Strain Fitness in Rahnella sp. WP5 around EX31_RS17080

Experiment: L-Serine (N); ShewMM media; shaking

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine (N); ShewMM media; shaking
6,214	-		EX31_RS17070	0.87	+1.4
6,226	+		EX31_RS17070	0.88	+1.0
6,226	+		EX31_RS17070	0.88	+0.5
6,226	+		EX31_RS17070	0.88	+1.6
6,226	+		EX31_RS17070	0.88	+1.6
6,227	-		EX31_RS17070	0.88	+0.6
6,227	-		EX31_RS17070	0.88	-0.3
6,227	-		EX31_RS17070	0.88	+1.5
6,227	-		EX31_RS17070	0.88	+0.4
6,227	-		EX31_RS17070	0.88	-0.6
6,227	-		EX31_RS17070	0.88	+1.4
6,260	-				+0.0
6,265	-				+0.4
6,328	+				+1.7
6,328	+				-1.3
6,329	-				+0.8
6,329	-				+0.3
6,329	-				+0.4
6,329	-				+0.6
6,504	+				+1.7
6,504	+				+0.9
6,505	-				-0.1
6,505	-				+1.2
6,511	+				+0.7
6,513	+				+0.1
6,513	+				-0.0
6,514	-				+1.4
6,514	-				+0.8
6,514	-				-1.0
6,514	-				+0.1
6,520	-				-1.8
6,520	-				+0.6
6,574	+				+1.4
6,574	+				+0.7
6,574	+				-0.9
6,574	+				+0.4
6,574	+				+1.0
6,574	+				+0.8
6,574	+				-0.1
6,575	-				-0.0
6,575	-				-0.2
6,575	-				-1.1
6,575	-				+0.7
6,575	-				+0.6
6,575	-				+1.4
6,651	-		EX31_RS17075	0.18	+0.8
6,679	+		EX31_RS17075	0.23	-0.3
6,679	+		EX31_RS17075	0.23	-1.9
6,679	+		EX31_RS17075	0.23	+0.9
6,679	+		EX31_RS17075	0.23	+0.3
6,680	-		EX31_RS17075	0.23	+1.4
6,680	-		EX31_RS17075	0.23	-0.4
6,680	-		EX31_RS17075	0.23	-0.0
6,680	-		EX31_RS17075	0.23	+0.1
6,680	-		EX31_RS17075	0.23	-0.4
6,680	-		EX31_RS17075	0.23	-0.2
6,680	-		EX31_RS17075	0.23	+0.0
6,680	-		EX31_RS17075	0.23	+0.6
6,680	-		EX31_RS17075	0.23	+0.1
6,680	-		EX31_RS17075	0.23	+1.2
6,680	-		EX31_RS17075	0.23	+0.8
6,680	-		EX31_RS17075	0.23	+0.3
6,680	-		EX31_RS17075	0.23	+1.1
6,680	-		EX31_RS17075	0.23	-1.6
6,680	-		EX31_RS17075	0.23	+2.0
6,680	-		EX31_RS17075	0.23	+0.4
6,680	-		EX31_RS17075	0.23	-0.4
6,689	+		EX31_RS17075	0.25	+1.5
6,690	-		EX31_RS17075	0.25	+1.0
6,690	-		EX31_RS17075	0.25	+0.8
6,690	-		EX31_RS17075	0.25	-0.3
6,691	+		EX31_RS17075	0.25	-2.5
6,691	+		EX31_RS17075	0.25	-0.3
6,691	+		EX31_RS17075	0.25	+1.0
6,691	+		EX31_RS17075	0.25	+1.4
6,691	+		EX31_RS17075	0.25	+0.8
6,692	-		EX31_RS17075	0.25	+0.3
6,692	-		EX31_RS17075	0.25	-0.2
6,692	-		EX31_RS17075	0.25	-0.2
6,692	-		EX31_RS17075	0.25	+0.8
6,692	-		EX31_RS17075	0.25	-0.6
6,692	-		EX31_RS17075	0.25	-1.4
6,692	-		EX31_RS17075	0.25	-0.5
6,692	-		EX31_RS17075	0.25	+0.6
6,692	-		EX31_RS17075	0.25	-0.2
6,692	-		EX31_RS17075	0.25	+0.5
6,692	-		EX31_RS17075	0.25	+1.4
6,692	-		EX31_RS17075	0.25	-0.7
6,692	-		EX31_RS17075	0.25	+0.2
6,692	-		EX31_RS17075	0.25	+0.3
6,692	-		EX31_RS17075	0.25	+0.5
6,692	-		EX31_RS17075	0.25	+0.3
6,692	-		EX31_RS17075	0.25	+0.3
6,692	-		EX31_RS17075	0.25	+0.6
6,692	-		EX31_RS17075	0.25	-1.2
6,692	-		EX31_RS17075	0.25	+0.0
6,696	-		EX31_RS17075	0.26	-0.2
6,696	-		EX31_RS17075	0.26	+0.3
6,727	+		EX31_RS17075	0.32	-0.3
6,727	+		EX31_RS17075	0.32	+0.7
6,727	+		EX31_RS17075	0.32	-0.4
6,727	+		EX31_RS17075	0.32	+0.7
6,727	+		EX31_RS17075	0.32	+1.1
6,727	+		EX31_RS17075	0.32	-0.1
6,727	+		EX31_RS17075	0.32	+0.3
6,727	+		EX31_RS17075	0.32	+2.0
6,728	-		EX31_RS17075	0.32	-0.7
6,728	-		EX31_RS17075	0.32	-0.5
6,728	-		EX31_RS17075	0.32	-0.3
6,728	-		EX31_RS17075	0.32	-1.3
6,728	-		EX31_RS17075	0.32	+0.1
6,728	-		EX31_RS17075	0.32	-0.3
6,728	-		EX31_RS17075	0.32	+1.0
6,791	+		EX31_RS17075	0.44	+0.0
6,803	+		EX31_RS17075	0.46	+0.5
6,803	+		EX31_RS17075	0.46	-0.3
6,803	+		EX31_RS17075	0.46	-0.2
6,803	+		EX31_RS17075	0.46	+0.1
6,803	+		EX31_RS17075	0.46	+1.3
6,803	+		EX31_RS17075	0.46	-1.7
6,803	+		EX31_RS17075	0.46	+1.8
6,803	+		EX31_RS17075	0.46	+1.0
6,804	-		EX31_RS17075	0.47	+0.2
6,804	-		EX31_RS17075	0.47	-0.4
6,804	-		EX31_RS17075	0.47	+1.1
6,804	-		EX31_RS17075	0.47	-0.3
6,804	-		EX31_RS17075	0.47	-0.4
6,805	+		EX31_RS17075	0.47	-2.4
6,805	+		EX31_RS17075	0.47	+0.4
6,806	-		EX31_RS17075	0.47	-0.1
6,806	-		EX31_RS17075	0.47	+0.5
6,806	-		EX31_RS17075	0.47	-0.8
6,813	-		EX31_RS17075	0.48	-2.6
6,820	+		EX31_RS17075	0.50	+1.6
6,875	+		EX31_RS17075	0.60	+1.4
6,920	+		EX31_RS17075	0.69	-1.3
6,921	-		EX31_RS17075	0.69	+0.0
6,942	-		EX31_RS17075	0.73	+0.2
6,942	-		EX31_RS17075	0.73	-0.2
6,942	-		EX31_RS17075	0.73	-0.3
6,942	-		EX31_RS17075	0.73	+1.3
6,953	-		EX31_RS17075	0.75	+1.4
6,953	-		EX31_RS17075	0.75	+0.6
7,063	-				-0.2
7,100	+				+3.0
7,101	-				+0.3
7,101	-				-0.1
7,104	-				-0.2
7,104	-				-0.2
7,104	-				-1.2
7,104	-				+0.3
7,104	-				+0.2
7,106	-				+1.6
7,106	-				-2.1
7,129	-				+1.3
7,189	+				+2.6
7,190	-				-0.5
7,190	-				-0.1
7,190	-				-1.2
7,216	+				+1.6
7,217	-				+2.0
7,217	-				+0.4
7,220	+				-1.3
7,220	+				-2.0
7,221	-				+1.6
7,221	-				-0.4
7,226	+				-1.2
7,226	+				-0.3
7,227	-				+1.0
7,227	-				-0.8
7,227	-				+0.9
7,262	-				-0.1
7,262	-				+1.0
7,264	+				+1.0
7,265	-				+0.4
7,265	-				+0.0
7,303	+				+1.0
7,303	+				+0.9
7,304	-		EX31_RS17080	0.10	-0.6
7,304	-		EX31_RS17080	0.10	-0.9
7,304	-		EX31_RS17080	0.10	+0.5
7,321	+		EX31_RS17080	0.11	+2.0
7,322	-		EX31_RS17080	0.11	+0.8
7,337	+		EX31_RS17080	0.12	+2.0
7,337	+		EX31_RS17080	0.12	+1.0
7,337	+		EX31_RS17080	0.12	+0.3
7,337	+		EX31_RS17080	0.12	+0.4
7,337	+		EX31_RS17080	0.12	+2.6
7,338	-		EX31_RS17080	0.12	-0.7
7,338	-		EX31_RS17080	0.12	-0.9
7,338	-		EX31_RS17080	0.12	-0.2
7,338	-		EX31_RS17080	0.12	+0.1
7,341	+		EX31_RS17080	0.12	+1.0
7,341	+		EX31_RS17080	0.12	+0.4
7,341	+		EX31_RS17080	0.12	+0.4
7,342	-		EX31_RS17080	0.12	+0.3
7,342	-		EX31_RS17080	0.12	-0.8
7,342	-		EX31_RS17080	0.12	-0.8
7,342	-		EX31_RS17080	0.12	-0.1
7,342	-		EX31_RS17080	0.12	-1.2
7,342	-		EX31_RS17080	0.12	+0.2
7,342	-		EX31_RS17080	0.12	-0.3
7,342	-		EX31_RS17080	0.12	+0.9
7,342	-		EX31_RS17080	0.12	+1.2
7,359	+		EX31_RS17080	0.13	+0.3
7,360	-		EX31_RS17080	0.13	-0.7
7,360	-		EX31_RS17080	0.13	+0.8
7,394	+		EX31_RS17080	0.15	+0.6
7,417	+		EX31_RS17080	0.16	+1.0
7,418	-		EX31_RS17080	0.16	-0.1
7,418	-		EX31_RS17080	0.16	+0.7
7,502	+		EX31_RS17080	0.20	+0.1
7,502	+		EX31_RS17080	0.20	+0.2
7,503	-		EX31_RS17080	0.20	+0.6
7,503	-		EX31_RS17080	0.20	+0.4
7,503	-		EX31_RS17080	0.20	+0.0
7,503	-		EX31_RS17080	0.20	+0.3
7,503	-		EX31_RS17080	0.20	-1.2
7,503	-		EX31_RS17080	0.20	+0.4
7,503	-		EX31_RS17080	0.20	-0.4
7,503	-		EX31_RS17080	0.20	+1.4
7,611	-		EX31_RS17080	0.26	-0.2
7,653	-		EX31_RS17080	0.28	-0.6
7,784	+		EX31_RS17080	0.35	+0.4
7,784	+		EX31_RS17080	0.35	-2.2
7,784	+		EX31_RS17080	0.35	+0.6
7,785	-		EX31_RS17080	0.35	-0.5
7,801	-		EX31_RS17080	0.36	+1.0
7,838	+		EX31_RS17080	0.38	+0.3
7,838	+		EX31_RS17080	0.38	+0.2
7,838	+		EX31_RS17080	0.38	-0.0
7,838	+		EX31_RS17080	0.38	+0.4
7,838	+		EX31_RS17080	0.38	-0.6
7,839	-		EX31_RS17080	0.38	+0.8
7,904	+		EX31_RS17080	0.41	+2.0
7,905	-		EX31_RS17080	0.41	-0.7
7,942	+		EX31_RS17080	0.43	-0.2
7,942	+		EX31_RS17080	0.43	+1.0
7,943	-		EX31_RS17080	0.43	-1.0
7,943	-		EX31_RS17080	0.43	-1.0
7,943	-		EX31_RS17080	0.43	-0.0
7,943	-		EX31_RS17080	0.43	+0.4
7,943	-		EX31_RS17080	0.43	+0.7
7,943	-		EX31_RS17080	0.43	+0.1
7,943	-		EX31_RS17080	0.43	+1.0
8,067	+		EX31_RS17080	0.50	+0.2
8,067	+		EX31_RS17080	0.50	-0.7
8,095	-		EX31_RS17080	0.51	+1.2
8,129	+		EX31_RS17080	0.53	+0.1
8,129	+		EX31_RS17080	0.53	-0.2
8,130	-		EX31_RS17080	0.53	+0.6
8,175	+		EX31_RS17080	0.55	-0.4
8,175	+		EX31_RS17080	0.55	+0.6
8,175	+		EX31_RS17080	0.55	-1.6
8,175	+		EX31_RS17080	0.55	+0.2
8,176	-		EX31_RS17080	0.55	-2.2
8,176	-		EX31_RS17080	0.55	-1.7
8,176	-		EX31_RS17080	0.55	+0.2
8,177	+		EX31_RS17080	0.55	-0.3
8,177	+		EX31_RS17080	0.55	-0.8
8,177	+		EX31_RS17080	0.55	-2.2
8,177	+		EX31_RS17080	0.55	-1.0
8,178	-		EX31_RS17080	0.55	+1.2
8,335	-		EX31_RS17080	0.63	+0.8
8,341	+		EX31_RS17080	0.64	-2.6
8,341	+		EX31_RS17080	0.64	+0.8
8,341	+		EX31_RS17080	0.64	-1.4
8,341	+		EX31_RS17080	0.64	-0.1
8,353	+		EX31_RS17080	0.64	+0.5
8,354	-		EX31_RS17080	0.64	+0.4
8,358	+		EX31_RS17080	0.65	-0.8
8,358	+		EX31_RS17080	0.65	+1.0
8,358	+		EX31_RS17080	0.65	-0.3
8,359	-		EX31_RS17080	0.65	+0.4
8,359	-		EX31_RS17080	0.65	-0.8
8,359	-		EX31_RS17080	0.65	-0.2
8,359	-		EX31_RS17080	0.65	+0.1
8,359	-		EX31_RS17080	0.65	+0.5
8,359	-		EX31_RS17080	0.65	-0.3
8,359	-		EX31_RS17080	0.65	-0.1
8,361	-		EX31_RS17080	0.65	+1.3
8,361	-		EX31_RS17080	0.65	+0.3
8,361	-		EX31_RS17080	0.65	+0.1
8,388	+		EX31_RS17080	0.66	+0.5
8,388	+		EX31_RS17080	0.66	-0.5
8,388	+		EX31_RS17080	0.66	+1.8
8,388	+		EX31_RS17080	0.66	-0.3
8,388	+		EX31_RS17080	0.66	-0.1
8,389	-		EX31_RS17080	0.66	+0.3
8,389	-		EX31_RS17080	0.66	-1.2
8,389	-		EX31_RS17080	0.66	+0.8
8,424	+		EX31_RS17080	0.68	-0.8
8,487	+		EX31_RS17080	0.71	+0.9
8,498	+		EX31_RS17080	0.72	-1.7
8,498	+		EX31_RS17080	0.72	-0.3
8,498	+		EX31_RS17080	0.72	-1.3
8,499	-		EX31_RS17080	0.72	-0.3
8,499	-		EX31_RS17080	0.72	+0.7
8,499	-		EX31_RS17080	0.72	+0.3
8,539	-		EX31_RS17080	0.74	+0.0
8,539	-		EX31_RS17080	0.74	+0.2
8,539	-		EX31_RS17080	0.74	-0.2
8,539	-		EX31_RS17080	0.74	+0.0
8,549	+		EX31_RS17080	0.75	+0.6
8,550	-		EX31_RS17080	0.75	+0.5
8,589	+		EX31_RS17080	0.77	-1.1
8,590	-		EX31_RS17080	0.77	+0.0
8,590	-		EX31_RS17080	0.77	-1.0
8,590	-		EX31_RS17080	0.77	-0.6
8,590	-		EX31_RS17080	0.77	-0.7
8,607	-		EX31_RS17080	0.78	+0.1
8,619	+		EX31_RS17080	0.78	+0.0
8,619	+		EX31_RS17080	0.78	+0.6
8,620	-		EX31_RS17080	0.78	-0.1
8,620	-		EX31_RS17080	0.78	+1.2
8,620	-		EX31_RS17080	0.78	+1.3
8,820	+		EX31_RS17080	0.89	-0.6
8,821	-		EX31_RS17080	0.89	+0.9
8,821	-		EX31_RS17080	0.89	-0.6
8,821	-		EX31_RS17080	0.89	+0.8
8,821	-		EX31_RS17080	0.89	+0.0
8,826	+		EX31_RS17080	0.89	+0.7
8,826	+		EX31_RS17080	0.89	+0.8
8,827	-		EX31_RS17080	0.89	+0.0
8,849	-				+1.4
8,859	-				+0.4
8,859	-				+0.4
8,877	+				+0.4
8,877	+				-0.7
8,877	+				+0.1
8,877	+				+0.4
8,877	+				-0.3
8,877	+				+0.1
8,878	-				-0.3
8,878	-				+0.9
8,878	-				-1.1
8,878	-				+1.2
8,878	-				+1.6
8,878	-				+1.1
8,878	-				+2.0
8,878	-				+1.8
8,878	-				+1.0
8,906	+				-0.3
8,922	+				+1.2
8,988	+				-1.7
8,989	-				+0.9
8,989	-				-1.2
8,989	-				-1.0
9,006	+				+0.0
9,006	+				-1.1
9,007	-				-0.3
9,007	-				-0.7
9,007	-				+0.1
9,039	+				+1.0
9,039	+				+0.0
9,039	+				-0.8
9,039	+				+1.6
9,040	-				+0.1
9,040	-				-1.2
9,040	-				-0.7
9,040	-				-0.8
9,040	-				+0.1
9,040	-				+0.2
9,040	-				-1.2
9,057	-				+0.8
9,057	-				-0.3
9,060	+				-1.7
9,061	-				+0.6
9,067	-				-0.0
9,139	+				+0.2
9,140	-				-0.0
9,140	-				+0.1
9,213	+		EX31_RS17085	0.32	-0.5
9,213	+		EX31_RS17085	0.32	-1.3
9,241	-		EX31_RS17085	0.42	+0.9
9,241	-		EX31_RS17085	0.42	+0.3
9,241	-		EX31_RS17085	0.42	+0.5
9,272	-		EX31_RS17085	0.54	-0.4
9,272	-		EX31_RS17085	0.54	-0.9
9,295	-		EX31_RS17085	0.62	+0.4
9,295	-		EX31_RS17085	0.62	+1.0
9,295	-		EX31_RS17085	0.62	-0.4
9,298	+		EX31_RS17085	0.63	+0.1
9,299	-		EX31_RS17085	0.63	+0.4
9,299	-		EX31_RS17085	0.63	+0.1
9,299	-		EX31_RS17085	0.63	-1.3
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9,299	-		EX31_RS17085	0.63	+1.0
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9,460	+				-0.4
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9,476	+				+0.5
9,476	+				-1.0
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9,860	-		EX31_RS17090	0.28	+1.1
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9,927	+		EX31_RS17090	0.33	-0.1
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9,947	+		EX31_RS17090	0.35	-1.2
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