Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01505

Experiment: Formate pooled triplicate planktonic cells

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01500 and MMJJ_RS01505 are separated by 122 nucleotidesMMJJ_RS01505 and MMJJ_RS01510 are separated by 95 nucleotides MMJJ_RS01500: MMJJ_RS01500 - transcriptional regulator, at 294,027 to 295,007 _RS01500 MMJJ_RS01505: MMJJ_RS01505 - DUF2124 domain-containing protein, at 295,130 to 295,606 _RS01505 MMJJ_RS01510: MMJJ_RS01510 - ATP-binding protein, at 295,702 to 297,099 _RS01510 Position (kb) 295 296Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 294.214 kb on + strand, within MMJJ_RS01500at 294.214 kb on + strand, within MMJJ_RS01500at 294.239 kb on - strand, within MMJJ_RS01500at 294.245 kb on - strand, within MMJJ_RS01500at 294.254 kb on - strand, within MMJJ_RS01500at 294.328 kb on + strand, within MMJJ_RS01500at 294.433 kb on + strand, within MMJJ_RS01500at 294.453 kb on - strand, within MMJJ_RS01500at 294.487 kb on - strand, within MMJJ_RS01500at 294.542 kb on + strand, within MMJJ_RS01500at 294.545 kb on - strand, within MMJJ_RS01500at 294.546 kb on + strand, within MMJJ_RS01500at 294.547 kb on - strand, within MMJJ_RS01500at 294.547 kb on - strand, within MMJJ_RS01500at 294.573 kb on - strand, within MMJJ_RS01500at 294.713 kb on - strand, within MMJJ_RS01500at 294.748 kb on + strand, within MMJJ_RS01500at 294.889 kb on + strand, within MMJJ_RS01500at 294.908 kb on - strand, within MMJJ_RS01500at 294.994 kb on + strandat 295.007 kb on - strandat 295.014 kb on - strandat 295.028 kb on - strandat 295.038 kb on + strandat 295.050 kb on + strandat 295.067 kb on - strandat 295.090 kb on + strandat 295.091 kb on - strandat 295.093 kb on - strandat 295.093 kb on - strandat 295.093 kb on - strandat 295.093 kb on - strandat 295.093 kb on - strandat 295.094 kb on + strandat 295.096 kb on - strandat 295.096 kb on - strandat 295.096 kb on - strandat 295.096 kb on - strandat 295.096 kb on - strandat 295.096 kb on - strandat 295.097 kb on + strandat 295.097 kb on + strandat 295.097 kb on + strandat 295.097 kb on + strandat 295.100 kb on + strandat 295.100 kb on + strandat 295.108 kb on + strandat 295.282 kb on - strand, within MMJJ_RS01505at 295.295 kb on - strand, within MMJJ_RS01505at 295.295 kb on - strand, within MMJJ_RS01505at 295.317 kb on - strand, within MMJJ_RS01505at 295.366 kb on - strand, within MMJJ_RS01505at 295.367 kb on + strand, within MMJJ_RS01505at 295.378 kb on - strand, within MMJJ_RS01505at 295.378 kb on - strand, within MMJJ_RS01505at 295.379 kb on + strand, within MMJJ_RS01505at 295.391 kb on + strand, within MMJJ_RS01505at 295.444 kb on - strand, within MMJJ_RS01505at 295.563 kb on - strandat 295.566 kb on - strandat 295.567 kb on + strandat 295.609 kb on - strandat 295.609 kb on - strandat 295.610 kb on + strandat 295.610 kb on + strandat 295.610 kb on + strandat 295.610 kb on + strandat 295.637 kb on + strandat 295.655 kb on - strandat 295.661 kb on + strandat 295.667 kb on - strandat 295.667 kb on - strandat 295.668 kb on + strandat 295.668 kb on + strandat 295.671 kb on - strandat 295.671 kb on - strandat 295.672 kb on + strandat 295.679 kb on - strandat 295.700 kb on - strandat 295.701 kb on + strandat 295.701 kb on + strandat 295.706 kb on - strandat 295.706 kb on - strandat 295.707 kb on + strandat 295.707 kb on + strandat 295.788 kb on - strandat 295.789 kb on + strandat 295.789 kb on + strandat 295.793 kb on - strandat 295.794 kb on + strandat 295.796 kb on + strandat 295.797 kb on - strandat 295.820 kb on - strandat 295.839 kb on - strandat 295.839 kb on - strandat 295.841 kb on - strandat 295.845 kb on + strand, within MMJJ_RS01510at 295.863 kb on - strand, within MMJJ_RS01510at 295.920 kb on - strand, within MMJJ_RS01510at 295.923 kb on + strand, within MMJJ_RS01510at 295.954 kb on + strand, within MMJJ_RS01510at 295.966 kb on - strand, within MMJJ_RS01510at 295.966 kb on - strand, within MMJJ_RS01510at 295.967 kb on + strand, within MMJJ_RS01510at 295.967 kb on + strand, within MMJJ_RS01510at 295.967 kb on + strand, within MMJJ_RS01510at 295.986 kb on + strand, within MMJJ_RS01510at 296.001 kb on + strand, within MMJJ_RS01510at 296.069 kb on - strand, within MMJJ_RS01510at 296.096 kb on - strand, within MMJJ_RS01510at 296.097 kb on + strand, within MMJJ_RS01510at 296.097 kb on + strand, within MMJJ_RS01510at 296.122 kb on + strand, within MMJJ_RS01510at 296.217 kb on - strandat 296.248 kb on + strand, within MMJJ_RS01510at 296.265 kb on - strandat 296.265 kb on - strand, within MMJJ_RS01510at 296.304 kb on - strand, within MMJJ_RS01510at 296.337 kb on - strand, within MMJJ_RS01510at 296.378 kb on + strand, within MMJJ_RS01510at 296.384 kb on + strand, within MMJJ_RS01510at 296.409 kb on - strand, within MMJJ_RS01510at 296.443 kb on + strand, within MMJJ_RS01510at 296.451 kb on + strand, within MMJJ_RS01510at 296.463 kb on - strand, within MMJJ_RS01510at 296.501 kb on - strand, within MMJJ_RS01510at 296.501 kb on - strand, within MMJJ_RS01510at 296.586 kb on + strand, within MMJJ_RS01510

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate pooled triplicate planktonic cells
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294,214 + MMJJ_RS01500 0.19 -2.4
294,214 + MMJJ_RS01500 0.19 -0.8
294,239 - MMJJ_RS01500 0.22 -0.8
294,245 - MMJJ_RS01500 0.22 -0.5
294,254 - MMJJ_RS01500 0.23 -0.4
294,328 + MMJJ_RS01500 0.31 -0.3
294,433 + MMJJ_RS01500 0.41 -0.4
294,453 - MMJJ_RS01500 0.43 -1.2
294,487 - MMJJ_RS01500 0.47 -1.6
294,542 + MMJJ_RS01500 0.52 +0.3
294,545 - MMJJ_RS01500 0.53 -2.9
294,546 + MMJJ_RS01500 0.53 -2.4
294,547 - MMJJ_RS01500 0.53 -2.4
294,547 - MMJJ_RS01500 0.53 -2.7
294,573 - MMJJ_RS01500 0.56 -2.0
294,713 - MMJJ_RS01500 0.70 -3.9
294,748 + MMJJ_RS01500 0.73 -3.0
294,889 + MMJJ_RS01500 0.88 -1.8
294,908 - MMJJ_RS01500 0.90 -2.4
294,994 + -0.2
295,007 - -2.0
295,014 - +1.7
295,028 - +0.0
295,038 + -1.4
295,050 + -3.1
295,067 - -0.4
295,090 + -0.9
295,091 - -0.5
295,093 - +0.1
295,093 - +0.3
295,093 - +1.1
295,093 - +0.0
295,093 - -0.2
295,094 + -0.5
295,096 - -0.4
295,096 - +0.5
295,096 - +0.4
295,096 - -0.1
295,096 - +0.1
295,096 - -0.6
295,097 + -0.3
295,097 + +0.2
295,097 + -0.3
295,097 + -0.3
295,100 + +0.4
295,100 + -1.0
295,108 + +0.7
295,282 - MMJJ_RS01505 0.32 -0.1
295,295 - MMJJ_RS01505 0.35 +0.3
295,295 - MMJJ_RS01505 0.35 +0.2
295,317 - MMJJ_RS01505 0.39 +0.7
295,366 - MMJJ_RS01505 0.49 +0.5
295,367 + MMJJ_RS01505 0.50 -0.5
295,378 - MMJJ_RS01505 0.52 +0.1
295,378 - MMJJ_RS01505 0.52 +0.6
295,379 + MMJJ_RS01505 0.52 -0.2
295,391 + MMJJ_RS01505 0.55 -0.0
295,444 - MMJJ_RS01505 0.66 -0.0
295,563 - +1.9
295,566 - -1.0
295,567 + -2.0
295,609 - -0.3
295,609 - -0.2
295,610 + +0.2
295,610 + -1.1
295,610 + -0.1
295,610 + -0.1
295,637 + +0.1
295,655 - -0.2
295,661 + -0.1
295,667 - -0.2
295,667 - +0.8
295,668 + -0.6
295,668 + +1.0
295,671 - +0.2
295,671 - -0.8
295,672 + +0.0
295,679 - +0.2
295,700 - +0.0
295,701 + +1.3
295,701 + -0.7
295,706 - -0.1
295,706 - +3.1
295,707 + +0.4
295,707 + -0.1
295,788 - -0.4
295,789 + +0.4
295,789 + +0.1
295,793 - +0.2
295,794 + -0.7
295,796 + -0.6
295,797 - +1.1
295,820 - +0.1
295,839 - -0.2
295,839 - -0.4
295,841 - +0.1
295,845 + MMJJ_RS01510 0.10 -0.3
295,863 - MMJJ_RS01510 0.12 -0.8
295,920 - MMJJ_RS01510 0.16 +0.5
295,923 + MMJJ_RS01510 0.16 -0.1
295,954 + MMJJ_RS01510 0.18 +0.8
295,966 - MMJJ_RS01510 0.19 +1.7
295,966 - MMJJ_RS01510 0.19 +0.6
295,967 + MMJJ_RS01510 0.19 -0.1
295,967 + MMJJ_RS01510 0.19 +0.1
295,967 + MMJJ_RS01510 0.19 -0.4
295,986 + MMJJ_RS01510 0.20 +0.6
296,001 + MMJJ_RS01510 0.21 -0.4
296,069 - MMJJ_RS01510 0.26 +0.3
296,096 - MMJJ_RS01510 0.28 -0.0
296,097 + MMJJ_RS01510 0.28 +0.3
296,097 + MMJJ_RS01510 0.28 +0.0
296,122 + MMJJ_RS01510 0.30 +2.7
296,217 - -0.1
296,248 + MMJJ_RS01510 0.39 -0.3
296,265 - -1.1
296,265 - MMJJ_RS01510 0.40 +0.4
296,304 - MMJJ_RS01510 0.43 -0.5
296,337 - MMJJ_RS01510 0.45 +0.5
296,378 + MMJJ_RS01510 0.48 -0.4
296,384 + MMJJ_RS01510 0.49 +1.6
296,409 - MMJJ_RS01510 0.51 +0.1
296,443 + MMJJ_RS01510 0.53 -0.0
296,451 + MMJJ_RS01510 0.54 +0.0
296,463 - MMJJ_RS01510 0.54 +0.3
296,501 - MMJJ_RS01510 0.57 +0.2
296,501 - MMJJ_RS01510 0.57 -0.4
296,586 + MMJJ_RS01510 0.63 -0.1

Or see this region's nucleotide sequence