Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02594 and CCNA_02595 are separated by 9 nucleotides CCNA_02595 and CCNA_02596 are separated by 264 nucleotides
CCNA_02594: CCNA_02594 - heat shock endopeptidase HtpX, at 2,742,178 to 2,743,128
_02594
CCNA_02595: CCNA_02595 - Zn finger TFIIB-family transcription factor, at 2,743,138 to 2,743,458
_02595
CCNA_02596: CCNA_02596 - SSU ribosomal protein S4P, at 2,743,723 to 2,744,340
_02596
Position (kb)
2743
2744 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2742.158 kb on + strand at 2742.158 kb on + strand at 2742.163 kb on + strand at 2742.166 kb on - strand at 2742.166 kb on - strand at 2742.171 kb on + strand at 2742.171 kb on + strand at 2742.179 kb on - strand at 2742.203 kb on + strand at 2742.216 kb on + strand at 2742.277 kb on + strand, within CCNA_02594 at 2742.295 kb on + strand, within CCNA_02594 at 2742.303 kb on - strand, within CCNA_02594 at 2742.314 kb on + strand, within CCNA_02594 at 2742.322 kb on - strand, within CCNA_02594 at 2742.338 kb on + strand, within CCNA_02594 at 2742.364 kb on + strand, within CCNA_02594 at 2742.372 kb on - strand, within CCNA_02594 at 2742.392 kb on + strand, within CCNA_02594 at 2742.402 kb on + strand, within CCNA_02594 at 2742.439 kb on - strand, within CCNA_02594 at 2742.448 kb on + strand, within CCNA_02594 at 2742.451 kb on - strand, within CCNA_02594 at 2742.456 kb on + strand, within CCNA_02594 at 2742.456 kb on - strand, within CCNA_02594 at 2742.489 kb on + strand, within CCNA_02594 at 2742.522 kb on - strand, within CCNA_02594 at 2742.522 kb on - strand, within CCNA_02594 at 2742.567 kb on + strand, within CCNA_02594 at 2742.586 kb on + strand, within CCNA_02594 at 2742.586 kb on + strand, within CCNA_02594 at 2742.586 kb on + strand, within CCNA_02594 at 2742.586 kb on + strand, within CCNA_02594 at 2742.591 kb on + strand, within CCNA_02594 at 2742.594 kb on - strand, within CCNA_02594 at 2742.594 kb on - strand, within CCNA_02594 at 2742.604 kb on + strand, within CCNA_02594 at 2742.660 kb on - strand, within CCNA_02594 at 2742.686 kb on + strand, within CCNA_02594 at 2742.686 kb on + strand, within CCNA_02594 at 2742.694 kb on - strand, within CCNA_02594 at 2742.694 kb on - strand, within CCNA_02594 at 2742.694 kb on - strand, within CCNA_02594 at 2742.696 kb on + strand, within CCNA_02594 at 2742.721 kb on - strand, within CCNA_02594 at 2742.726 kb on - strand, within CCNA_02594 at 2742.740 kb on + strand, within CCNA_02594 at 2742.827 kb on + strand at 2742.834 kb on - strand, within CCNA_02594 at 2742.835 kb on - strand, within CCNA_02594 at 2742.835 kb on - strand, within CCNA_02594 at 2742.835 kb on - strand, within CCNA_02594 at 2742.835 kb on - strand, within CCNA_02594 at 2742.957 kb on + strand, within CCNA_02594 at 2742.957 kb on + strand, within CCNA_02594 at 2743.019 kb on + strand, within CCNA_02594 at 2743.060 kb on - strand at 2743.073 kb on + strand at 2743.073 kb on + strand at 2743.073 kb on + strand at 2743.081 kb on - strand at 2743.081 kb on - strand at 2743.112 kb on - strand at 2743.190 kb on - strand, within CCNA_02595 at 2743.198 kb on - strand, within CCNA_02595 at 2743.216 kb on + strand, within CCNA_02595 at 2743.236 kb on + strand, within CCNA_02595 at 2743.244 kb on - strand, within CCNA_02595 at 2743.244 kb on - strand, within CCNA_02595 at 2743.244 kb on - strand, within CCNA_02595 at 2743.291 kb on - strand, within CCNA_02595 at 2743.291 kb on - strand, within CCNA_02595 at 2743.291 kb on - strand, within CCNA_02595 at 2743.291 kb on - strand, within CCNA_02595 at 2743.291 kb on - strand, within CCNA_02595 at 2743.294 kb on + strand, within CCNA_02595 at 2743.302 kb on - strand, within CCNA_02595 at 2743.349 kb on + strand, within CCNA_02595 at 2743.398 kb on + strand, within CCNA_02595 at 2743.418 kb on - strand, within CCNA_02595 at 2743.418 kb on - strand, within CCNA_02595 at 2743.443 kb on - strand at 2743.507 kb on - strand at 2743.608 kb on - strand at 2743.632 kb on - strand at 2743.648 kb on + strand at 2743.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,742,158 + -0.4 2,742,158 + -0.5 2,742,163 + -0.1 2,742,166 - +1.5 2,742,166 - +1.5 2,742,171 + +0.7 2,742,171 + -0.9 2,742,179 - +0.5 2,742,203 + -0.3 2,742,216 + -0.4 2,742,277 + CCNA_02594 0.10 +0.1 2,742,295 + CCNA_02594 0.12 -0.6 2,742,303 - CCNA_02594 0.13 -0.2 2,742,314 + CCNA_02594 0.14 -1.4 2,742,322 - CCNA_02594 0.15 -0.1 2,742,338 + CCNA_02594 0.17 -0.7 2,742,364 + CCNA_02594 0.20 -0.8 2,742,372 - CCNA_02594 0.20 +1.3 2,742,392 + CCNA_02594 0.23 +1.9 2,742,402 + CCNA_02594 0.24 +0.2 2,742,439 - CCNA_02594 0.27 +1.1 2,742,448 + CCNA_02594 0.28 -0.7 2,742,451 - CCNA_02594 0.29 +1.0 2,742,456 + CCNA_02594 0.29 -0.9 2,742,456 - CCNA_02594 0.29 -0.9 2,742,489 + CCNA_02594 0.33 -1.2 2,742,522 - CCNA_02594 0.36 +0.5 2,742,522 - CCNA_02594 0.36 +2.5 2,742,567 + CCNA_02594 0.41 -1.0 2,742,586 + CCNA_02594 0.43 -1.7 2,742,586 + CCNA_02594 0.43 +0.5 2,742,586 + CCNA_02594 0.43 +1.3 2,742,586 + CCNA_02594 0.43 +0.8 2,742,591 + CCNA_02594 0.43 -1.9 2,742,594 - CCNA_02594 0.44 +0.1 2,742,594 - CCNA_02594 0.44 +0.7 2,742,604 + CCNA_02594 0.45 +0.4 2,742,660 - CCNA_02594 0.51 +0.8 2,742,686 + CCNA_02594 0.53 +0.3 2,742,686 + CCNA_02594 0.53 -0.4 2,742,694 - CCNA_02594 0.54 -0.0 2,742,694 - CCNA_02594 0.54 +0.5 2,742,694 - CCNA_02594 0.54 +0.7 2,742,696 + CCNA_02594 0.54 +0.5 2,742,721 - CCNA_02594 0.57 -0.7 2,742,726 - CCNA_02594 0.58 +1.3 2,742,740 + CCNA_02594 0.59 +0.1 2,742,827 + +1.8 2,742,834 - CCNA_02594 0.69 +1.0 2,742,835 - CCNA_02594 0.69 +0.9 2,742,835 - CCNA_02594 0.69 -0.0 2,742,835 - CCNA_02594 0.69 +0.1 2,742,835 - CCNA_02594 0.69 +1.6 2,742,957 + CCNA_02594 0.82 +0.7 2,742,957 + CCNA_02594 0.82 +1.0 2,743,019 + CCNA_02594 0.88 -0.2 2,743,060 - +3.4 2,743,073 + -1.5 2,743,073 + -2.1 2,743,073 + -0.8 2,743,081 - +0.4 2,743,081 - +0.4 2,743,112 - +1.4 2,743,190 - CCNA_02595 0.16 +1.1 2,743,198 - CCNA_02595 0.19 +1.6 2,743,216 + CCNA_02595 0.24 +0.1 2,743,236 + CCNA_02595 0.31 -2.5 2,743,244 - CCNA_02595 0.33 +0.9 2,743,244 - CCNA_02595 0.33 +0.6 2,743,244 - CCNA_02595 0.33 +0.3 2,743,291 - CCNA_02595 0.48 +0.2 2,743,291 - CCNA_02595 0.48 +1.5 2,743,291 - CCNA_02595 0.48 +1.6 2,743,291 - CCNA_02595 0.48 +1.1 2,743,291 - CCNA_02595 0.48 +1.4 2,743,294 + CCNA_02595 0.49 +1.4 2,743,302 - CCNA_02595 0.51 +1.0 2,743,349 + CCNA_02595 0.66 +1.5 2,743,398 + CCNA_02595 0.81 +1.2 2,743,418 - CCNA_02595 0.87 +1.2 2,743,418 - CCNA_02595 0.87 +0.7 2,743,443 - +1.8 2,743,507 - +1.0 2,743,608 - +0.5 2,743,632 - +1.0 2,743,648 + +1.1 2,743,656 - +1.6
Or see this region's nucleotide sequence