Experiment: Formate pooled triplicate planktonic cells
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02065 and MMJJ_RS02070 are separated by 150 nucleotides MMJJ_RS02070 and MMJJ_RS02075 are separated by 22 nucleotides MMJJ_RS02075 and MMJJ_RS02080 are separated by 20 nucleotides
MMJJ_RS02065: MMJJ_RS02065 - S-layer protein, at 392,768 to 394,354
_RS02065
MMJJ_RS02070: MMJJ_RS02070 - XRE family transcriptional regulator, at 394,505 to 395,083
_RS02070
MMJJ_RS02075: MMJJ_RS02075 - acyl-CoA thioesterase, at 395,106 to 395,513
_RS02075
MMJJ_RS02080: MMJJ_RS02080 - AMP-binding protein, at 395,534 to 397,183
_RS02080
Position (kb) 395
396 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 394.110 kb on - strand, within MMJJ_RS02065 at 394.129 kb on - strand, within MMJJ_RS02065 at 394.159 kb on + strand, within MMJJ_RS02065 at 394.188 kb on - strand, within MMJJ_RS02065 at 394.279 kb on - strand at 394.279 kb on - strand at 394.290 kb on - strand at 394.290 kb on - strand at 394.310 kb on - strand at 394.310 kb on - strand at 394.311 kb on + strand at 394.330 kb on + strand at 394.333 kb on + strand at 394.348 kb on - strand at 394.349 kb on + strand at 394.353 kb on + strand at 394.389 kb on + strand at 394.394 kb on + strand at 394.439 kb on - strand at 394.443 kb on - strand at 394.443 kb on - strand at 394.443 kb on - strand at 394.443 kb on - strand at 394.443 kb on - strand at 394.455 kb on - strand at 394.455 kb on - strand at 394.464 kb on - strand at 394.591 kb on - strand, within MMJJ_RS02070 at 394.592 kb on + strand, within MMJJ_RS02070 at 394.592 kb on + strand, within MMJJ_RS02070 at 394.594 kb on - strand, within MMJJ_RS02070 at 394.594 kb on - strand, within MMJJ_RS02070 at 394.594 kb on - strand, within MMJJ_RS02070 at 394.595 kb on + strand, within MMJJ_RS02070 at 394.595 kb on + strand, within MMJJ_RS02070 at 394.595 kb on + strand, within MMJJ_RS02070 at 394.728 kb on - strand, within MMJJ_RS02070 at 394.753 kb on - strand, within MMJJ_RS02070 at 394.754 kb on + strand, within MMJJ_RS02070 at 394.798 kb on - strand, within MMJJ_RS02070 at 394.803 kb on - strand, within MMJJ_RS02070 at 394.811 kb on - strand, within MMJJ_RS02070 at 394.812 kb on + strand, within MMJJ_RS02070 at 394.837 kb on - strand, within MMJJ_RS02070 at 394.844 kb on + strand, within MMJJ_RS02070 at 394.923 kb on - strand, within MMJJ_RS02070 at 394.925 kb on - strand, within MMJJ_RS02070 at 394.925 kb on - strand, within MMJJ_RS02070 at 394.925 kb on - strand, within MMJJ_RS02070 at 394.925 kb on - strand, within MMJJ_RS02070 at 394.925 kb on - strand, within MMJJ_RS02070 at 394.926 kb on + strand, within MMJJ_RS02070 at 394.926 kb on + strand, within MMJJ_RS02070 at 394.929 kb on - strand, within MMJJ_RS02070 at 394.951 kb on - strand, within MMJJ_RS02070 at 394.951 kb on - strand, within MMJJ_RS02070 at 394.951 kb on - strand, within MMJJ_RS02070 at 394.951 kb on - strand, within MMJJ_RS02070 at 394.952 kb on + strand, within MMJJ_RS02070 at 394.955 kb on - strand, within MMJJ_RS02070 at 394.955 kb on - strand, within MMJJ_RS02070 at 394.955 kb on - strand, within MMJJ_RS02070 at 394.956 kb on + strand, within MMJJ_RS02070 at 394.956 kb on + strand, within MMJJ_RS02070 at 394.956 kb on + strand, within MMJJ_RS02070 at 394.956 kb on + strand, within MMJJ_RS02070 at 394.956 kb on + strand, within MMJJ_RS02070 at 394.970 kb on - strand, within MMJJ_RS02070 at 394.971 kb on + strand, within MMJJ_RS02070 at 394.978 kb on - strand, within MMJJ_RS02070 at 394.979 kb on + strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.995 kb on - strand, within MMJJ_RS02070 at 394.996 kb on + strand, within MMJJ_RS02070 at 394.996 kb on + strand, within MMJJ_RS02070 at 394.996 kb on + strand, within MMJJ_RS02070 at 394.996 kb on + strand, within MMJJ_RS02070 at 394.996 kb on + strand, within MMJJ_RS02070 at 394.996 kb on + strand, within MMJJ_RS02070 at 394.996 kb on + strand, within MMJJ_RS02070 at 394.997 kb on - strand, within MMJJ_RS02070 at 394.997 kb on - strand, within MMJJ_RS02070 at 394.997 kb on - strand, within MMJJ_RS02070 at 394.997 kb on - strand, within MMJJ_RS02070 at 394.997 kb on - strand, within MMJJ_RS02070 at 394.997 kb on - strand, within MMJJ_RS02070 at 394.997 kb on - strand, within MMJJ_RS02070 at 394.997 kb on - strand, within MMJJ_RS02070 at 394.997 kb on - strand, within MMJJ_RS02070 at 394.998 kb on + strand, within MMJJ_RS02070 at 394.998 kb on + strand, within MMJJ_RS02070 at 394.998 kb on + strand, within MMJJ_RS02070 at 394.998 kb on + strand, within MMJJ_RS02070 at 394.998 kb on + strand, within MMJJ_RS02070 at 395.000 kb on - strand, within MMJJ_RS02070 at 395.000 kb on - strand, within MMJJ_RS02070 at 395.000 kb on - strand, within MMJJ_RS02070 at 395.000 kb on - strand, within MMJJ_RS02070 at 395.000 kb on - strand, within MMJJ_RS02070 at 395.000 kb on - strand, within MMJJ_RS02070 at 395.001 kb on + strand, within MMJJ_RS02070 at 395.001 kb on + strand, within MMJJ_RS02070 at 395.001 kb on + strand, within MMJJ_RS02070 at 395.010 kb on - strand, within MMJJ_RS02070 at 395.011 kb on + strand, within MMJJ_RS02070 at 395.025 kb on - strand, within MMJJ_RS02070 at 395.025 kb on - strand, within MMJJ_RS02070 at 395.025 kb on - strand, within MMJJ_RS02070 at 395.025 kb on - strand, within MMJJ_RS02070 at 395.025 kb on - strand, within MMJJ_RS02070 at 395.025 kb on - strand, within MMJJ_RS02070 at 395.026 kb on + strand at 395.026 kb on + strand at 395.026 kb on + strand at 395.026 kb on + strand at 395.026 kb on + strand at 395.026 kb on + strand at 395.065 kb on + strand at 395.065 kb on + strand at 395.067 kb on - strand at 395.067 kb on - strand at 395.068 kb on + strand at 395.068 kb on + strand at 395.068 kb on + strand at 395.069 kb on - strand at 395.069 kb on - strand at 395.069 kb on - strand at 395.070 kb on + strand at 395.070 kb on + strand at 395.070 kb on + strand at 395.081 kb on - strand at 395.210 kb on + strand, within MMJJ_RS02075 at 395.239 kb on - strand, within MMJJ_RS02075 at 395.301 kb on - strand, within MMJJ_RS02075 at 395.301 kb on - strand, within MMJJ_RS02075 at 395.302 kb on + strand, within MMJJ_RS02075 at 395.302 kb on + strand, within MMJJ_RS02075 at 395.360 kb on - strand, within MMJJ_RS02075 at 395.361 kb on + strand, within MMJJ_RS02075 at 395.437 kb on - strand, within MMJJ_RS02075 at 395.438 kb on + strand, within MMJJ_RS02075 at 395.517 kb on - strand at 395.518 kb on + strand at 395.533 kb on - strand at 395.542 kb on - strand at 395.549 kb on + strand at 395.551 kb on - strand at 395.610 kb on - strand at 395.610 kb on - strand at 395.611 kb on + strand at 395.635 kb on - strand at 395.635 kb on - strand at 395.639 kb on - strand at 395.685 kb on - strand at 395.698 kb on - strand at 395.749 kb on - strand, within MMJJ_RS02080 at 395.807 kb on - strand, within MMJJ_RS02080 at 395.809 kb on - strand, within MMJJ_RS02080 at 395.809 kb on - strand, within MMJJ_RS02080 at 395.809 kb on - strand, within MMJJ_RS02080 at 395.809 kb on - strand, within MMJJ_RS02080 at 395.829 kb on + strand, within MMJJ_RS02080 at 395.829 kb on + strand, within MMJJ_RS02080 at 395.867 kb on + strand, within MMJJ_RS02080 at 395.887 kb on + strand, within MMJJ_RS02080 at 395.902 kb on + strand, within MMJJ_RS02080 at 395.902 kb on + strand, within MMJJ_RS02080 at 395.906 kb on - strand, within MMJJ_RS02080 at 395.949 kb on - strand, within MMJJ_RS02080 at 395.949 kb on - strand, within MMJJ_RS02080 at 395.987 kb on - strand, within MMJJ_RS02080 at 395.987 kb on - strand, within MMJJ_RS02080 at 395.988 kb on + strand, within MMJJ_RS02080 at 395.988 kb on + strand, within MMJJ_RS02080 at 395.988 kb on + strand, within MMJJ_RS02080 at 396.018 kb on + strand, within MMJJ_RS02080 at 396.018 kb on + strand, within MMJJ_RS02080 at 396.018 kb on + strand, within MMJJ_RS02080 at 396.018 kb on + strand, within MMJJ_RS02080 at 396.022 kb on - strand, within MMJJ_RS02080 at 396.023 kb on + strand, within MMJJ_RS02080 at 396.042 kb on - strand, within MMJJ_RS02080 at 396.042 kb on - strand, within MMJJ_RS02080 at 396.050 kb on - strand, within MMJJ_RS02080 at 396.105 kb on - strand, within MMJJ_RS02080 at 396.122 kb on + strand, within MMJJ_RS02080 at 396.160 kb on - strand, within MMJJ_RS02080 at 396.177 kb on - strand, within MMJJ_RS02080 at 396.177 kb on - strand, within MMJJ_RS02080 at 396.178 kb on + strand, within MMJJ_RS02080 at 396.181 kb on - strand, within MMJJ_RS02080 at 396.182 kb on + strand, within MMJJ_RS02080 at 396.182 kb on + strand, within MMJJ_RS02080 at 396.192 kb on + strand, within MMJJ_RS02080 at 396.291 kb on - strand, within MMJJ_RS02080 at 396.292 kb on + strand, within MMJJ_RS02080 at 396.313 kb on + strand, within MMJJ_RS02080 at 396.324 kb on - strand, within MMJJ_RS02080 at 396.343 kb on + strand, within MMJJ_RS02080 at 396.380 kb on - strand, within MMJJ_RS02080 at 396.391 kb on - strand, within MMJJ_RS02080 at 396.392 kb on + strand, within MMJJ_RS02080 at 396.401 kb on + strand, within MMJJ_RS02080 at 396.452 kb on + strand, within MMJJ_RS02080 at 396.464 kb on + strand, within MMJJ_RS02080
Per-strain Table
Position Strand Gene LocusTag Fraction Formate pooled triplicate planktonic cells remove 394,110 - MMJJ_RS02065 0.85 -2.1 394,129 - MMJJ_RS02065 0.86 -0.1 394,159 + MMJJ_RS02065 0.88 -0.7 394,188 - MMJJ_RS02065 0.89 +0.1 394,279 - -0.2 394,279 - -0.0 394,290 - -0.3 394,290 - -0.1 394,310 - -0.4 394,310 - +0.3 394,311 + -0.6 394,330 + -0.4 394,333 + -0.2 394,348 - +1.4 394,349 + +0.9 394,353 + +0.6 394,389 + +0.1 394,394 + -0.1 394,439 - +0.2 394,443 - -0.7 394,443 - +0.4 394,443 - -0.3 394,443 - -0.1 394,443 - -1.1 394,455 - +0.1 394,455 - -0.4 394,464 - +2.3 394,591 - MMJJ_RS02070 0.15 -0.2 394,592 + MMJJ_RS02070 0.15 +0.3 394,592 + MMJJ_RS02070 0.15 +1.0 394,594 - MMJJ_RS02070 0.15 -0.4 394,594 - MMJJ_RS02070 0.15 +1.7 394,594 - MMJJ_RS02070 0.15 -0.1 394,595 + MMJJ_RS02070 0.16 +0.7 394,595 + MMJJ_RS02070 0.16 +0.1 394,595 + MMJJ_RS02070 0.16 -2.4 394,728 - MMJJ_RS02070 0.39 -2.7 394,753 - MMJJ_RS02070 0.43 -0.4 394,754 + MMJJ_RS02070 0.43 +0.4 394,798 - MMJJ_RS02070 0.51 -1.5 394,803 - MMJJ_RS02070 0.51 -0.5 394,811 - MMJJ_RS02070 0.53 -0.2 394,812 + MMJJ_RS02070 0.53 -0.3 394,837 - MMJJ_RS02070 0.57 +0.2 394,844 + MMJJ_RS02070 0.59 +0.2 394,923 - MMJJ_RS02070 0.72 +0.0 394,925 - MMJJ_RS02070 0.73 -2.7 394,925 - MMJJ_RS02070 0.73 +0.1 394,925 - MMJJ_RS02070 0.73 -0.2 394,925 - MMJJ_RS02070 0.73 +0.3 394,925 - MMJJ_RS02070 0.73 -0.0 394,926 + MMJJ_RS02070 0.73 +0.3 394,926 + MMJJ_RS02070 0.73 +0.0 394,929 - MMJJ_RS02070 0.73 +0.4 394,951 - MMJJ_RS02070 0.77 +0.4 394,951 - MMJJ_RS02070 0.77 +0.7 394,951 - MMJJ_RS02070 0.77 -0.1 394,951 - MMJJ_RS02070 0.77 +1.2 394,952 + MMJJ_RS02070 0.77 +0.6 394,955 - MMJJ_RS02070 0.78 -0.1 394,955 - MMJJ_RS02070 0.78 -0.5 394,955 - MMJJ_RS02070 0.78 -0.1 394,956 + MMJJ_RS02070 0.78 +0.4 394,956 + MMJJ_RS02070 0.78 -1.3 394,956 + MMJJ_RS02070 0.78 -1.8 394,956 + MMJJ_RS02070 0.78 +0.0 394,956 + MMJJ_RS02070 0.78 +0.7 394,970 - MMJJ_RS02070 0.80 -0.6 394,971 + MMJJ_RS02070 0.80 -0.3 394,978 - MMJJ_RS02070 0.82 +0.2 394,979 + MMJJ_RS02070 0.82 -0.0 394,995 - MMJJ_RS02070 0.85 -0.2 394,995 - MMJJ_RS02070 0.85 -0.1 394,995 - MMJJ_RS02070 0.85 +1.1 394,995 - MMJJ_RS02070 0.85 +0.4 394,995 - MMJJ_RS02070 0.85 -0.3 394,995 - MMJJ_RS02070 0.85 -0.5 394,995 - MMJJ_RS02070 0.85 -0.0 394,995 - MMJJ_RS02070 0.85 -0.2 394,995 - MMJJ_RS02070 0.85 -0.5 394,995 - MMJJ_RS02070 0.85 -0.6 394,995 - MMJJ_RS02070 0.85 -0.0 394,995 - MMJJ_RS02070 0.85 -0.4 394,995 - MMJJ_RS02070 0.85 -0.1 394,995 - MMJJ_RS02070 0.85 +0.2 394,995 - MMJJ_RS02070 0.85 -1.2 394,996 + MMJJ_RS02070 0.85 +0.3 394,996 + MMJJ_RS02070 0.85 -0.2 394,996 + MMJJ_RS02070 0.85 +4.0 394,996 + MMJJ_RS02070 0.85 -0.6 394,996 + MMJJ_RS02070 0.85 +0.0 394,996 + MMJJ_RS02070 0.85 -0.6 394,996 + MMJJ_RS02070 0.85 +1.0 394,997 - MMJJ_RS02070 0.85 +0.9 394,997 - MMJJ_RS02070 0.85 +0.5 394,997 - MMJJ_RS02070 0.85 +0.2 394,997 - MMJJ_RS02070 0.85 -0.1 394,997 - MMJJ_RS02070 0.85 +0.3 394,997 - MMJJ_RS02070 0.85 -0.3 394,997 - MMJJ_RS02070 0.85 +2.2 394,997 - MMJJ_RS02070 0.85 -0.7 394,997 - MMJJ_RS02070 0.85 -0.4 394,998 + MMJJ_RS02070 0.85 -0.1 394,998 + MMJJ_RS02070 0.85 +0.3 394,998 + MMJJ_RS02070 0.85 -0.4 394,998 + MMJJ_RS02070 0.85 +0.9 394,998 + MMJJ_RS02070 0.85 -0.3 395,000 - MMJJ_RS02070 0.85 -1.1 395,000 - MMJJ_RS02070 0.85 +0.2 395,000 - MMJJ_RS02070 0.85 -0.4 395,000 - MMJJ_RS02070 0.85 -0.2 395,000 - MMJJ_RS02070 0.85 -0.5 395,000 - MMJJ_RS02070 0.85 -0.3 395,001 + MMJJ_RS02070 0.86 +0.3 395,001 + MMJJ_RS02070 0.86 +0.2 395,001 + MMJJ_RS02070 0.86 -0.0 395,010 - MMJJ_RS02070 0.87 +0.2 395,011 + MMJJ_RS02070 0.87 -0.1 395,025 - MMJJ_RS02070 0.90 -0.8 395,025 - MMJJ_RS02070 0.90 +1.1 395,025 - MMJJ_RS02070 0.90 +0.5 395,025 - MMJJ_RS02070 0.90 -0.9 395,025 - MMJJ_RS02070 0.90 +0.3 395,025 - MMJJ_RS02070 0.90 +0.3 395,026 + -1.9 395,026 + -0.4 395,026 + +0.0 395,026 + +0.5 395,026 + +0.5 395,026 + +0.1 395,065 + -0.7 395,065 + +0.8 395,067 - -0.5 395,067 - -0.5 395,068 + +0.2 395,068 + +0.9 395,068 + +0.0 395,069 - -0.3 395,069 - -0.1 395,069 - -0.4 395,070 + -0.4 395,070 + -0.3 395,070 + -0.4 395,081 - +0.2 395,210 + MMJJ_RS02075 0.25 +0.0 395,239 - MMJJ_RS02075 0.33 +0.2 395,301 - MMJJ_RS02075 0.48 -0.6 395,301 - MMJJ_RS02075 0.48 +0.3 395,302 + MMJJ_RS02075 0.48 +0.3 395,302 + MMJJ_RS02075 0.48 -0.1 395,360 - MMJJ_RS02075 0.62 +0.8 395,361 + MMJJ_RS02075 0.62 +0.4 395,437 - MMJJ_RS02075 0.81 -1.5 395,438 + MMJJ_RS02075 0.81 +1.9 395,517 - -0.3 395,518 + -0.2 395,533 - -0.5 395,542 - +0.2 395,549 + +0.5 395,551 - +0.7 395,610 - +0.7 395,610 - +0.6 395,611 + -0.6 395,635 - -0.1 395,635 - +0.2 395,639 - +1.2 395,685 - +0.4 395,698 - +0.0 395,749 - MMJJ_RS02080 0.13 +0.0 395,807 - MMJJ_RS02080 0.17 -0.1 395,809 - MMJJ_RS02080 0.17 -0.6 395,809 - MMJJ_RS02080 0.17 -0.9 395,809 - MMJJ_RS02080 0.17 -0.2 395,809 - MMJJ_RS02080 0.17 +0.9 395,829 + MMJJ_RS02080 0.18 +2.0 395,829 + MMJJ_RS02080 0.18 +0.3 395,867 + MMJJ_RS02080 0.20 -0.0 395,887 + MMJJ_RS02080 0.21 +1.0 395,902 + MMJJ_RS02080 0.22 +0.5 395,902 + MMJJ_RS02080 0.22 -0.2 395,906 - MMJJ_RS02080 0.23 +0.6 395,949 - MMJJ_RS02080 0.25 -0.2 395,949 - MMJJ_RS02080 0.25 +0.3 395,987 - MMJJ_RS02080 0.27 -0.4 395,987 - MMJJ_RS02080 0.27 -0.2 395,988 + MMJJ_RS02080 0.28 -0.1 395,988 + MMJJ_RS02080 0.28 +0.1 395,988 + MMJJ_RS02080 0.28 +0.0 396,018 + MMJJ_RS02080 0.29 +0.2 396,018 + MMJJ_RS02080 0.29 -0.3 396,018 + MMJJ_RS02080 0.29 +0.1 396,018 + MMJJ_RS02080 0.29 +0.0 396,022 - MMJJ_RS02080 0.30 +0.6 396,023 + MMJJ_RS02080 0.30 +1.1 396,042 - MMJJ_RS02080 0.31 -1.1 396,042 - MMJJ_RS02080 0.31 +0.6 396,050 - MMJJ_RS02080 0.31 +0.1 396,105 - MMJJ_RS02080 0.35 -0.2 396,122 + MMJJ_RS02080 0.36 -0.2 396,160 - MMJJ_RS02080 0.38 -0.2 396,177 - MMJJ_RS02080 0.39 -0.5 396,177 - MMJJ_RS02080 0.39 +0.4 396,178 + MMJJ_RS02080 0.39 -0.5 396,181 - MMJJ_RS02080 0.39 -0.6 396,182 + MMJJ_RS02080 0.39 -1.1 396,182 + MMJJ_RS02080 0.39 +1.2 396,192 + MMJJ_RS02080 0.40 +0.4 396,291 - MMJJ_RS02080 0.46 +0.1 396,292 + MMJJ_RS02080 0.46 +1.1 396,313 + MMJJ_RS02080 0.47 +0.5 396,324 - MMJJ_RS02080 0.48 -0.7 396,343 + MMJJ_RS02080 0.49 -0.1 396,380 - MMJJ_RS02080 0.51 -0.4 396,391 - MMJJ_RS02080 0.52 -0.1 396,392 + MMJJ_RS02080 0.52 +0.4 396,401 + MMJJ_RS02080 0.53 +0.2 396,452 + MMJJ_RS02080 0.56 +0.1 396,464 + MMJJ_RS02080 0.56 -0.2
Or see this region's nucleotide sequence