Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00715

Experiment: Formate pooled triplicate planktonic cells

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate pooled triplicate planktonic cells
138,272	-		MMJJ_RS00705	0.84	-0.3
138,403	+				+0.4
138,420	-				+0.5
138,420	-				-0.3
138,420	-				-0.7
138,420	-				-0.1
138,421	+				+0.3
138,421	+				+0.1
138,421	+				+0.8
138,421	+				+0.7
138,421	+				+2.7
138,421	+				-0.3
138,422	-				-0.1
138,422	-				+0.1
138,422	-				-0.2
138,422	-				+0.4
138,422	-				-0.1
138,423	+				-0.1
138,423	+				-0.2
138,423	+				-0.1
138,423	+				-0.7
138,424	-				-1.1
138,424	-				+0.3
138,424	-				+0.0
138,424	-				+1.2
138,424	-				+0.2
138,424	-				+1.8
138,425	+				-0.6
138,425	+				+0.1
138,425	+				-0.7
138,425	+				-0.2
138,425	+				+0.1
138,425	+				+1.6
138,425	+				+0.1
138,425	+				+0.5
138,425	+				+0.3
138,466	+				+0.1
138,493	+				+0.6
138,499	-				-0.7
138,499	-				-0.1
138,499	-				-0.9
138,499	-				+0.1
138,500	+				+0.9
138,500	+				+0.3
138,500	+				+0.6
138,504	-				+1.1
138,508	-				+0.2
138,511	-				-0.4
138,514	+				+0.3
138,652	-				-0.1
138,653	+				-0.3
138,653	+				-0.0
138,657	-				-0.0
138,657	-				+0.6
138,667	-				+0.1
138,672	-				-0.2
138,672	-				+0.3
138,672	-				-0.3
138,672	-				-0.0
138,672	-				+0.1
138,673	+				+1.7
138,673	+				+0.1
138,675	-				-0.0
138,681	-				+1.7
138,684	-				+0.7
138,684	-				-0.6
138,685	+				+0.5
138,693	-				-0.1
138,695	-				-0.9
138,695	-				+0.4
138,715	-				+2.2
138,715	-				-0.2
138,715	-				-0.1
138,716	+				-0.7
138,716	+				+2.9
138,716	+				-0.1
138,719	+				+0.6
138,719	+				+2.5
138,724	+				-0.3
138,795	-				-0.9
138,795	-				-0.3
138,795	-				-0.1
138,801	-		MMJJ_RS00710	0.10	+0.0
138,814	-		MMJJ_RS00710	0.13	+0.5
138,814	-		MMJJ_RS00710	0.13	-0.0
138,814	-		MMJJ_RS00710	0.13	-0.3
138,814	-		MMJJ_RS00710	0.13	+0.5
138,814	-		MMJJ_RS00710	0.13	-0.2
138,815	+		MMJJ_RS00710	0.13	-1.4
138,815	+		MMJJ_RS00710	0.13	-0.3
138,851	-		MMJJ_RS00710	0.21	+0.2
138,867	-				-1.4
138,867	-		MMJJ_RS00710	0.24	+0.3
138,868	+		MMJJ_RS00710	0.24	+0.3
138,868	+		MMJJ_RS00710	0.24	+0.2
138,868	+		MMJJ_RS00710	0.24	+0.1
138,873	-		MMJJ_RS00710	0.25	+0.2
138,874	+		MMJJ_RS00710	0.25	+0.1
138,874	+		MMJJ_RS00710	0.25	+0.2
138,874	+		MMJJ_RS00710	0.25	-0.5
138,874	+		MMJJ_RS00710	0.25	-0.7
138,919	-		MMJJ_RS00710	0.35	-0.5
138,947	-		MMJJ_RS00710	0.41	+0.0
138,947	-		MMJJ_RS00710	0.41	-0.2
138,952	+		MMJJ_RS00710	0.42	+0.1
138,982	-		MMJJ_RS00710	0.48	+0.2
138,982	-		MMJJ_RS00710	0.48	-0.1
138,983	+		MMJJ_RS00710	0.48	-0.1
139,001	+		MMJJ_RS00710	0.52	+0.1
139,078	+		MMJJ_RS00710	0.68	-0.5
139,082	+		MMJJ_RS00710	0.69	-0.1
139,096	+		MMJJ_RS00710	0.72	-0.6
139,151	+		MMJJ_RS00710	0.83	-0.3
139,151	+		MMJJ_RS00710	0.83	-0.2
139,152	-		MMJJ_RS00710	0.83	-1.1
139,153	+		MMJJ_RS00710	0.84	-0.5
139,153	+		MMJJ_RS00710	0.84	+0.6
139,156	-		MMJJ_RS00710	0.84	+0.0
139,157	+		MMJJ_RS00710	0.84	+1.2
139,172	-		MMJJ_RS00710	0.88	-0.6
139,172	-		MMJJ_RS00710	0.88	-0.4
139,172	-		MMJJ_RS00710	0.88	+0.3
139,172	-		MMJJ_RS00710	0.88	+0.0
139,173	+		MMJJ_RS00710	0.88	+0.5
139,173	+		MMJJ_RS00710	0.88	+0.2
139,186	+				-0.6
139,201	-				-0.5
139,201	-				-1.1
139,202	+				-0.3
139,203	-				+0.0
139,203	-				-0.2
139,203	-				-1.1
139,203	-				-1.1
139,203	-				-0.5
139,204	+				-0.1
139,204	+				+0.1
139,204	+				+0.1
139,204	+				-0.4
139,262	-				-0.8
139,262	-				-0.4
139,262	-				-0.3
139,263	+				-0.6
139,263	+				-0.3
139,263	+				-0.3
139,265	-				-0.2
139,265	-				-0.1
139,371	+		MMJJ_RS00715	0.18	+0.1
139,374	-		MMJJ_RS00715	0.18	+0.3
139,375	+		MMJJ_RS00715	0.18	+0.3
139,402	-		MMJJ_RS00715	0.23	-0.6
139,435	-		MMJJ_RS00715	0.28	+0.6
139,436	+		MMJJ_RS00715	0.28	-1.7
139,459	-		MMJJ_RS00715	0.32	+0.1
139,460	+		MMJJ_RS00715	0.32	-0.0
139,460	+		MMJJ_RS00715	0.32	-0.2
139,460	+		MMJJ_RS00715	0.32	+0.1
139,484	-		MMJJ_RS00715	0.36	-0.1
139,485	+		MMJJ_RS00715	0.36	+0.4
139,549	+		MMJJ_RS00715	0.46	+0.2
139,589	+		MMJJ_RS00715	0.52	-0.9
139,600	-		MMJJ_RS00715	0.54	+0.8
139,690	+		MMJJ_RS00715	0.68	-1.2
139,717	+		MMJJ_RS00715	0.73	+0.7
139,720	-		MMJJ_RS00715	0.73	-0.8
139,723	-		MMJJ_RS00715	0.74	-0.1
139,723	-		MMJJ_RS00715	0.74	+2.7
139,726	+		MMJJ_RS00715	0.74	+0.4
139,755	-		MMJJ_RS00715	0.79	-0.5
139,756	+		MMJJ_RS00715	0.79	-0.1
139,762	+		MMJJ_RS00715	0.80	+0.3
139,767	+		MMJJ_RS00715	0.81	+0.2
139,789	+		MMJJ_RS00715	0.84	+1.8
139,789	+		MMJJ_RS00715	0.84	+0.6
139,841	+				-0.2
139,849	-				+1.3
139,854	+				-0.8
139,856	-				+0.2
139,859	+				-0.8
139,879	-				-0.7
139,919	+				+0.3
139,924	+				-0.4
139,936	+				+0.4
139,942	-				-1.0
139,946	-				+0.1
139,946	-				+0.0
139,946	-				-1.1
139,962	+				+0.4
139,963	-				-0.3
139,963	-				-2.1
139,964	+				-0.9
139,964	+				-0.4
140,001	-				-0.1
140,001	-				+0.3
140,002	+				+0.1
140,002	+				-0.3
140,002	+				-0.2
140,022	-				+0.1
140,056	+		MMJJ_RS00720	0.10	-0.6
140,118	-		MMJJ_RS00720	0.15	+0.0
140,118	-		MMJJ_RS00720	0.15	-2.7
140,119	+		MMJJ_RS00720	0.15	-1.0
140,120	-		MMJJ_RS00720	0.15	-0.3
140,249	-		MMJJ_RS00720	0.26	-1.4
140,280	-		MMJJ_RS00720	0.28	-0.4
140,280	-		MMJJ_RS00720	0.28	-0.2
140,281	+		MMJJ_RS00720	0.28	-0.6
140,307	-		MMJJ_RS00720	0.30	-0.5
140,342	-		MMJJ_RS00720	0.33	-0.5
140,343	+		MMJJ_RS00720	0.33	-0.7
140,343	+		MMJJ_RS00720	0.33	-0.6
140,347	+		MMJJ_RS00720	0.33	-0.1
140,364	+		MMJJ_RS00720	0.35	-0.5
140,364	+		MMJJ_RS00720	0.35	-0.6
140,364	+		MMJJ_RS00720	0.35	-0.8
140,364	+		MMJJ_RS00720	0.35	-0.2
140,366	-		MMJJ_RS00720	0.35	-0.8
140,366	-		MMJJ_RS00720	0.35	-0.3
140,366	-		MMJJ_RS00720	0.35	-0.0
140,366	-		MMJJ_RS00720	0.35	-0.2
140,366	-		MMJJ_RS00720	0.35	-0.3
140,376	-		MMJJ_RS00720	0.36	-1.7
140,376	-		MMJJ_RS00720	0.36	-0.2
140,376	-		MMJJ_RS00720	0.36	-0.7
140,377	+		MMJJ_RS00720	0.36	+0.0
140,378	-		MMJJ_RS00720	0.36	+0.4
140,378	-		MMJJ_RS00720	0.36	+0.4
140,381	-		MMJJ_RS00720	0.36	-0.1
140,382	+		MMJJ_RS00720	0.36	+0.1
140,408	+		MMJJ_RS00720	0.38	+0.2
140,408	+		MMJJ_RS00720	0.38	-0.7
140,410	+		MMJJ_RS00720	0.38	+0.1
140,412	-		MMJJ_RS00720	0.39	+0.1
140,412	-		MMJJ_RS00720	0.39	+0.1
140,412	-		MMJJ_RS00720	0.39	-0.3
140,412	-		MMJJ_RS00720	0.39	-0.0
140,413	+		MMJJ_RS00720	0.39	-0.5
140,413	+		MMJJ_RS00720	0.39	+0.7
140,439	-		MMJJ_RS00720	0.41	-0.6
140,439	-		MMJJ_RS00720	0.41	+1.5
140,440	+		MMJJ_RS00720	0.41	+0.1
140,459	-		MMJJ_RS00720	0.42	-0.2
140,484	-		MMJJ_RS00720	0.44	+0.2
140,484	-		MMJJ_RS00720	0.44	+0.6
140,485	+		MMJJ_RS00720	0.44	-0.1
140,494	-		MMJJ_RS00720	0.45	+0.1
140,494	-		MMJJ_RS00720	0.45	+0.5
140,499	-		MMJJ_RS00720	0.45	-0.0
140,499	-		MMJJ_RS00720	0.45	-0.5
140,499	-		MMJJ_RS00720	0.45	-0.2
140,499	-		MMJJ_RS00720	0.45	+0.1
140,514	-		MMJJ_RS00720	0.47	+0.3
140,514	-		MMJJ_RS00720	0.47	+0.1
140,514	-		MMJJ_RS00720	0.47	-0.7
140,514	-		MMJJ_RS00720	0.47	-0.0
140,515	+		MMJJ_RS00720	0.47	-0.0
140,520	-		MMJJ_RS00720	0.47	+0.6
140,523	-		MMJJ_RS00720	0.47	+0.3
140,524	+		MMJJ_RS00720	0.47	+0.3
140,524	+		MMJJ_RS00720	0.47	+0.1
140,598	+		MMJJ_RS00720	0.53	-0.1
140,632	+		MMJJ_RS00720	0.56	+0.6
140,632	+		MMJJ_RS00720	0.56	+0.1
140,632	+		MMJJ_RS00720	0.56	-0.6
140,632	+		MMJJ_RS00720	0.56	-0.7
140,632	+		MMJJ_RS00720	0.56	-0.2
140,642	-		MMJJ_RS00720	0.57	-0.2
140,643	+		MMJJ_RS00720	0.57	+0.4
140,709	-		MMJJ_RS00720	0.62	-1.6
140,709	-		MMJJ_RS00720	0.62	+0.1
140,715	-		MMJJ_RS00720	0.63	-0.2
140,715	-		MMJJ_RS00720	0.63	-0.3
140,738	-		MMJJ_RS00720	0.65	+0.2
140,753	-		MMJJ_RS00720	0.66	+0.5
140,848	+		MMJJ_RS00720	0.73	-0.2
140,848	+		MMJJ_RS00720	0.73	+0.2
140,887	+		MMJJ_RS00720	0.76	+0.9