Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03929 and CCNA_00718 are separated by 52 nucleotides CCNA_00718 and CCNA_03930 are separated by 6 nucleotides CCNA_03930 and CCNA_03931 are separated by 542 nucleotides CCNA_03931 and CCNA_03932 are separated by 2 nucleotides
CCNA_03929: CCNA_03929 - hypothetical protein, at 771,721 to 771,834
_03929
CCNA_00718: CCNA_00718 - abortive infection protein, at 771,887 to 772,783
_00718
CCNA_03930: CCNA_03930 - hypothetical protein, at 772,790 to 772,894
_03930
CCNA_03931: CCNA_03931 - hypothetical protein, at 773,437 to 773,730
_03931
CCNA_03932: CCNA_03932 - hypothetical protein, at 773,733 to 773,987
_03932
Position (kb) 772
773 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 771.806 kb on + strand, within CCNA_03929 at 771.810 kb on - strand, within CCNA_03929 at 771.840 kb on - strand at 771.852 kb on + strand at 771.869 kb on - strand at 771.875 kb on + strand at 771.886 kb on + strand at 771.893 kb on - strand at 771.893 kb on - strand at 771.901 kb on - strand at 771.913 kb on + strand at 771.921 kb on - strand at 771.940 kb on - strand at 771.962 kb on - strand at 771.962 kb on - strand at 771.963 kb on - strand at 771.976 kb on + strand at 771.984 kb on - strand, within CCNA_00718 at 771.984 kb on - strand, within CCNA_00718 at 771.984 kb on - strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.007 kb on + strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.020 kb on - strand, within CCNA_00718 at 772.066 kb on + strand, within CCNA_00718 at 772.100 kb on + strand, within CCNA_00718 at 772.107 kb on - strand, within CCNA_00718 at 772.115 kb on + strand, within CCNA_00718 at 772.130 kb on + strand, within CCNA_00718 at 772.130 kb on + strand, within CCNA_00718 at 772.130 kb on + strand, within CCNA_00718 at 772.130 kb on + strand, within CCNA_00718 at 772.169 kb on - strand, within CCNA_00718 at 772.212 kb on + strand, within CCNA_00718 at 772.218 kb on - strand, within CCNA_00718 at 772.218 kb on - strand, within CCNA_00718 at 772.218 kb on - strand, within CCNA_00718 at 772.229 kb on + strand, within CCNA_00718 at 772.285 kb on + strand, within CCNA_00718 at 772.341 kb on - strand, within CCNA_00718 at 772.355 kb on - strand, within CCNA_00718 at 772.355 kb on - strand, within CCNA_00718 at 772.356 kb on + strand, within CCNA_00718 at 772.358 kb on + strand, within CCNA_00718 at 772.366 kb on + strand, within CCNA_00718 at 772.389 kb on - strand, within CCNA_00718 at 772.389 kb on - strand, within CCNA_00718 at 772.389 kb on - strand, within CCNA_00718 at 772.390 kb on - strand, within CCNA_00718 at 772.432 kb on - strand, within CCNA_00718 at 772.432 kb on - strand, within CCNA_00718 at 772.432 kb on - strand, within CCNA_00718 at 772.447 kb on + strand, within CCNA_00718 at 772.447 kb on + strand, within CCNA_00718 at 772.455 kb on - strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.471 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.565 kb on + strand, within CCNA_00718 at 772.631 kb on + strand, within CCNA_00718 at 772.639 kb on - strand, within CCNA_00718 at 772.646 kb on - strand, within CCNA_00718 at 772.646 kb on - strand at 772.690 kb on + strand, within CCNA_00718 at 772.698 kb on - strand at 772.698 kb on - strand at 772.711 kb on - strand at 772.711 kb on - strand at 772.747 kb on + strand at 772.752 kb on + strand at 772.795 kb on - strand at 772.795 kb on - strand at 772.795 kb on - strand at 772.795 kb on - strand at 772.808 kb on - strand, within CCNA_03930 at 772.812 kb on + strand, within CCNA_03930 at 772.842 kb on + strand, within CCNA_03930 at 772.847 kb on + strand, within CCNA_03930 at 772.850 kb on - strand, within CCNA_03930 at 772.852 kb on + strand at 772.860 kb on - strand, within CCNA_03930 at 772.860 kb on - strand, within CCNA_03930 at 772.866 kb on + strand, within CCNA_03930 at 772.869 kb on - strand, within CCNA_03930 at 772.874 kb on - strand, within CCNA_03930 at 772.874 kb on - strand, within CCNA_03930 at 772.897 kb on - strand at 772.956 kb on + strand at 772.956 kb on + strand at 772.964 kb on - strand at 772.969 kb on + strand at 772.985 kb on + strand at 772.985 kb on + strand at 772.991 kb on + strand at 772.991 kb on + strand at 772.991 kb on + strand at 772.999 kb on - strand at 772.999 kb on - strand at 772.999 kb on - strand at 772.999 kb on - strand at 773.010 kb on - strand at 773.030 kb on - strand at 773.076 kb on - strand at 773.080 kb on + strand at 773.094 kb on + strand at 773.095 kb on - strand at 773.101 kb on - strand at 773.102 kb on - strand at 773.102 kb on - strand at 773.102 kb on - strand at 773.118 kb on - strand at 773.120 kb on + strand at 773.126 kb on - strand at 773.126 kb on - strand at 773.128 kb on - strand at 773.161 kb on + strand at 773.184 kb on - strand at 773.192 kb on + strand at 773.193 kb on + strand at 773.193 kb on + strand at 773.202 kb on - strand at 773.202 kb on - strand at 773.213 kb on + strand at 773.213 kb on + strand at 773.221 kb on - strand at 773.221 kb on - strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.256 kb on - strand at 773.256 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.268 kb on - strand at 773.269 kb on - strand at 773.270 kb on + strand at 773.270 kb on + strand at 773.271 kb on + strand at 773.278 kb on - strand at 773.279 kb on - strand at 773.279 kb on - strand at 773.309 kb on - strand at 773.309 kb on - strand at 773.309 kb on - strand at 773.732 kb on + strand at 773.732 kb on + strand at 773.740 kb on - strand at 773.740 kb on - strand at 773.740 kb on - strand at 773.742 kb on + strand at 773.749 kb on + strand at 773.767 kb on - strand, within CCNA_03932 at 773.791 kb on - strand, within CCNA_03932 at 773.793 kb on + strand, within CCNA_03932 at 773.793 kb on + strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.828 kb on + strand, within CCNA_03932 at 773.833 kb on + strand, within CCNA_03932 at 773.841 kb on - strand, within CCNA_03932 at 773.851 kb on - strand, within CCNA_03932 at 773.870 kb on - strand, within CCNA_03932 at 773.891 kb on + strand, within CCNA_03932
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 771,806 + CCNA_03929 0.75 +0.4 771,810 - CCNA_03929 0.78 +0.6 771,840 - +0.8 771,852 + +0.3 771,869 - +0.6 771,875 + +0.5 771,886 + -1.3 771,893 - +0.3 771,893 - +0.7 771,901 - -0.0 771,913 + -0.1 771,921 - -0.0 771,940 - +0.3 771,962 - +0.3 771,962 - +0.6 771,963 - -0.2 771,976 + -0.0 771,984 - CCNA_00718 0.11 -1.1 771,984 - CCNA_00718 0.11 +0.9 771,984 - CCNA_00718 0.11 +0.9 772,005 + CCNA_00718 0.13 -1.0 772,005 + CCNA_00718 0.13 +1.5 772,005 + CCNA_00718 0.13 +1.0 772,005 + CCNA_00718 0.13 -0.6 772,005 + CCNA_00718 0.13 -2.4 772,005 + CCNA_00718 0.13 +1.6 772,007 + CCNA_00718 0.13 -0.6 772,013 - CCNA_00718 0.14 +0.6 772,013 - CCNA_00718 0.14 -0.2 772,013 - CCNA_00718 0.14 -0.6 772,013 - CCNA_00718 0.14 +0.2 772,013 - CCNA_00718 0.14 +0.8 772,013 - CCNA_00718 0.14 +0.7 772,013 - CCNA_00718 0.14 +1.3 772,013 - CCNA_00718 0.14 +0.6 772,020 - CCNA_00718 0.15 -0.2 772,066 + CCNA_00718 0.20 -1.7 772,100 + CCNA_00718 0.24 -1.4 772,107 - CCNA_00718 0.25 -0.0 772,115 + CCNA_00718 0.25 -1.9 772,130 + CCNA_00718 0.27 +0.8 772,130 + CCNA_00718 0.27 -0.5 772,130 + CCNA_00718 0.27 -1.5 772,130 + CCNA_00718 0.27 -2.0 772,169 - CCNA_00718 0.31 +0.1 772,212 + CCNA_00718 0.36 -0.0 772,218 - CCNA_00718 0.37 +0.7 772,218 - CCNA_00718 0.37 +0.9 772,218 - CCNA_00718 0.37 -0.2 772,229 + CCNA_00718 0.38 -2.0 772,285 + CCNA_00718 0.44 -2.5 772,341 - CCNA_00718 0.51 +0.4 772,355 - CCNA_00718 0.52 -1.0 772,355 - CCNA_00718 0.52 -0.9 772,356 + CCNA_00718 0.52 -0.4 772,358 + CCNA_00718 0.53 +0.5 772,366 + CCNA_00718 0.53 -0.3 772,389 - CCNA_00718 0.56 +0.6 772,389 - CCNA_00718 0.56 -0.8 772,389 - CCNA_00718 0.56 +0.1 772,390 - CCNA_00718 0.56 +0.5 772,432 - CCNA_00718 0.61 +1.1 772,432 - CCNA_00718 0.61 -0.3 772,432 - CCNA_00718 0.61 -0.6 772,447 + CCNA_00718 0.62 -2.2 772,447 + CCNA_00718 0.62 -0.6 772,455 - CCNA_00718 0.63 +0.6 772,468 + CCNA_00718 0.65 -2.5 772,468 + CCNA_00718 0.65 -1.6 772,468 + CCNA_00718 0.65 -0.7 772,468 + CCNA_00718 0.65 -1.4 772,468 + CCNA_00718 0.65 -1.5 772,468 + CCNA_00718 0.65 -0.6 772,468 + CCNA_00718 0.65 -1.7 772,471 - CCNA_00718 0.65 +1.5 772,476 - CCNA_00718 0.66 +0.8 772,476 - CCNA_00718 0.66 +0.2 772,476 - CCNA_00718 0.66 +1.6 772,476 - CCNA_00718 0.66 +0.3 772,476 - CCNA_00718 0.66 +0.4 772,476 - CCNA_00718 0.66 -0.1 772,476 - CCNA_00718 0.66 +0.8 772,476 - CCNA_00718 0.66 -0.8 772,565 + CCNA_00718 0.76 -3.6 772,631 + CCNA_00718 0.83 +0.7 772,639 - CCNA_00718 0.84 -0.4 772,646 - CCNA_00718 0.85 +1.1 772,646 - +2.6 772,690 + CCNA_00718 0.90 -2.0 772,698 - +0.5 772,698 - -0.1 772,711 - +0.5 772,711 - +0.8 772,747 + -0.2 772,752 + +0.2 772,795 - +0.7 772,795 - +0.4 772,795 - +0.2 772,795 - +0.4 772,808 - CCNA_03930 0.17 +1.2 772,812 + CCNA_03930 0.21 -1.6 772,842 + CCNA_03930 0.50 -1.3 772,847 + CCNA_03930 0.54 -0.0 772,850 - CCNA_03930 0.57 +0.5 772,852 + +2.6 772,860 - CCNA_03930 0.67 +1.7 772,860 - CCNA_03930 0.67 +0.6 772,866 + CCNA_03930 0.72 -0.6 772,869 - CCNA_03930 0.75 +1.8 772,874 - CCNA_03930 0.80 +0.1 772,874 - CCNA_03930 0.80 +0.7 772,897 - +1.0 772,956 + +0.9 772,956 + +1.2 772,964 - +0.2 772,969 + +0.5 772,985 + +1.2 772,985 + -1.2 772,991 + +1.2 772,991 + +1.0 772,991 + +0.5 772,999 - +0.7 772,999 - +0.9 772,999 - -0.0 772,999 - +0.6 773,010 - +0.9 773,030 - +0.5 773,076 - +0.8 773,080 + +2.0 773,094 + +0.0 773,095 - +1.7 773,101 - +1.3 773,102 - +1.2 773,102 - +0.3 773,102 - +1.2 773,118 - +0.5 773,120 + +0.2 773,126 - +1.3 773,126 - -0.3 773,128 - +0.8 773,161 + +2.2 773,184 - +1.5 773,192 + +0.4 773,193 + +0.2 773,193 + -0.1 773,202 - +1.0 773,202 - +0.3 773,213 + -1.1 773,213 + -1.0 773,221 - +1.2 773,221 - +1.2 773,248 + -0.8 773,248 + +0.4 773,248 + +1.3 773,248 + -0.0 773,249 + -0.3 773,249 + -0.7 773,249 + -0.9 773,249 + -0.2 773,249 + +1.0 773,256 - +1.4 773,256 - +1.3 773,257 - +1.2 773,257 - +1.1 773,257 - +1.1 773,257 - +1.2 773,257 - -0.6 773,257 - +1.7 773,257 - +1.1 773,257 - +1.0 773,268 - -0.1 773,269 - +1.2 773,270 + +0.5 773,270 + +1.2 773,271 + -1.1 773,278 - +1.3 773,279 - +1.0 773,279 - +2.0 773,309 - +1.3 773,309 - +0.4 773,309 - +0.7 773,732 + -2.1 773,732 + -2.3 773,740 - +0.5 773,740 - +1.2 773,740 - +1.1 773,742 + -3.4 773,749 + -3.5 773,767 - CCNA_03932 0.13 -3.1 773,791 - CCNA_03932 0.23 +1.0 773,793 + CCNA_03932 0.24 -1.1 773,793 + CCNA_03932 0.24 -1.3 773,801 - CCNA_03932 0.27 -1.3 773,801 - CCNA_03932 0.27 -4.0 773,801 - CCNA_03932 0.27 -1.9 773,801 - CCNA_03932 0.27 -2.5 773,801 - CCNA_03932 0.27 -3.4 773,828 + CCNA_03932 0.37 -2.4 773,833 + CCNA_03932 0.39 -2.0 773,841 - CCNA_03932 0.42 -2.3 773,851 - CCNA_03932 0.46 -2.5 773,870 - CCNA_03932 0.54 -1.5 773,891 + CCNA_03932 0.62 -3.6
Or see this region's nucleotide sequence