Strain Fitness in Rahnella sp. WP5 around EX31_RS24935

Experiment: L-Serine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS25955 and EX31_RS24935 are separated by 618 nucleotidesEX31_RS24935 and EX31_RS24940 overlap by 38 nucleotides EX31_RS25955: EX31_RS25955 - hypothetical protein, at 2,171 to 2,785 _RS25955 EX31_RS24935: EX31_RS24935 - hemagglutinin, at 3,404 to 5,838 _RS24935 EX31_RS24940: EX31_RS24940 - VENN motif pre-toxin domain-containing protein, at 5,801 to 6,649 _RS24940 Position (kb) 3 4 5 6Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2.520 kb on - strand, within EX31_RS25955at 2.548 kb on + strand, within EX31_RS25955at 2.548 kb on + strand, within EX31_RS25955at 2.561 kb on - strand, within EX31_RS25955at 2.694 kb on + strand, within EX31_RS25955at 2.695 kb on - strand, within EX31_RS25955at 2.695 kb on - strand, within EX31_RS25955at 2.699 kb on - strand, within EX31_RS25955at 2.715 kb on + strand, within EX31_RS25955at 2.715 kb on + strand, within EX31_RS25955at 2.715 kb on + strand, within EX31_RS25955at 2.716 kb on - strand, within EX31_RS25955at 2.719 kb on + strand, within EX31_RS25955at 2.720 kb on - strand, within EX31_RS25955at 2.720 kb on - strand, within EX31_RS25955at 2.824 kb on + strandat 2.824 kb on + strandat 2.825 kb on - strandat 2.828 kb on + strandat 2.829 kb on - strandat 2.829 kb on - strandat 2.829 kb on - strandat 2.829 kb on - strandat 2.829 kb on - strandat 2.829 kb on - strandat 2.829 kb on - strandat 2.829 kb on - strandat 2.830 kb on + strandat 2.830 kb on + strandat 2.830 kb on + strandat 2.830 kb on + strandat 2.830 kb on + strandat 2.830 kb on + strandat 2.831 kb on - strandat 2.875 kb on - strandat 2.875 kb on - strandat 2.907 kb on - strandat 2.909 kb on + strandat 2.909 kb on + strandat 2.910 kb on - strandat 2.910 kb on - strandat 2.910 kb on - strandat 2.929 kb on + strandat 2.933 kb on - strandat 2.938 kb on + strandat 2.938 kb on + strandat 2.943 kb on - strandat 3.362 kb on - strandat 3.399 kb on - strandat 3.482 kb on + strandat 3.566 kb on - strandat 3.574 kb on + strandat 3.592 kb on + strandat 3.593 kb on - strandat 3.683 kb on + strand, within EX31_RS24935at 3.684 kb on - strand, within EX31_RS24935at 3.758 kb on + strand, within EX31_RS24935at 3.758 kb on + strand, within EX31_RS24935at 3.759 kb on - strand, within EX31_RS24935at 3.759 kb on - strand, within EX31_RS24935at 4.454 kb on - strand, within EX31_RS24935at 4.459 kb on + strand, within EX31_RS24935at 4.519 kb on + strand, within EX31_RS24935at 4.519 kb on + strand, within EX31_RS24935at 4.519 kb on + strand, within EX31_RS24935at 4.520 kb on - strand, within EX31_RS24935at 4.520 kb on - strand, within EX31_RS24935at 4.597 kb on + strand, within EX31_RS24935at 4.597 kb on + strand, within EX31_RS24935at 4.597 kb on + strand, within EX31_RS24935at 4.597 kb on + strand, within EX31_RS24935at 4.629 kb on + strand, within EX31_RS24935at 4.629 kb on + strand, within EX31_RS24935at 4.629 kb on + strand, within EX31_RS24935at 4.648 kb on + strand, within EX31_RS24935at 4.666 kb on + strand, within EX31_RS24935at 4.703 kb on - strand, within EX31_RS24935at 4.803 kb on + strand, within EX31_RS24935at 4.848 kb on + strand, within EX31_RS24935at 4.848 kb on + strand, within EX31_RS24935at 4.849 kb on - strand, within EX31_RS24935at 4.937 kb on + strand, within EX31_RS24935at 4.945 kb on + strand, within EX31_RS24935at 4.946 kb on - strand, within EX31_RS24935at 4.946 kb on - strand, within EX31_RS24935at 5.014 kb on + strand, within EX31_RS24935at 5.026 kb on + strand, within EX31_RS24935at 5.027 kb on - strand, within EX31_RS24935at 5.027 kb on - strand, within EX31_RS24935at 5.099 kb on + strand, within EX31_RS24935at 5.099 kb on + strand, within EX31_RS24935at 5.099 kb on + strand, within EX31_RS24935at 5.099 kb on + strand, within EX31_RS24935at 5.113 kb on + strand, within EX31_RS24935at 5.113 kb on + strand, within EX31_RS24935at 5.114 kb on - strand, within EX31_RS24935at 5.114 kb on - strand, within EX31_RS24935at 5.161 kb on + strand, within EX31_RS24935at 5.161 kb on + strand, within EX31_RS24935at 5.161 kb on + strand, within EX31_RS24935at 5.216 kb on + strand, within EX31_RS24935at 5.216 kb on + strand, within EX31_RS24935at 5.216 kb on + strand, within EX31_RS24935at 5.217 kb on - strand, within EX31_RS24935at 5.217 kb on - strand, within EX31_RS24935at 5.217 kb on - strand, within EX31_RS24935at 5.371 kb on + strand, within EX31_RS24935at 5.410 kb on + strand, within EX31_RS24935at 5.411 kb on - strand, within EX31_RS24935at 5.462 kb on + strand, within EX31_RS24935at 5.604 kb on - strandat 5.609 kb on - strandat 5.678 kb on + strandat 5.678 kb on + strandat 5.679 kb on - strandat 5.983 kb on - strand, within EX31_RS24940at 6.175 kb on - strand, within EX31_RS24940at 6.196 kb on - strand, within EX31_RS24940at 6.238 kb on + strand, within EX31_RS24940at 6.238 kb on + strand, within EX31_RS24940at 6.238 kb on + strand, within EX31_RS24940at 6.238 kb on + strand, within EX31_RS24940at 6.243 kb on + strand, within EX31_RS24940at 6.243 kb on + strand, within EX31_RS24940at 6.243 kb on + strand, within EX31_RS24940at 6.243 kb on + strand, within EX31_RS24940at 6.243 kb on + strand, within EX31_RS24940at 6.243 kb on + strand, within EX31_RS24940at 6.243 kb on + strand, within EX31_RS24940at 6.243 kb on + strand, within EX31_RS24940at 6.244 kb on - strand, within EX31_RS24940at 6.244 kb on - strand, within EX31_RS24940at 6.244 kb on - strand, within EX31_RS24940at 6.244 kb on - strand, within EX31_RS24940at 6.246 kb on + strand, within EX31_RS24940at 6.264 kb on + strand, within EX31_RS24940at 6.264 kb on + strand, within EX31_RS24940at 6.264 kb on + strand, within EX31_RS24940at 6.265 kb on - strand, within EX31_RS24940at 6.265 kb on - strand, within EX31_RS24940at 6.265 kb on - strand, within EX31_RS24940at 6.337 kb on + strand, within EX31_RS24940at 6.337 kb on + strand, within EX31_RS24940at 6.388 kb on - strand, within EX31_RS24940at 6.418 kb on + strand, within EX31_RS24940at 6.435 kb on + strand, within EX31_RS24940at 6.440 kb on + strand, within EX31_RS24940at 6.440 kb on + strand, within EX31_RS24940at 6.441 kb on - strand, within EX31_RS24940at 6.443 kb on + strand, within EX31_RS24940at 6.482 kb on + strand, within EX31_RS24940at 6.482 kb on + strand, within EX31_RS24940at 6.484 kb on + strand, within EX31_RS24940at 6.484 kb on + strand, within EX31_RS24940at 6.485 kb on - strand, within EX31_RS24940at 6.488 kb on - strand, within EX31_RS24940at 6.488 kb on - strand, within EX31_RS24940at 6.488 kb on - strand, within EX31_RS24940at 6.493 kb on + strand, within EX31_RS24940at 6.493 kb on + strand, within EX31_RS24940at 6.494 kb on - strand, within EX31_RS24940at 6.494 kb on - strand, within EX31_RS24940at 6.652 kb on + strandat 6.696 kb on - strandat 6.697 kb on + strandat 6.782 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking
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2,520 - EX31_RS25955 0.57 -0.0
2,548 + EX31_RS25955 0.61 +0.4
2,548 + EX31_RS25955 0.61 -1.6
2,561 - EX31_RS25955 0.63 -0.4
2,694 + EX31_RS25955 0.85 -0.2
2,695 - EX31_RS25955 0.85 +0.4
2,695 - EX31_RS25955 0.85 +1.0
2,699 - EX31_RS25955 0.86 +1.4
2,715 + EX31_RS25955 0.88 +1.4
2,715 + EX31_RS25955 0.88 -0.0
2,715 + EX31_RS25955 0.88 -0.7
2,716 - EX31_RS25955 0.89 -0.6
2,719 + EX31_RS25955 0.89 -0.7
2,720 - EX31_RS25955 0.89 +1.1
2,720 - EX31_RS25955 0.89 +0.4
2,824 + -0.6
2,824 + -0.6
2,825 - +0.4
2,828 + -0.6
2,829 - +0.4
2,829 - +1.7
2,829 - -0.7
2,829 - -0.4
2,829 - -0.4
2,829 - +0.4
2,829 - +0.1
2,829 - +1.0
2,830 + +2.1
2,830 + +0.8
2,830 + +0.8
2,830 + +0.3
2,830 + +0.5
2,830 + -0.5
2,831 - +0.4
2,875 - -0.4
2,875 - +2.9
2,907 - +0.2
2,909 + +1.2
2,909 + +1.6
2,910 - +0.6
2,910 - +0.2
2,910 - -1.6
2,929 + -0.0
2,933 - -0.5
2,938 + +0.4
2,938 + +1.8
2,943 - +1.7
3,362 - +0.4
3,399 - -0.2
3,482 + -0.9
3,566 - -0.4
3,574 + +0.0
3,592 + -0.2
3,593 - +1.4
3,683 + EX31_RS24935 0.11 -0.2
3,684 - EX31_RS24935 0.11 +1.6
3,758 + EX31_RS24935 0.15 +1.4
3,758 + EX31_RS24935 0.15 +0.9
3,759 - EX31_RS24935 0.15 +1.4
3,759 - EX31_RS24935 0.15 +0.4
4,454 - EX31_RS24935 0.43 +0.7
4,459 + EX31_RS24935 0.43 +0.7
4,519 + EX31_RS24935 0.46 -0.2
4,519 + EX31_RS24935 0.46 +0.0
4,519 + EX31_RS24935 0.46 +0.4
4,520 - EX31_RS24935 0.46 +0.3
4,520 - EX31_RS24935 0.46 +0.8
4,597 + EX31_RS24935 0.49 +1.8
4,597 + EX31_RS24935 0.49 +0.2
4,597 + EX31_RS24935 0.49 +0.4
4,597 + EX31_RS24935 0.49 -1.0
4,629 + EX31_RS24935 0.50 +0.6
4,629 + EX31_RS24935 0.50 +0.2
4,629 + EX31_RS24935 0.50 +2.8
4,648 + EX31_RS24935 0.51 -1.6
4,666 + EX31_RS24935 0.52 -0.2
4,703 - EX31_RS24935 0.53 -0.9
4,803 + EX31_RS24935 0.57 +1.3
4,848 + EX31_RS24935 0.59 +0.4
4,848 + EX31_RS24935 0.59 -2.2
4,849 - EX31_RS24935 0.59 +2.0
4,937 + EX31_RS24935 0.63 -0.7
4,945 + EX31_RS24935 0.63 -0.3
4,946 - EX31_RS24935 0.63 -0.4
4,946 - EX31_RS24935 0.63 +0.0
5,014 + EX31_RS24935 0.66 +0.8
5,026 + EX31_RS24935 0.67 +0.3
5,027 - EX31_RS24935 0.67 +0.1
5,027 - EX31_RS24935 0.67 -0.5
5,099 + EX31_RS24935 0.70 -0.0
5,099 + EX31_RS24935 0.70 +0.2
5,099 + EX31_RS24935 0.70 +1.4
5,099 + EX31_RS24935 0.70 +0.9
5,113 + EX31_RS24935 0.70 -0.5
5,113 + EX31_RS24935 0.70 -0.6
5,114 - EX31_RS24935 0.70 +1.4
5,114 - EX31_RS24935 0.70 +1.7
5,161 + EX31_RS24935 0.72 +1.0
5,161 + EX31_RS24935 0.72 +0.0
5,161 + EX31_RS24935 0.72 -0.6
5,216 + EX31_RS24935 0.74 +0.7
5,216 + EX31_RS24935 0.74 +0.4
5,216 + EX31_RS24935 0.74 -0.4
5,217 - EX31_RS24935 0.74 -0.2
5,217 - EX31_RS24935 0.74 +1.0
5,217 - EX31_RS24935 0.74 -0.6
5,371 + EX31_RS24935 0.81 +0.2
5,410 + EX31_RS24935 0.82 +0.1
5,411 - EX31_RS24935 0.82 +0.6
5,462 + EX31_RS24935 0.85 +0.9
5,604 - -0.7
5,609 - +0.1
5,678 + -0.4
5,678 + -1.7
5,679 - -1.4
5,983 - EX31_RS24940 0.21 -1.7
6,175 - EX31_RS24940 0.44 +1.4
6,196 - EX31_RS24940 0.47 +0.1
6,238 + EX31_RS24940 0.51 +0.8
6,238 + EX31_RS24940 0.51 -0.0
6,238 + EX31_RS24940 0.51 +0.2
6,238 + EX31_RS24940 0.51 +0.0
6,243 + EX31_RS24940 0.52 -1.6
6,243 + EX31_RS24940 0.52 -0.9
6,243 + EX31_RS24940 0.52 +0.4
6,243 + EX31_RS24940 0.52 +0.7
6,243 + EX31_RS24940 0.52 +0.3
6,243 + EX31_RS24940 0.52 -1.2
6,243 + EX31_RS24940 0.52 +0.1
6,243 + EX31_RS24940 0.52 +0.4
6,244 - EX31_RS24940 0.52 +1.4
6,244 - EX31_RS24940 0.52 +0.1
6,244 - EX31_RS24940 0.52 +0.2
6,244 - EX31_RS24940 0.52 +0.6
6,246 + EX31_RS24940 0.52 -0.8
6,264 + EX31_RS24940 0.55 +0.8
6,264 + EX31_RS24940 0.55 -1.0
6,264 + EX31_RS24940 0.55 -0.8
6,265 - EX31_RS24940 0.55 -0.7
6,265 - EX31_RS24940 0.55 +0.3
6,265 - EX31_RS24940 0.55 -1.3
6,337 + EX31_RS24940 0.63 -2.3
6,337 + EX31_RS24940 0.63 +3.0
6,388 - EX31_RS24940 0.69 +0.4
6,418 + EX31_RS24940 0.73 +2.6
6,435 + EX31_RS24940 0.75 +1.0
6,440 + EX31_RS24940 0.75 +0.4
6,440 + EX31_RS24940 0.75 +0.4
6,441 - EX31_RS24940 0.75 -0.0
6,443 + EX31_RS24940 0.76 -0.6
6,482 + EX31_RS24940 0.80 -0.9
6,482 + EX31_RS24940 0.80 +0.0
6,484 + EX31_RS24940 0.80 +0.4
6,484 + EX31_RS24940 0.80 +1.2
6,485 - EX31_RS24940 0.81 +1.4
6,488 - EX31_RS24940 0.81 +1.6
6,488 - EX31_RS24940 0.81 -0.4
6,488 - EX31_RS24940 0.81 -0.7
6,493 + EX31_RS24940 0.82 -0.7
6,493 + EX31_RS24940 0.82 +0.4
6,494 - EX31_RS24940 0.82 +0.7
6,494 - EX31_RS24940 0.82 +0.4
6,652 + +0.9
6,696 - -2.3
6,697 + -0.6
6,782 - +0.4

Or see this region's nucleotide sequence