Strain Fitness in Rahnella sp. WP5 around EX31_RS01830

Experiment: L-Serine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01825 and EX31_RS25090 are separated by 337 nucleotidesEX31_RS25090 and EX31_RS01830 are separated by 299 nucleotidesEX31_RS01830 and EX31_RS01835 are separated by 146 nucleotides EX31_RS01825: EX31_RS01825 - tannase/feruloyl esterase family alpha/beta hydrolase, at 389,873 to 391,471 _RS01825 EX31_RS25090: EX31_RS25090 - YhfL family protein, at 391,809 to 391,976 _RS25090 EX31_RS01830: EX31_RS01830 - 5-histidylcysteine sulfoxide synthase, at 392,276 to 394,417 _RS01830 EX31_RS01835: EX31_RS01835 - site-specific integrase, at 394,564 to 395,688 _RS01835 Position (kb) 392 393 394 395Strain fitness (log2 ratio) -2 -1 0 1 2 3at 391.500 kb on - strandat 391.500 kb on - strandat 391.500 kb on - strandat 391.517 kb on - strandat 391.517 kb on - strandat 391.732 kb on + strandat 391.781 kb on + strandat 392.090 kb on + strandat 392.241 kb on + strandat 392.269 kb on - strandat 392.278 kb on - strandat 392.297 kb on - strandat 392.312 kb on - strandat 392.312 kb on - strandat 392.420 kb on - strandat 392.511 kb on - strand, within EX31_RS01830at 392.539 kb on + strand, within EX31_RS01830at 392.540 kb on - strand, within EX31_RS01830at 392.540 kb on - strand, within EX31_RS01830at 392.585 kb on - strand, within EX31_RS01830at 392.607 kb on - strand, within EX31_RS01830at 392.607 kb on - strand, within EX31_RS01830at 392.681 kb on - strand, within EX31_RS01830at 392.738 kb on + strand, within EX31_RS01830at 392.977 kb on - strand, within EX31_RS01830at 392.977 kb on - strand, within EX31_RS01830at 392.977 kb on - strand, within EX31_RS01830at 393.155 kb on - strand, within EX31_RS01830at 393.187 kb on - strand, within EX31_RS01830at 393.189 kb on - strand, within EX31_RS01830at 393.325 kb on + strand, within EX31_RS01830at 393.470 kb on - strand, within EX31_RS01830at 393.650 kb on - strand, within EX31_RS01830at 393.686 kb on - strand, within EX31_RS01830at 393.727 kb on - strand, within EX31_RS01830at 393.748 kb on + strand, within EX31_RS01830at 393.748 kb on + strand, within EX31_RS01830at 393.749 kb on - strand, within EX31_RS01830at 393.796 kb on + strand, within EX31_RS01830at 393.797 kb on - strand, within EX31_RS01830at 393.802 kb on + strand, within EX31_RS01830at 393.897 kb on - strand, within EX31_RS01830at 393.897 kb on - strand, within EX31_RS01830at 393.897 kb on - strand, within EX31_RS01830at 394.000 kb on + strand, within EX31_RS01830at 394.001 kb on - strand, within EX31_RS01830at 394.023 kb on - strand, within EX31_RS01830at 394.023 kb on - strand, within EX31_RS01830at 394.067 kb on - strand, within EX31_RS01830at 394.067 kb on - strand, within EX31_RS01830at 394.069 kb on - strand, within EX31_RS01830at 394.069 kb on - strand, within EX31_RS01830at 394.178 kb on - strand, within EX31_RS01830at 394.180 kb on + strand, within EX31_RS01830at 394.181 kb on - strand, within EX31_RS01830at 394.315 kb on - strandat 394.422 kb on - strandat 394.463 kb on + strandat 394.512 kb on - strandat 394.514 kb on - strandat 394.514 kb on - strandat 394.557 kb on - strandat 394.669 kb on - strandat 394.669 kb on - strandat 394.669 kb on - strandat 394.728 kb on - strand, within EX31_RS01835at 394.728 kb on - strand, within EX31_RS01835at 394.728 kb on - strand, within EX31_RS01835at 394.761 kb on + strand, within EX31_RS01835at 394.839 kb on + strand, within EX31_RS01835at 394.839 kb on + strand, within EX31_RS01835at 394.840 kb on - strand, within EX31_RS01835at 394.873 kb on + strand, within EX31_RS01835at 394.874 kb on - strand, within EX31_RS01835at 394.885 kb on + strand, within EX31_RS01835at 394.976 kb on - strand, within EX31_RS01835at 395.041 kb on - strand, within EX31_RS01835at 395.275 kb on - strand, within EX31_RS01835at 395.278 kb on + strand, within EX31_RS01835at 395.278 kb on + strand, within EX31_RS01835at 395.279 kb on - strand, within EX31_RS01835at 395.279 kb on - strand, within EX31_RS01835at 395.298 kb on - strand, within EX31_RS01835at 395.298 kb on - strand, within EX31_RS01835at 395.332 kb on - strand, within EX31_RS01835at 395.332 kb on - strand, within EX31_RS01835at 395.332 kb on - strand, within EX31_RS01835at 395.332 kb on - strand, within EX31_RS01835at 395.383 kb on + strand, within EX31_RS01835at 395.389 kb on - strand, within EX31_RS01835at 395.389 kb on - strand, within EX31_RS01835

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking
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391,500 - +1.6
391,500 - +0.6
391,500 - +0.7
391,517 - +1.0
391,517 - +1.5
391,732 + -1.1
391,781 + -0.4
392,090 + -0.3
392,241 + -0.4
392,269 - +0.2
392,278 - +0.2
392,297 - -0.4
392,312 - -0.6
392,312 - +2.4
392,420 - +1.9
392,511 - EX31_RS01830 0.11 +2.3
392,539 + EX31_RS01830 0.12 -0.1
392,540 - EX31_RS01830 0.12 +1.3
392,540 - EX31_RS01830 0.12 -0.3
392,585 - EX31_RS01830 0.14 -0.9
392,607 - EX31_RS01830 0.15 +1.2
392,607 - EX31_RS01830 0.15 -0.1
392,681 - EX31_RS01830 0.19 +0.9
392,738 + EX31_RS01830 0.22 +0.6
392,977 - EX31_RS01830 0.33 +1.2
392,977 - EX31_RS01830 0.33 +0.4
392,977 - EX31_RS01830 0.33 +1.4
393,155 - EX31_RS01830 0.41 +1.5
393,187 - EX31_RS01830 0.43 +0.5
393,189 - EX31_RS01830 0.43 +0.1
393,325 + EX31_RS01830 0.49 +0.1
393,470 - EX31_RS01830 0.56 +3.5
393,650 - EX31_RS01830 0.64 -0.1
393,686 - EX31_RS01830 0.66 +1.4
393,727 - EX31_RS01830 0.68 +1.2
393,748 + EX31_RS01830 0.69 +0.5
393,748 + EX31_RS01830 0.69 -1.6
393,749 - EX31_RS01830 0.69 +0.9
393,796 + EX31_RS01830 0.71 +0.5
393,797 - EX31_RS01830 0.71 +0.9
393,802 + EX31_RS01830 0.71 -0.8
393,897 - EX31_RS01830 0.76 -0.6
393,897 - EX31_RS01830 0.76 +2.4
393,897 - EX31_RS01830 0.76 +0.1
394,000 + EX31_RS01830 0.80 +1.9
394,001 - EX31_RS01830 0.81 +1.8
394,023 - EX31_RS01830 0.82 -0.2
394,023 - EX31_RS01830 0.82 +1.7
394,067 - EX31_RS01830 0.84 +1.6
394,067 - EX31_RS01830 0.84 -0.2
394,069 - EX31_RS01830 0.84 +0.4
394,069 - EX31_RS01830 0.84 +0.9
394,178 - EX31_RS01830 0.89 -0.0
394,180 + EX31_RS01830 0.89 -0.1
394,181 - EX31_RS01830 0.89 +1.4
394,315 - +0.7
394,422 - +0.3
394,463 + -1.8
394,512 - -0.4
394,514 - -0.1
394,514 - +0.4
394,557 - -0.9
394,669 - -0.2
394,669 - +0.9
394,669 - +0.6
394,728 - EX31_RS01835 0.15 +1.2
394,728 - EX31_RS01835 0.15 +0.8
394,728 - EX31_RS01835 0.15 +0.7
394,761 + EX31_RS01835 0.18 -0.4
394,839 + EX31_RS01835 0.24 +0.3
394,839 + EX31_RS01835 0.24 +0.4
394,840 - EX31_RS01835 0.25 -2.2
394,873 + EX31_RS01835 0.27 -1.0
394,874 - EX31_RS01835 0.28 +0.5
394,885 + EX31_RS01835 0.29 -0.4
394,976 - EX31_RS01835 0.37 -0.1
395,041 - EX31_RS01835 0.42 -0.1
395,275 - EX31_RS01835 0.63 +0.5
395,278 + EX31_RS01835 0.63 -0.1
395,278 + EX31_RS01835 0.63 +0.1
395,279 - EX31_RS01835 0.64 -0.9
395,279 - EX31_RS01835 0.64 +0.9
395,298 - EX31_RS01835 0.65 -0.2
395,298 - EX31_RS01835 0.65 +1.2
395,332 - EX31_RS01835 0.68 -0.4
395,332 - EX31_RS01835 0.68 +1.1
395,332 - EX31_RS01835 0.68 +0.9
395,332 - EX31_RS01835 0.68 +1.6
395,383 + EX31_RS01835 0.73 -0.4
395,389 - EX31_RS01835 0.73 -0.8
395,389 - EX31_RS01835 0.73 +1.9

Or see this region's nucleotide sequence