Experiment: Formate pooled triplicate planktonic cells
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00295 and MMJJ_RS00300 are separated by 15 nucleotides MMJJ_RS00300 and MMJJ_RS00305 are separated by 20 nucleotides MMJJ_RS00305 and MMJJ_RS00310 are separated by 70 nucleotides MMJJ_RS00310 and MMJJ_RS00315 are separated by 24 nucleotides
MMJJ_RS00295: MMJJ_RS00295 - response regulator, at 56,840 to 57,211
_RS00295
MMJJ_RS00300: MMJJ_RS00300 - chemotaxis protein CheC, at 57,227 to 57,916
_RS00300
MMJJ_RS00305: MMJJ_RS00305 - chemotaxis protein CheC, at 57,937 to 58,545
_RS00305
MMJJ_RS00310: MMJJ_RS00310 - protein-glutamate O-methyltransferase CheR, at 58,616 to 59,428
_RS00310
MMJJ_RS00315: MMJJ_RS00315 - methyl-accepting chemotaxis protein, at 59,453 to 60,856
_RS00315
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 57.015 kb on - strand, within MMJJ_RS00295 at 57.015 kb on - strand, within MMJJ_RS00295 at 57.081 kb on - strand, within MMJJ_RS00295 at 57.081 kb on - strand, within MMJJ_RS00295 at 57.081 kb on - strand, within MMJJ_RS00295 at 57.082 kb on + strand, within MMJJ_RS00295 at 57.084 kb on - strand, within MMJJ_RS00295 at 57.084 kb on - strand, within MMJJ_RS00295 at 57.084 kb on - strand, within MMJJ_RS00295 at 57.084 kb on - strand, within MMJJ_RS00295 at 57.084 kb on - strand, within MMJJ_RS00295 at 57.084 kb on - strand, within MMJJ_RS00295 at 57.084 kb on - strand, within MMJJ_RS00295 at 57.085 kb on + strand, within MMJJ_RS00295 at 57.092 kb on + strand, within MMJJ_RS00295 at 57.092 kb on + strand, within MMJJ_RS00295 at 57.092 kb on + strand, within MMJJ_RS00295 at 57.099 kb on - strand, within MMJJ_RS00295 at 57.130 kb on + strand, within MMJJ_RS00295 at 57.130 kb on + strand, within MMJJ_RS00295 at 57.149 kb on - strand, within MMJJ_RS00295 at 57.149 kb on - strand, within MMJJ_RS00295 at 57.149 kb on - strand, within MMJJ_RS00295 at 57.150 kb on + strand, within MMJJ_RS00295 at 57.150 kb on + strand, within MMJJ_RS00295 at 57.151 kb on - strand, within MMJJ_RS00295 at 57.152 kb on + strand, within MMJJ_RS00295 at 57.152 kb on + strand, within MMJJ_RS00295 at 57.156 kb on - strand, within MMJJ_RS00295 at 57.156 kb on - strand, within MMJJ_RS00295 at 57.156 kb on - strand, within MMJJ_RS00295 at 57.156 kb on - strand, within MMJJ_RS00295 at 57.157 kb on + strand, within MMJJ_RS00295 at 57.223 kb on - strand at 57.224 kb on + strand at 57.314 kb on + strand, within MMJJ_RS00300 at 57.334 kb on + strand, within MMJJ_RS00300 at 57.352 kb on + strand, within MMJJ_RS00300 at 57.432 kb on - strand, within MMJJ_RS00300 at 57.469 kb on + strand, within MMJJ_RS00300 at 57.472 kb on - strand, within MMJJ_RS00300 at 57.473 kb on + strand, within MMJJ_RS00300 at 57.501 kb on - strand, within MMJJ_RS00300 at 57.537 kb on - strand, within MMJJ_RS00300 at 57.611 kb on + strand, within MMJJ_RS00300 at 57.686 kb on + strand, within MMJJ_RS00300 at 57.706 kb on - strand, within MMJJ_RS00300 at 57.707 kb on + strand, within MMJJ_RS00300 at 57.707 kb on + strand, within MMJJ_RS00300 at 57.715 kb on - strand, within MMJJ_RS00300 at 57.760 kb on + strand, within MMJJ_RS00300 at 57.760 kb on + strand, within MMJJ_RS00300 at 57.760 kb on + strand, within MMJJ_RS00300 at 57.762 kb on - strand, within MMJJ_RS00300 at 57.767 kb on - strand, within MMJJ_RS00300 at 57.767 kb on - strand, within MMJJ_RS00300 at 57.796 kb on - strand, within MMJJ_RS00300 at 57.796 kb on - strand, within MMJJ_RS00300 at 57.797 kb on + strand, within MMJJ_RS00300 at 57.797 kb on + strand, within MMJJ_RS00300 at 57.811 kb on - strand, within MMJJ_RS00300 at 57.812 kb on + strand, within MMJJ_RS00300 at 57.843 kb on - strand, within MMJJ_RS00300 at 57.844 kb on + strand, within MMJJ_RS00300 at 57.857 kb on + strand at 57.861 kb on - strand at 57.862 kb on + strand at 57.866 kb on + strand at 57.866 kb on + strand at 57.871 kb on + strand at 57.886 kb on - strand at 57.910 kb on + strand at 57.910 kb on + strand at 57.934 kb on + strand at 57.956 kb on - strand at 57.961 kb on + strand at 57.961 kb on + strand at 58.020 kb on - strand, within MMJJ_RS00305 at 58.020 kb on - strand, within MMJJ_RS00305 at 58.020 kb on - strand, within MMJJ_RS00305 at 58.039 kb on + strand, within MMJJ_RS00305 at 58.048 kb on + strand, within MMJJ_RS00305 at 58.056 kb on - strand, within MMJJ_RS00305 at 58.075 kb on - strand, within MMJJ_RS00305 at 58.159 kb on + strand, within MMJJ_RS00305 at 58.163 kb on - strand, within MMJJ_RS00305 at 58.214 kb on - strand, within MMJJ_RS00305 at 58.234 kb on + strand, within MMJJ_RS00305 at 58.347 kb on + strand, within MMJJ_RS00305 at 58.350 kb on - strand, within MMJJ_RS00305 at 58.350 kb on - strand, within MMJJ_RS00305 at 58.350 kb on - strand, within MMJJ_RS00305 at 58.351 kb on + strand, within MMJJ_RS00305 at 58.386 kb on - strand, within MMJJ_RS00305 at 58.389 kb on - strand, within MMJJ_RS00305 at 58.455 kb on - strand, within MMJJ_RS00305 at 58.460 kb on - strand, within MMJJ_RS00305 at 58.464 kb on - strand, within MMJJ_RS00305 at 58.464 kb on - strand, within MMJJ_RS00305 at 58.465 kb on + strand, within MMJJ_RS00305 at 58.468 kb on + strand, within MMJJ_RS00305 at 58.508 kb on - strand at 58.508 kb on - strand at 58.508 kb on - strand at 58.509 kb on + strand at 58.509 kb on + strand at 58.542 kb on + strand at 58.574 kb on + strand at 58.600 kb on - strand at 58.600 kb on - strand at 58.600 kb on - strand at 58.601 kb on + strand at 58.625 kb on + strand at 58.628 kb on - strand at 58.628 kb on - strand at 58.629 kb on + strand at 58.629 kb on + strand at 58.671 kb on - strand at 58.671 kb on - strand at 58.672 kb on + strand at 58.685 kb on - strand at 58.694 kb on + strand at 58.694 kb on + strand at 58.697 kb on - strand at 58.698 kb on + strand, within MMJJ_RS00310 at 58.698 kb on + strand, within MMJJ_RS00310 at 58.705 kb on + strand, within MMJJ_RS00310 at 58.705 kb on + strand, within MMJJ_RS00310 at 58.720 kb on - strand, within MMJJ_RS00310 at 58.750 kb on - strand, within MMJJ_RS00310 at 58.758 kb on + strand, within MMJJ_RS00310 at 58.771 kb on + strand, within MMJJ_RS00310 at 58.807 kb on - strand, within MMJJ_RS00310 at 58.818 kb on - strand, within MMJJ_RS00310 at 58.818 kb on - strand, within MMJJ_RS00310 at 58.824 kb on - strand, within MMJJ_RS00310 at 58.825 kb on + strand, within MMJJ_RS00310 at 58.853 kb on - strand, within MMJJ_RS00310 at 58.856 kb on + strand, within MMJJ_RS00310 at 58.887 kb on - strand, within MMJJ_RS00310 at 58.888 kb on + strand, within MMJJ_RS00310 at 58.971 kb on - strand, within MMJJ_RS00310 at 59.013 kb on - strand, within MMJJ_RS00310 at 59.047 kb on + strand, within MMJJ_RS00310 at 59.050 kb on + strand, within MMJJ_RS00310 at 59.050 kb on + strand, within MMJJ_RS00310 at 59.050 kb on + strand, within MMJJ_RS00310 at 59.050 kb on + strand, within MMJJ_RS00310 at 59.072 kb on - strand, within MMJJ_RS00310 at 59.072 kb on - strand, within MMJJ_RS00310 at 59.111 kb on + strand, within MMJJ_RS00310 at 59.120 kb on - strand, within MMJJ_RS00310 at 59.133 kb on - strand, within MMJJ_RS00310 at 59.134 kb on + strand, within MMJJ_RS00310 at 59.141 kb on + strand, within MMJJ_RS00310 at 59.167 kb on + strand, within MMJJ_RS00310 at 59.253 kb on - strand, within MMJJ_RS00310 at 59.311 kb on + strand, within MMJJ_RS00310 at 59.377 kb on - strand at 59.378 kb on + strand at 59.422 kb on + strand at 59.471 kb on + strand at 59.474 kb on - strand at 59.474 kb on - strand at 59.474 kb on - strand at 59.475 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate pooled triplicate planktonic cells remove 57,015 - MMJJ_RS00295 0.47 -1.2 57,015 - MMJJ_RS00295 0.47 +0.0 57,081 - MMJJ_RS00295 0.65 +0.4 57,081 - MMJJ_RS00295 0.65 -0.1 57,081 - MMJJ_RS00295 0.65 +0.4 57,082 + MMJJ_RS00295 0.65 -0.9 57,084 - MMJJ_RS00295 0.66 -0.6 57,084 - MMJJ_RS00295 0.66 +0.0 57,084 - MMJJ_RS00295 0.66 +0.4 57,084 - MMJJ_RS00295 0.66 +0.6 57,084 - MMJJ_RS00295 0.66 -0.6 57,084 - MMJJ_RS00295 0.66 +0.0 57,084 - MMJJ_RS00295 0.66 -0.1 57,085 + MMJJ_RS00295 0.66 +0.2 57,092 + MMJJ_RS00295 0.68 +0.5 57,092 + MMJJ_RS00295 0.68 -1.1 57,092 + MMJJ_RS00295 0.68 +0.6 57,099 - MMJJ_RS00295 0.70 -0.2 57,130 + MMJJ_RS00295 0.78 +2.6 57,130 + MMJJ_RS00295 0.78 +0.1 57,149 - MMJJ_RS00295 0.83 +0.3 57,149 - MMJJ_RS00295 0.83 -0.6 57,149 - MMJJ_RS00295 0.83 -0.4 57,150 + MMJJ_RS00295 0.83 -0.3 57,150 + MMJJ_RS00295 0.83 -0.0 57,151 - MMJJ_RS00295 0.84 -0.1 57,152 + MMJJ_RS00295 0.84 -0.4 57,152 + MMJJ_RS00295 0.84 +0.2 57,156 - MMJJ_RS00295 0.85 -0.3 57,156 - MMJJ_RS00295 0.85 +0.6 57,156 - MMJJ_RS00295 0.85 +1.9 57,156 - MMJJ_RS00295 0.85 -0.2 57,157 + MMJJ_RS00295 0.85 -0.2 57,223 - +0.3 57,224 + +0.4 57,314 + MMJJ_RS00300 0.13 -0.5 57,334 + MMJJ_RS00300 0.16 -0.0 57,352 + MMJJ_RS00300 0.18 +0.1 57,432 - MMJJ_RS00300 0.30 -0.2 57,469 + MMJJ_RS00300 0.35 +0.5 57,472 - MMJJ_RS00300 0.36 +0.2 57,473 + MMJJ_RS00300 0.36 -1.1 57,501 - MMJJ_RS00300 0.40 -0.0 57,537 - MMJJ_RS00300 0.45 +0.4 57,611 + MMJJ_RS00300 0.56 -0.2 57,686 + MMJJ_RS00300 0.67 -0.1 57,706 - MMJJ_RS00300 0.69 +0.4 57,707 + MMJJ_RS00300 0.70 +1.3 57,707 + MMJJ_RS00300 0.70 -1.3 57,715 - MMJJ_RS00300 0.71 -0.2 57,760 + MMJJ_RS00300 0.77 -0.1 57,760 + MMJJ_RS00300 0.77 -0.5 57,760 + MMJJ_RS00300 0.77 -0.2 57,762 - MMJJ_RS00300 0.78 +0.9 57,767 - MMJJ_RS00300 0.78 -0.4 57,767 - MMJJ_RS00300 0.78 +0.5 57,796 - MMJJ_RS00300 0.82 -0.3 57,796 - MMJJ_RS00300 0.82 +0.7 57,797 + MMJJ_RS00300 0.83 -1.0 57,797 + MMJJ_RS00300 0.83 -0.1 57,811 - MMJJ_RS00300 0.85 -0.2 57,812 + MMJJ_RS00300 0.85 -1.1 57,843 - MMJJ_RS00300 0.89 +0.0 57,844 + MMJJ_RS00300 0.89 +0.5 57,857 + -0.5 57,861 - -0.7 57,862 + +0.1 57,866 + -0.3 57,866 + +0.1 57,871 + -0.2 57,886 - +0.1 57,910 + -0.7 57,910 + +0.4 57,934 + +0.0 57,956 - +0.1 57,961 + +0.1 57,961 + -0.1 58,020 - MMJJ_RS00305 0.14 -0.0 58,020 - MMJJ_RS00305 0.14 +3.3 58,020 - MMJJ_RS00305 0.14 +0.2 58,039 + MMJJ_RS00305 0.17 +0.4 58,048 + MMJJ_RS00305 0.18 +0.1 58,056 - MMJJ_RS00305 0.20 +0.2 58,075 - MMJJ_RS00305 0.23 +0.6 58,159 + MMJJ_RS00305 0.36 +0.1 58,163 - MMJJ_RS00305 0.37 -0.3 58,214 - MMJJ_RS00305 0.45 +0.3 58,234 + MMJJ_RS00305 0.49 +0.9 58,347 + MMJJ_RS00305 0.67 +0.1 58,350 - MMJJ_RS00305 0.68 +1.0 58,350 - MMJJ_RS00305 0.68 +1.7 58,350 - MMJJ_RS00305 0.68 +0.9 58,351 + MMJJ_RS00305 0.68 +0.0 58,386 - MMJJ_RS00305 0.74 +1.1 58,389 - MMJJ_RS00305 0.74 -0.1 58,455 - MMJJ_RS00305 0.85 +0.7 58,460 - MMJJ_RS00305 0.86 -0.3 58,464 - MMJJ_RS00305 0.87 -0.3 58,464 - MMJJ_RS00305 0.87 +0.0 58,465 + MMJJ_RS00305 0.87 +0.1 58,468 + MMJJ_RS00305 0.87 +0.7 58,508 - -2.4 58,508 - -0.2 58,508 - +0.1 58,509 + -0.1 58,509 + +0.0 58,542 + +0.2 58,574 + -0.5 58,600 - -1.0 58,600 - -0.1 58,600 - +0.5 58,601 + +0.2 58,625 + -0.2 58,628 - -0.2 58,628 - -0.2 58,629 + -0.2 58,629 + +0.1 58,671 - -0.4 58,671 - +0.0 58,672 + +0.3 58,685 - -0.1 58,694 + +2.9 58,694 + +0.1 58,697 - +0.1 58,698 + MMJJ_RS00310 0.10 -1.1 58,698 + MMJJ_RS00310 0.10 -2.1 58,705 + MMJJ_RS00310 0.11 +0.2 58,705 + MMJJ_RS00310 0.11 -1.7 58,720 - MMJJ_RS00310 0.13 -0.3 58,750 - MMJJ_RS00310 0.16 -0.3 58,758 + MMJJ_RS00310 0.17 -0.1 58,771 + MMJJ_RS00310 0.19 -0.1 58,807 - MMJJ_RS00310 0.23 +0.3 58,818 - MMJJ_RS00310 0.25 +2.0 58,818 - MMJJ_RS00310 0.25 +0.6 58,824 - MMJJ_RS00310 0.26 -0.5 58,825 + MMJJ_RS00310 0.26 +0.1 58,853 - MMJJ_RS00310 0.29 -0.1 58,856 + MMJJ_RS00310 0.30 +0.5 58,887 - MMJJ_RS00310 0.33 -0.2 58,888 + MMJJ_RS00310 0.33 +1.6 58,971 - MMJJ_RS00310 0.44 +0.5 59,013 - MMJJ_RS00310 0.49 -0.6 59,047 + MMJJ_RS00310 0.53 +2.2 59,050 + MMJJ_RS00310 0.53 +0.2 59,050 + MMJJ_RS00310 0.53 -0.4 59,050 + MMJJ_RS00310 0.53 -0.0 59,050 + MMJJ_RS00310 0.53 -0.5 59,072 - MMJJ_RS00310 0.56 -0.7 59,072 - MMJJ_RS00310 0.56 +1.3 59,111 + MMJJ_RS00310 0.61 +0.4 59,120 - MMJJ_RS00310 0.62 -1.3 59,133 - MMJJ_RS00310 0.64 -0.3 59,134 + MMJJ_RS00310 0.64 +0.2 59,141 + MMJJ_RS00310 0.65 -2.2 59,167 + MMJJ_RS00310 0.68 -0.3 59,253 - MMJJ_RS00310 0.78 -0.6 59,311 + MMJJ_RS00310 0.85 -1.0 59,377 - +0.3 59,378 + -0.5 59,422 + +0.4 59,471 + +0.4 59,474 - -0.3 59,474 - +0.3 59,474 - +0.6 59,475 + -0.1
Or see this region's nucleotide sequence