Strain Fitness in Rahnella sp. WP5 around EX31_RS00925

Experiment: L-Serine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00915 and EX31_RS00920 are separated by 136 nucleotidesEX31_RS00920 and EX31_RS00925 overlap by 14 nucleotidesEX31_RS00925 and EX31_RS00930 are separated by 77 nucleotides EX31_RS00915: EX31_RS00915 - aldo/keto reductase family oxidoreductase, at 199,325 to 200,185 _RS00915 EX31_RS00920: EX31_RS00920 - DUF1493 family protein, at 200,322 to 200,678 _RS00920 EX31_RS00925: EX31_RS00925 - glycosyltransferase family 9 protein, at 200,665 to 201,747 _RS00925 EX31_RS00930: EX31_RS00930 - glycosyltransferase family 9 protein, at 201,825 to 202,844 _RS00930 Position (kb) 200 201 202Strain fitness (log2 ratio) -2 -1 0 1 2 3at 199.706 kb on + strand, within EX31_RS00915at 199.706 kb on + strand, within EX31_RS00915at 199.706 kb on + strand, within EX31_RS00915at 199.706 kb on + strand, within EX31_RS00915at 199.706 kb on + strand, within EX31_RS00915at 199.706 kb on + strand, within EX31_RS00915at 199.707 kb on - strand, within EX31_RS00915at 199.707 kb on - strand, within EX31_RS00915at 199.707 kb on - strand, within EX31_RS00915at 199.707 kb on - strand, within EX31_RS00915at 199.708 kb on + strand, within EX31_RS00915at 199.709 kb on - strand, within EX31_RS00915at 199.849 kb on + strand, within EX31_RS00915at 199.850 kb on - strand, within EX31_RS00915at 199.984 kb on + strand, within EX31_RS00915at 199.985 kb on - strand, within EX31_RS00915at 199.985 kb on - strand, within EX31_RS00915at 200.030 kb on - strand, within EX31_RS00915at 200.132 kb on + strandat 200.164 kb on - strandat 200.218 kb on - strandat 200.500 kb on - strand, within EX31_RS00920at 200.545 kb on - strand, within EX31_RS00920at 200.565 kb on + strand, within EX31_RS00920at 200.594 kb on + strand, within EX31_RS00920at 200.595 kb on - strand, within EX31_RS00920at 200.678 kb on + strandat 200.679 kb on - strandat 200.679 kb on - strandat 200.679 kb on - strandat 200.711 kb on + strandat 200.779 kb on - strand, within EX31_RS00925at 200.781 kb on + strand, within EX31_RS00925at 200.781 kb on + strand, within EX31_RS00925at 200.781 kb on + strand, within EX31_RS00925at 200.782 kb on - strand, within EX31_RS00925at 200.814 kb on - strand, within EX31_RS00925at 200.847 kb on + strand, within EX31_RS00925at 200.848 kb on - strand, within EX31_RS00925at 200.851 kb on + strand, within EX31_RS00925at 200.872 kb on - strand, within EX31_RS00925at 200.876 kb on - strand, within EX31_RS00925at 200.876 kb on - strand, within EX31_RS00925at 200.966 kb on - strand, within EX31_RS00925at 200.967 kb on + strand, within EX31_RS00925at 200.968 kb on - strand, within EX31_RS00925at 200.968 kb on - strand, within EX31_RS00925at 200.968 kb on - strand, within EX31_RS00925at 200.968 kb on - strand, within EX31_RS00925at 201.071 kb on - strand, within EX31_RS00925at 201.079 kb on - strand, within EX31_RS00925at 201.265 kb on - strand, within EX31_RS00925at 201.296 kb on - strand, within EX31_RS00925at 201.481 kb on - strand, within EX31_RS00925at 201.503 kb on + strand, within EX31_RS00925at 201.629 kb on + strand, within EX31_RS00925at 201.879 kb on - strandat 201.977 kb on + strand, within EX31_RS00930at 202.047 kb on + strand, within EX31_RS00930at 202.048 kb on - strand, within EX31_RS00930at 202.113 kb on - strand, within EX31_RS00930at 202.115 kb on + strand, within EX31_RS00930at 202.115 kb on + strand, within EX31_RS00930at 202.118 kb on + strand, within EX31_RS00930at 202.141 kb on + strand, within EX31_RS00930at 202.142 kb on - strand, within EX31_RS00930at 202.171 kb on + strand, within EX31_RS00930at 202.172 kb on - strand, within EX31_RS00930at 202.179 kb on - strand, within EX31_RS00930at 202.309 kb on + strand, within EX31_RS00930at 202.311 kb on + strand, within EX31_RS00930at 202.312 kb on - strand, within EX31_RS00930at 202.378 kb on - strand, within EX31_RS00930at 202.446 kb on - strand, within EX31_RS00930at 202.466 kb on - strand, within EX31_RS00930at 202.471 kb on - strand, within EX31_RS00930at 202.682 kb on + strand, within EX31_RS00930

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking
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199,706 + EX31_RS00915 0.44 +1.0
199,706 + EX31_RS00915 0.44 +0.9
199,706 + EX31_RS00915 0.44 +0.4
199,706 + EX31_RS00915 0.44 +0.6
199,706 + EX31_RS00915 0.44 +0.6
199,706 + EX31_RS00915 0.44 +0.3
199,707 - EX31_RS00915 0.44 +0.7
199,707 - EX31_RS00915 0.44 +0.7
199,707 - EX31_RS00915 0.44 -0.4
199,707 - EX31_RS00915 0.44 +0.4
199,708 + EX31_RS00915 0.44 -1.3
199,709 - EX31_RS00915 0.45 +0.5
199,849 + EX31_RS00915 0.61 -1.4
199,850 - EX31_RS00915 0.61 -0.7
199,984 + EX31_RS00915 0.77 +0.9
199,985 - EX31_RS00915 0.77 +0.3
199,985 - EX31_RS00915 0.77 -0.7
200,030 - EX31_RS00915 0.82 +0.3
200,132 + +0.8
200,164 - +2.5
200,218 - -0.5
200,500 - EX31_RS00920 0.50 +1.1
200,545 - EX31_RS00920 0.62 -0.5
200,565 + EX31_RS00920 0.68 -1.7
200,594 + EX31_RS00920 0.76 -1.2
200,595 - EX31_RS00920 0.76 +1.2
200,678 + -0.8
200,679 - -0.5
200,679 - +1.9
200,679 - -0.7
200,711 + -1.2
200,779 - EX31_RS00925 0.11 -0.3
200,781 + EX31_RS00925 0.11 +0.6
200,781 + EX31_RS00925 0.11 +0.9
200,781 + EX31_RS00925 0.11 -0.7
200,782 - EX31_RS00925 0.11 -0.1
200,814 - EX31_RS00925 0.14 +1.7
200,847 + EX31_RS00925 0.17 +0.6
200,848 - EX31_RS00925 0.17 +0.4
200,851 + EX31_RS00925 0.17 +1.2
200,872 - EX31_RS00925 0.19 +0.9
200,876 - EX31_RS00925 0.19 -0.1
200,876 - EX31_RS00925 0.19 -0.4
200,966 - EX31_RS00925 0.28 -2.0
200,967 + EX31_RS00925 0.28 +0.4
200,968 - EX31_RS00925 0.28 +1.0
200,968 - EX31_RS00925 0.28 +0.2
200,968 - EX31_RS00925 0.28 -0.1
200,968 - EX31_RS00925 0.28 +2.6
201,071 - EX31_RS00925 0.37 -0.7
201,079 - EX31_RS00925 0.38 +1.4
201,265 - EX31_RS00925 0.55 +1.7
201,296 - EX31_RS00925 0.58 +1.3
201,481 - EX31_RS00925 0.75 -1.8
201,503 + EX31_RS00925 0.77 -2.2
201,629 + EX31_RS00925 0.89 -0.1
201,879 - +1.2
201,977 + EX31_RS00930 0.15 -0.1
202,047 + EX31_RS00930 0.22 +0.9
202,048 - EX31_RS00930 0.22 +0.0
202,113 - EX31_RS00930 0.28 +0.4
202,115 + EX31_RS00930 0.28 +0.1
202,115 + EX31_RS00930 0.28 +0.7
202,118 + EX31_RS00930 0.29 +1.1
202,141 + EX31_RS00930 0.31 -1.4
202,142 - EX31_RS00930 0.31 -0.2
202,171 + EX31_RS00930 0.34 +1.5
202,172 - EX31_RS00930 0.34 +0.9
202,179 - EX31_RS00930 0.35 -0.1
202,309 + EX31_RS00930 0.47 +1.3
202,311 + EX31_RS00930 0.48 -0.1
202,312 - EX31_RS00930 0.48 +0.6
202,378 - EX31_RS00930 0.54 +0.3
202,446 - EX31_RS00930 0.61 +0.7
202,466 - EX31_RS00930 0.63 +0.1
202,471 - EX31_RS00930 0.63 +2.9
202,682 + EX31_RS00930 0.84 -0.9

Or see this region's nucleotide sequence