Experiment: L-Serine (N); ShewMM media; shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16650 and EX31_RS16655 are separated by 47 nucleotides EX31_RS16655 and EX31_RS16660 are separated by 205 nucleotides EX31_RS16660 and EX31_RS16665 overlap by 4 nucleotides
EX31_RS16650: EX31_RS16650 - sodium:proton antiporter, at 12,736 to 14,523
_RS16650
EX31_RS16655: EX31_RS16655 - hypothetical protein, at 14,571 to 15,002
_RS16655
EX31_RS16660: EX31_RS16660 - TetR/AcrR family transcriptional regulator, at 15,208 to 15,795
_RS16660
EX31_RS16665: EX31_RS16665 - EamA family transporter, at 15,792 to 16,718
_RS16665
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 13.683 kb on + strand, within EX31_RS16650 at 13.683 kb on + strand, within EX31_RS16650 at 13.734 kb on - strand, within EX31_RS16650 at 13.844 kb on + strand, within EX31_RS16650 at 13.845 kb on - strand, within EX31_RS16650 at 14.025 kb on + strand, within EX31_RS16650 at 14.025 kb on + strand, within EX31_RS16650 at 14.035 kb on + strand, within EX31_RS16650 at 14.035 kb on + strand, within EX31_RS16650 at 14.071 kb on + strand, within EX31_RS16650 at 14.472 kb on + strand at 14.688 kb on + strand, within EX31_RS16655 at 14.689 kb on - strand, within EX31_RS16655 at 14.776 kb on + strand, within EX31_RS16655 at 15.027 kb on + strand at 15.028 kb on - strand at 15.150 kb on + strand at 15.277 kb on + strand, within EX31_RS16660 at 15.349 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.389 kb on - strand, within EX31_RS16660 at 15.398 kb on + strand, within EX31_RS16660 at 15.398 kb on + strand, within EX31_RS16660 at 15.398 kb on + strand, within EX31_RS16660 at 15.398 kb on + strand, within EX31_RS16660 at 15.398 kb on + strand, within EX31_RS16660 at 15.487 kb on + strand, within EX31_RS16660 at 15.511 kb on + strand, within EX31_RS16660 at 15.539 kb on + strand, within EX31_RS16660 at 15.600 kb on + strand, within EX31_RS16660
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking remove 13,683 + EX31_RS16650 0.53 +0.9 13,683 + EX31_RS16650 0.53 +1.1 13,734 - EX31_RS16650 0.56 +0.2 13,844 + EX31_RS16650 0.62 +0.6 13,845 - EX31_RS16650 0.62 +0.2 14,025 + EX31_RS16650 0.72 -0.2 14,025 + EX31_RS16650 0.72 -0.0 14,035 + EX31_RS16650 0.73 -1.0 14,035 + EX31_RS16650 0.73 +0.3 14,071 + EX31_RS16650 0.75 +0.1 14,472 + +0.2 14,688 + EX31_RS16655 0.27 -2.9 14,689 - EX31_RS16655 0.27 -0.2 14,776 + EX31_RS16655 0.47 -0.8 15,027 + -1.0 15,028 - -0.2 15,150 + -0.6 15,277 + EX31_RS16660 0.12 -0.2 15,349 + EX31_RS16660 0.24 +0.2 15,388 + EX31_RS16660 0.31 +0.1 15,388 + EX31_RS16660 0.31 +1.1 15,388 + EX31_RS16660 0.31 +0.5 15,388 + EX31_RS16660 0.31 -0.2 15,388 + EX31_RS16660 0.31 +1.2 15,388 + EX31_RS16660 0.31 -0.1 15,388 + EX31_RS16660 0.31 -1.6 15,388 + EX31_RS16660 0.31 +0.2 15,389 - EX31_RS16660 0.31 -1.4 15,398 + EX31_RS16660 0.32 -1.0 15,398 + EX31_RS16660 0.32 +0.8 15,398 + EX31_RS16660 0.32 +0.1 15,398 + EX31_RS16660 0.32 -0.2 15,398 + EX31_RS16660 0.32 -0.7 15,487 + EX31_RS16660 0.47 +0.9 15,511 + EX31_RS16660 0.52 +0.7 15,539 + EX31_RS16660 0.56 -0.8 15,600 + EX31_RS16660 0.67 +0.1
Or see this region's nucleotide sequence