0 445,914 + MMJJ_RS02350 0.73 -0.2 445,935 - MMJJ_RS02350 0.75 -0.2 445,953 + MMJJ_RS02350 0.76 -0.1 445,989 - MMJJ_RS02350 0.79 +0.7 445,997 - MMJJ_RS02350 0.80 +0.9 446,001 - MMJJ_RS02350 0.80 -0.1 446,002 + MMJJ_RS02350 0.80 -0.1 446,005 - MMJJ_RS02350 0.80 -0.2 446,034 - MMJJ_RS02350 0.83 +0.1 446,035 + MMJJ_RS02350 0.83 +0.1 446,035 + MMJJ_RS02350 0.83 -0.1 446,041 - MMJJ_RS02350 0.83 +0.5 446,042 + MMJJ_RS02350 0.83 +1.1 446,044 + MMJJ_RS02350 0.83 -0.4 446,048 + MMJJ_RS02350 0.84 -0.0 446,048 + MMJJ_RS02350 0.84 -1.0 446,062 - MMJJ_RS02350 0.85 -0.1 446,063 + MMJJ_RS02350 0.85 +0.5 446,086 + MMJJ_RS02350 0.87 +0.6 446,098 + MMJJ_RS02350 0.88 -0.2 446,115 - MMJJ_RS02350 0.89 +0.3 446,115 - MMJJ_RS02350 0.89 +0.3 446,116 + MMJJ_RS02350 0.89 +1.2 446,119 - MMJJ_RS02350 0.89 -0.2 446,120 + MMJJ_RS02350 0.89 -0.8 446,120 + MMJJ_RS02350 0.89 -0.1 446,120 + MMJJ_RS02350 0.89 -0.0 446,144 - +0.4 446,144 - -0.4 446,145 + -0.8 446,145 + +0.1 446,145 + -0.2 446,145 + -0.1 446,145 + +0.0 446,145 + +0.0 446,145 + -1.0 446,147 + +2.0 446,151 - +1.2 446,151 - -0.6 446,152 + +0.5 446,152 + +0.8 446,152 + -0.1 446,152 + +1.1 446,152 + -0.3 446,196 - +0.6 446,196 - +0.1 446,197 + -0.1 446,197 + +0.5 446,237 - -0.1 446,237 - +0.9 446,238 + +0.0 446,265 - +0.6 446,275 - +0.1 446,302 - -0.1 446,302 - +0.2 446,306 - +0.6 446,326 + +0.2 446,387 + -0.1 446,408 + -0.0 446,488 - +0.8 446,497 + +0.4 446,501 - -1.3 446,516 - +0.6 446,516 - -0.3 446,549 - +0.2 446,550 + -0.3 446,550 + +0.1 446,550 + +0.2 446,550 + +0.3 446,550 + -0.1 446,553 - +1.2 446,553 - +0.1 446,553 - -0.6 446,553 - -1.1 446,553 - +2.0 446,554 + +0.5 446,554 + +0.8 446,554 + +0.5 446,554 + -0.9 446,554 + +0.8 446,554 + +1.9 446,555 - -0.2 446,555 - -0.3 446,555 - +0.4 446,556 + +0.2 446,556 + +0.4 446,556 + +1.1 446,556 + +0.8 446,556 + +0.5 446,556 + +0.4 446,556 + -2.4 446,556 + +1.6 446,571 - -0.4 446,619 - -0.0 446,620 + +0.3 446,620 + +0.3 446,620 + +0.6 446,620 + +0.2 446,620 + +0.2 446,662 - +0.6 446,695 - MMJJ_RS02355 0.16 -0.1 446,696 + MMJJ_RS02355 0.16 +0.8 446,696 + MMJJ_RS02355 0.16 +0.1 446,696 + MMJJ_RS02355 0.16 +0.6 446,697 - MMJJ_RS02355 0.16 -0.2 446,697 - MMJJ_RS02355 0.16 +0.3 446,697 - MMJJ_RS02355 0.16 +0.0 446,697 - MMJJ_RS02355 0.16 -0.3 446,698 + MMJJ_RS02355 0.16 -0.6 446,705 - MMJJ_RS02355 0.18 +0.2 446,708 - MMJJ_RS02355 0.18 -0.1 446,709 + MMJJ_RS02355 0.19 +0.2 446,750 - MMJJ_RS02355 0.27 -0.4 446,751 + MMJJ_RS02355 0.27 +0.8 446,763 - MMJJ_RS02355 0.30 -0.1 446,764 + MMJJ_RS02355 0.30 +0.1 446,764 + MMJJ_RS02355 0.30 +0.9 446,764 + MMJJ_RS02355 0.30 +0.5 446,764 + MMJJ_RS02355 0.30 +0.8 446,771 - MMJJ_RS02355 0.32 +0.0 446,771 - MMJJ_RS02355 0.32 -0.1 446,772 + MMJJ_RS02355 0.32 +0.6 446,795 + MMJJ_RS02355 0.37 +2.2 446,815 + MMJJ_RS02355 0.41 +0.5 446,815 + MMJJ_RS02355 0.41 +1.7 446,823 + MMJJ_RS02355 0.43 -0.2 446,887 + MMJJ_RS02355 0.56 -0.4 446,887 + MMJJ_RS02355 0.56 +1.2 446,920 - MMJJ_RS02355 0.63 -0.3 446,920 - MMJJ_RS02355 0.63 +0.9 446,988 - MMJJ_RS02355 0.77 -0.1 447,075 - -0.6 447,126 - -0.8 447,178 - -0.6 447,187 - +2.2 447,187 - -0.1 447,189 - +0.0 447,190 + +0.3 447,227 + +0.6 447,301 - +0.4 447,315 + +0.7 447,327 + +0.0 447,329 - -0.4 447,350 - +0.0 447,350 - -0.2 447,350 - -0.6 447,351 + +0.0 447,351 + -1.1 447,351 + +0.5 447,354 - +0.5 447,354 - -1.4 447,354 - -0.4 447,354 - -0.2 447,354 - +1.7 447,354 - +2.5 447,354 - -0.1 447,354 - -0.3 447,354 - +0.2 447,354 - +0.5 447,354 - +0.3 447,354 - -0.4 447,354 - +0.1 447,354 - -0.2 447,355 + -0.3 447,355 + -0.0 447,355 + +0.5 447,355 + -0.1 447,355 + -0.0 447,355 + +0.2 447,355 + -0.7 447,355 + +3.2 447,355 + +0.1 447,355 + -0.4 447,355 + +1.2 447,382 - +0.2 447,386 - -0.4 447,386 - -0.4 447,386 - -0.4 447,387 + +0.2 447,393 + -1.5 447,406 + +0.2 447,406 + -0.5 447,408 + +0.2 447,408 + +0.1 447,446 - -1.0 447,446 - -0.1 447,452 - +0.2 447,460 + +1.0 447,562 + -0.3 447,576 + -0.4 447,626 + -0.4 447,634 - -0.1 447,634 - -0.3 447,649 - -0.3 447,649 - -1.2 447,650 + +0.3 447,675 - +0.6 447,675 - +0.3 447,678 - +0.2 447,678 - -0.4 447,679 + +0.5 447,679 + -0.0 447,679 + -0.3 447,685 + +0.1 447,697 - -0.0 447,697 - -0.3 447,822 + MMJJ_RS02360 0.23 -0.8 447,834 + MMJJ_RS02360 0.25 +0.0 447,834 + MMJJ_RS02360 0.25 -0.3 447,878 + MMJJ_RS02360 0.34 -0.3 447,883 + MMJJ_RS02360 0.35 -0.1 447,898 - MMJJ_RS02360 0.39 +0.2 447,898 - MMJJ_RS02360 0.39 -0.1 447,960 + MMJJ_RS02360 0.51 +0.4 447,979 - MMJJ_RS02360 0.55 +0.1 447,993 - MMJJ_RS02360 0.58 -0.1 448,065 - MMJJ_RS02360 0.73 +0.2
Or see this region's nucleotide sequence