Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02529 and CCNA_02530 are separated by 63 nucleotides CCNA_02530 and CCNA_02531 overlap by 4 nucleotides CCNA_02531 and CCNA_02532 are separated by 105 nucleotides
CCNA_02529: CCNA_02529 - DNA recombination-mediator protein A, SMF family, at 2,677,226 to 2,678,323
_02529
CCNA_02530: CCNA_02530 - SAM-dependent methyltransferase, at 2,678,387 to 2,679,592
_02530
CCNA_02531: CCNA_02531 - proline-rich hypothetical protein, at 2,679,589 to 2,680,371
_02531
CCNA_02532: CCNA_02532 - hypothetical protein, at 2,680,477 to 2,680,680
_02532
Position (kb)
2678
2679
2680 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2677.399 kb on + strand, within CCNA_02529 at 2677.440 kb on - strand, within CCNA_02529 at 2677.451 kb on - strand, within CCNA_02529 at 2677.460 kb on + strand, within CCNA_02529 at 2677.460 kb on + strand, within CCNA_02529 at 2677.468 kb on - strand, within CCNA_02529 at 2677.473 kb on + strand, within CCNA_02529 at 2677.498 kb on - strand, within CCNA_02529 at 2677.500 kb on + strand, within CCNA_02529 at 2677.576 kb on - strand, within CCNA_02529 at 2677.579 kb on + strand, within CCNA_02529 at 2677.670 kb on + strand, within CCNA_02529 at 2677.678 kb on - strand, within CCNA_02529 at 2677.741 kb on - strand, within CCNA_02529 at 2677.804 kb on + strand, within CCNA_02529 at 2677.854 kb on - strand, within CCNA_02529 at 2677.903 kb on - strand, within CCNA_02529 at 2677.914 kb on - strand, within CCNA_02529 at 2677.918 kb on + strand, within CCNA_02529 at 2677.919 kb on - strand, within CCNA_02529 at 2677.923 kb on + strand, within CCNA_02529 at 2677.933 kb on + strand, within CCNA_02529 at 2677.949 kb on - strand, within CCNA_02529 at 2677.963 kb on + strand, within CCNA_02529 at 2677.966 kb on - strand at 2677.974 kb on + strand, within CCNA_02529 at 2678.006 kb on + strand, within CCNA_02529 at 2678.016 kb on - strand, within CCNA_02529 at 2678.022 kb on - strand, within CCNA_02529 at 2678.032 kb on - strand, within CCNA_02529 at 2678.040 kb on + strand, within CCNA_02529 at 2678.058 kb on - strand, within CCNA_02529 at 2678.065 kb on - strand, within CCNA_02529 at 2678.087 kb on + strand, within CCNA_02529 at 2678.090 kb on - strand, within CCNA_02529 at 2678.099 kb on - strand, within CCNA_02529 at 2678.126 kb on + strand, within CCNA_02529 at 2678.157 kb on - strand, within CCNA_02529 at 2678.177 kb on + strand, within CCNA_02529 at 2678.182 kb on + strand, within CCNA_02529 at 2678.190 kb on - strand, within CCNA_02529 at 2678.190 kb on - strand, within CCNA_02529 at 2678.193 kb on + strand, within CCNA_02529 at 2678.193 kb on + strand, within CCNA_02529 at 2678.201 kb on - strand, within CCNA_02529 at 2678.210 kb on + strand, within CCNA_02529 at 2678.210 kb on + strand, within CCNA_02529 at 2678.210 kb on + strand, within CCNA_02529 at 2678.218 kb on - strand at 2678.260 kb on + strand at 2678.268 kb on - strand at 2678.272 kb on - strand at 2678.278 kb on - strand at 2678.315 kb on + strand at 2678.317 kb on + strand at 2678.317 kb on + strand at 2678.317 kb on + strand at 2678.325 kb on - strand at 2678.325 kb on - strand at 2678.325 kb on - strand at 2678.325 kb on - strand at 2678.337 kb on + strand at 2678.345 kb on - strand at 2678.353 kb on + strand at 2678.358 kb on + strand at 2678.361 kb on - strand at 2678.426 kb on + strand at 2678.426 kb on + strand at 2678.426 kb on + strand at 2678.426 kb on + strand at 2678.434 kb on - strand at 2678.434 kb on - strand at 2678.452 kb on + strand at 2678.460 kb on - strand at 2678.489 kb on - strand at 2678.499 kb on - strand at 2678.504 kb on + strand at 2678.518 kb on - strand, within CCNA_02530 at 2678.523 kb on - strand, within CCNA_02530 at 2678.525 kb on + strand, within CCNA_02530 at 2678.525 kb on + strand, within CCNA_02530 at 2678.526 kb on + strand, within CCNA_02530 at 2678.528 kb on - strand, within CCNA_02530 at 2678.572 kb on + strand, within CCNA_02530 at 2678.572 kb on + strand, within CCNA_02530 at 2678.580 kb on - strand, within CCNA_02530 at 2678.580 kb on - strand, within CCNA_02530 at 2678.580 kb on - strand, within CCNA_02530 at 2678.606 kb on - strand, within CCNA_02530 at 2678.611 kb on - strand, within CCNA_02530 at 2678.617 kb on + strand, within CCNA_02530 at 2678.622 kb on + strand, within CCNA_02530 at 2678.627 kb on + strand, within CCNA_02530 at 2678.627 kb on + strand, within CCNA_02530 at 2678.630 kb on - strand, within CCNA_02530 at 2678.635 kb on - strand, within CCNA_02530 at 2678.646 kb on - strand, within CCNA_02530 at 2678.666 kb on + strand, within CCNA_02530 at 2678.666 kb on + strand, within CCNA_02530 at 2678.666 kb on + strand, within CCNA_02530 at 2678.707 kb on - strand, within CCNA_02530 at 2678.717 kb on + strand, within CCNA_02530 at 2678.725 kb on - strand, within CCNA_02530 at 2678.725 kb on - strand, within CCNA_02530 at 2678.725 kb on - strand, within CCNA_02530 at 2678.755 kb on + strand, within CCNA_02530 at 2678.778 kb on + strand, within CCNA_02530 at 2678.800 kb on - strand, within CCNA_02530 at 2678.819 kb on + strand, within CCNA_02530 at 2678.827 kb on - strand, within CCNA_02530 at 2678.827 kb on - strand, within CCNA_02530 at 2678.897 kb on - strand, within CCNA_02530 at 2679.100 kb on + strand, within CCNA_02530 at 2679.135 kb on + strand, within CCNA_02530 at 2679.140 kb on + strand, within CCNA_02530 at 2679.140 kb on + strand, within CCNA_02530 at 2679.140 kb on + strand, within CCNA_02530 at 2679.140 kb on + strand, within CCNA_02530 at 2679.140 kb on + strand, within CCNA_02530 at 2679.140 kb on + strand, within CCNA_02530 at 2679.140 kb on + strand, within CCNA_02530 at 2679.140 kb on + strand, within CCNA_02530 at 2679.140 kb on + strand, within CCNA_02530 at 2679.148 kb on - strand, within CCNA_02530 at 2679.148 kb on - strand, within CCNA_02530 at 2679.148 kb on - strand, within CCNA_02530 at 2679.150 kb on + strand, within CCNA_02530 at 2679.153 kb on - strand, within CCNA_02530 at 2679.158 kb on - strand, within CCNA_02530 at 2679.163 kb on + strand, within CCNA_02530 at 2679.163 kb on + strand, within CCNA_02530 at 2679.163 kb on + strand, within CCNA_02530 at 2679.176 kb on + strand, within CCNA_02530 at 2679.176 kb on + strand, within CCNA_02530 at 2679.193 kb on - strand, within CCNA_02530 at 2679.201 kb on - strand, within CCNA_02530 at 2679.219 kb on - strand, within CCNA_02530 at 2679.247 kb on + strand, within CCNA_02530 at 2679.247 kb on + strand, within CCNA_02530 at 2679.251 kb on - strand, within CCNA_02530 at 2679.291 kb on + strand, within CCNA_02530 at 2679.296 kb on + strand, within CCNA_02530 at 2679.299 kb on - strand, within CCNA_02530 at 2679.301 kb on + strand, within CCNA_02530 at 2679.301 kb on + strand, within CCNA_02530 at 2679.325 kb on - strand, within CCNA_02530 at 2679.355 kb on - strand, within CCNA_02530 at 2679.394 kb on + strand, within CCNA_02530 at 2679.394 kb on - strand, within CCNA_02530 at 2679.407 kb on - strand, within CCNA_02530 at 2679.417 kb on - strand, within CCNA_02530 at 2679.417 kb on - strand, within CCNA_02530 at 2679.417 kb on - strand, within CCNA_02530 at 2679.417 kb on - strand, within CCNA_02530 at 2679.417 kb on - strand, within CCNA_02530 at 2679.423 kb on + strand, within CCNA_02530 at 2679.469 kb on - strand, within CCNA_02530 at 2679.492 kb on + strand at 2679.492 kb on + strand at 2679.492 kb on + strand at 2679.492 kb on + strand at 2679.500 kb on - strand at 2679.521 kb on + strand at 2679.566 kb on - strand at 2679.567 kb on - strand at 2679.577 kb on + strand at 2679.587 kb on + strand at 2679.613 kb on + strand at 2679.618 kb on + strand at 2679.621 kb on - strand at 2679.626 kb on - strand at 2679.626 kb on - strand at 2679.626 kb on - strand at 2679.648 kb on + strand at 2679.648 kb on + strand at 2679.651 kb on - strand at 2679.662 kb on + strand at 2679.685 kb on + strand, within CCNA_02531 at 2679.685 kb on + strand, within CCNA_02531 at 2679.693 kb on - strand, within CCNA_02531 at 2679.698 kb on - strand, within CCNA_02531 at 2679.773 kb on - strand, within CCNA_02531 at 2679.775 kb on + strand, within CCNA_02531 at 2679.822 kb on - strand, within CCNA_02531 at 2679.922 kb on - strand, within CCNA_02531 at 2679.933 kb on - strand, within CCNA_02531 at 2679.966 kb on - strand, within CCNA_02531 at 2679.990 kb on - strand, within CCNA_02531 at 2679.996 kb on + strand, within CCNA_02531 at 2679.996 kb on + strand, within CCNA_02531 at 2679.996 kb on + strand, within CCNA_02531 at 2680.000 kb on - strand, within CCNA_02531 at 2680.004 kb on - strand, within CCNA_02531 at 2680.053 kb on + strand, within CCNA_02531 at 2680.061 kb on - strand, within CCNA_02531 at 2680.070 kb on + strand, within CCNA_02531 at 2680.110 kb on - strand, within CCNA_02531 at 2680.110 kb on - strand, within CCNA_02531 at 2680.115 kb on + strand, within CCNA_02531 at 2680.256 kb on + strand, within CCNA_02531 at 2680.262 kb on + strand, within CCNA_02531 at 2680.301 kb on + strand at 2680.309 kb on - strand at 2680.309 kb on - strand at 2680.314 kb on + strand at 2680.341 kb on - strand at 2680.404 kb on + strand at 2680.411 kb on + strand at 2680.411 kb on + strand at 2680.411 kb on + strand at 2680.419 kb on + strand at 2680.450 kb on - strand at 2680.473 kb on + strand at 2680.490 kb on - strand at 2680.517 kb on - strand, within CCNA_02532 at 2680.536 kb on - strand, within CCNA_02532 at 2680.549 kb on + strand, within CCNA_02532 at 2680.550 kb on - strand, within CCNA_02532 at 2680.557 kb on - strand, within CCNA_02532 at 2680.562 kb on - strand, within CCNA_02532 at 2680.583 kb on + strand, within CCNA_02532 at 2680.583 kb on + strand, within CCNA_02532 at 2680.583 kb on + strand, within CCNA_02532
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,677,399 + CCNA_02529 0.16 +0.9 2,677,440 - CCNA_02529 0.19 -0.4 2,677,451 - CCNA_02529 0.20 -0.8 2,677,460 + CCNA_02529 0.21 +1.1 2,677,460 + CCNA_02529 0.21 +1.2 2,677,468 - CCNA_02529 0.22 -0.6 2,677,473 + CCNA_02529 0.22 -0.2 2,677,498 - CCNA_02529 0.25 +0.0 2,677,500 + CCNA_02529 0.25 +1.4 2,677,576 - CCNA_02529 0.32 -1.2 2,677,579 + CCNA_02529 0.32 +1.1 2,677,670 + CCNA_02529 0.40 -0.9 2,677,678 - CCNA_02529 0.41 -0.3 2,677,741 - CCNA_02529 0.47 -0.4 2,677,804 + CCNA_02529 0.53 -0.7 2,677,854 - CCNA_02529 0.57 -0.2 2,677,903 - CCNA_02529 0.62 -1.1 2,677,914 - CCNA_02529 0.63 -0.6 2,677,918 + CCNA_02529 0.63 -0.2 2,677,919 - CCNA_02529 0.63 -0.2 2,677,923 + CCNA_02529 0.63 -1.1 2,677,933 + CCNA_02529 0.64 -0.2 2,677,949 - CCNA_02529 0.66 +1.2 2,677,963 + CCNA_02529 0.67 -0.4 2,677,966 - +0.4 2,677,974 + CCNA_02529 0.68 -0.6 2,678,006 + CCNA_02529 0.71 +0.4 2,678,016 - CCNA_02529 0.72 -3.3 2,678,022 - CCNA_02529 0.72 -0.5 2,678,032 - CCNA_02529 0.73 +0.1 2,678,040 + CCNA_02529 0.74 +0.2 2,678,058 - CCNA_02529 0.76 -1.0 2,678,065 - CCNA_02529 0.76 -0.6 2,678,087 + CCNA_02529 0.78 +0.9 2,678,090 - CCNA_02529 0.79 -0.9 2,678,099 - CCNA_02529 0.80 +0.1 2,678,126 + CCNA_02529 0.82 +0.2 2,678,157 - CCNA_02529 0.85 +0.1 2,678,177 + CCNA_02529 0.87 +0.9 2,678,182 + CCNA_02529 0.87 -0.2 2,678,190 - CCNA_02529 0.88 +1.2 2,678,190 - CCNA_02529 0.88 +0.4 2,678,193 + CCNA_02529 0.88 +0.7 2,678,193 + CCNA_02529 0.88 +0.5 2,678,201 - CCNA_02529 0.89 +0.6 2,678,210 + CCNA_02529 0.90 +0.7 2,678,210 + CCNA_02529 0.90 +0.5 2,678,210 + CCNA_02529 0.90 +0.3 2,678,218 - +0.1 2,678,260 + +0.4 2,678,268 - -0.2 2,678,272 - +0.2 2,678,278 - -1.2 2,678,315 + -0.2 2,678,317 + +0.5 2,678,317 + -0.1 2,678,317 + -0.0 2,678,325 - -0.4 2,678,325 - +0.1 2,678,325 - +0.3 2,678,325 - +0.6 2,678,337 + -0.6 2,678,345 - -0.6 2,678,353 + +0.8 2,678,358 + -1.4 2,678,361 - +0.4 2,678,426 + +1.5 2,678,426 + -0.8 2,678,426 + +0.2 2,678,426 + +0.3 2,678,434 - -3.1 2,678,434 - +0.2 2,678,452 + +0.8 2,678,460 - +0.5 2,678,489 - -0.5 2,678,499 - +1.5 2,678,504 + -0.3 2,678,518 - CCNA_02530 0.11 +1.2 2,678,523 - CCNA_02530 0.11 +1.3 2,678,525 + CCNA_02530 0.11 +0.9 2,678,525 + CCNA_02530 0.11 +0.3 2,678,526 + CCNA_02530 0.12 +1.6 2,678,528 - CCNA_02530 0.12 -0.2 2,678,572 + CCNA_02530 0.15 +1.2 2,678,572 + CCNA_02530 0.15 +1.9 2,678,580 - CCNA_02530 0.16 -0.2 2,678,580 - CCNA_02530 0.16 -0.2 2,678,580 - CCNA_02530 0.16 +2.4 2,678,606 - CCNA_02530 0.18 +0.0 2,678,611 - CCNA_02530 0.19 -0.3 2,678,617 + CCNA_02530 0.19 +0.5 2,678,622 + CCNA_02530 0.19 +1.5 2,678,627 + CCNA_02530 0.20 +0.5 2,678,627 + CCNA_02530 0.20 +1.1 2,678,630 - CCNA_02530 0.20 +0.9 2,678,635 - CCNA_02530 0.21 -0.8 2,678,646 - CCNA_02530 0.21 -1.5 2,678,666 + CCNA_02530 0.23 +0.4 2,678,666 + CCNA_02530 0.23 +0.9 2,678,666 + CCNA_02530 0.23 +0.5 2,678,707 - CCNA_02530 0.27 +0.1 2,678,717 + CCNA_02530 0.27 +1.2 2,678,725 - CCNA_02530 0.28 -2.2 2,678,725 - CCNA_02530 0.28 -0.6 2,678,725 - CCNA_02530 0.28 -1.3 2,678,755 + CCNA_02530 0.31 +0.2 2,678,778 + CCNA_02530 0.32 +0.2 2,678,800 - CCNA_02530 0.34 +0.1 2,678,819 + CCNA_02530 0.36 +1.8 2,678,827 - CCNA_02530 0.36 +0.4 2,678,827 - CCNA_02530 0.36 -1.6 2,678,897 - CCNA_02530 0.42 -0.0 2,679,100 + CCNA_02530 0.59 +0.6 2,679,135 + CCNA_02530 0.62 +0.3 2,679,140 + CCNA_02530 0.62 +1.4 2,679,140 + CCNA_02530 0.62 +0.1 2,679,140 + CCNA_02530 0.62 +1.6 2,679,140 + CCNA_02530 0.62 +0.9 2,679,140 + CCNA_02530 0.62 +0.7 2,679,140 + CCNA_02530 0.62 +1.5 2,679,140 + CCNA_02530 0.62 +0.9 2,679,140 + CCNA_02530 0.62 +2.1 2,679,140 + CCNA_02530 0.62 +0.8 2,679,148 - CCNA_02530 0.63 -0.2 2,679,148 - CCNA_02530 0.63 -2.5 2,679,148 - CCNA_02530 0.63 +0.6 2,679,150 + CCNA_02530 0.63 +0.7 2,679,153 - CCNA_02530 0.64 +0.4 2,679,158 - CCNA_02530 0.64 -0.4 2,679,163 + CCNA_02530 0.64 +0.5 2,679,163 + CCNA_02530 0.64 +1.2 2,679,163 + CCNA_02530 0.64 +1.5 2,679,176 + CCNA_02530 0.65 +1.5 2,679,176 + CCNA_02530 0.65 +0.2 2,679,193 - CCNA_02530 0.67 -0.2 2,679,201 - CCNA_02530 0.67 +0.6 2,679,219 - CCNA_02530 0.69 +0.1 2,679,247 + CCNA_02530 0.71 -0.2 2,679,247 + CCNA_02530 0.71 +1.4 2,679,251 - CCNA_02530 0.72 -0.3 2,679,291 + CCNA_02530 0.75 +1.3 2,679,296 + CCNA_02530 0.75 +1.5 2,679,299 - CCNA_02530 0.76 -0.0 2,679,301 + CCNA_02530 0.76 +1.0 2,679,301 + CCNA_02530 0.76 +1.6 2,679,325 - CCNA_02530 0.78 +0.1 2,679,355 - CCNA_02530 0.80 -0.6 2,679,394 + CCNA_02530 0.83 +1.2 2,679,394 - CCNA_02530 0.83 -0.7 2,679,407 - CCNA_02530 0.85 +0.6 2,679,417 - CCNA_02530 0.85 -0.4 2,679,417 - CCNA_02530 0.85 +0.1 2,679,417 - CCNA_02530 0.85 -1.9 2,679,417 - CCNA_02530 0.85 -2.6 2,679,417 - CCNA_02530 0.85 +0.7 2,679,423 + CCNA_02530 0.86 +1.0 2,679,469 - CCNA_02530 0.90 +0.1 2,679,492 + +0.0 2,679,492 + -1.3 2,679,492 + +0.2 2,679,492 + +1.4 2,679,500 - +1.4 2,679,521 + +1.0 2,679,566 - +0.8 2,679,567 - -1.7 2,679,577 + -0.2 2,679,587 + +0.6 2,679,613 + -0.8 2,679,618 + +0.4 2,679,621 - -0.9 2,679,626 - +0.1 2,679,626 - +0.1 2,679,626 - +0.1 2,679,648 + +0.9 2,679,648 + +0.1 2,679,651 - -0.0 2,679,662 + +1.4 2,679,685 + CCNA_02531 0.12 +1.0 2,679,685 + CCNA_02531 0.12 -0.1 2,679,693 - CCNA_02531 0.13 +0.8 2,679,698 - CCNA_02531 0.14 +1.3 2,679,773 - CCNA_02531 0.23 +0.1 2,679,775 + CCNA_02531 0.24 +0.4 2,679,822 - CCNA_02531 0.30 -0.5 2,679,922 - CCNA_02531 0.43 -0.7 2,679,933 - CCNA_02531 0.44 -2.8 2,679,966 - CCNA_02531 0.48 -0.0 2,679,990 - CCNA_02531 0.51 +0.6 2,679,996 + CCNA_02531 0.52 -0.2 2,679,996 + CCNA_02531 0.52 +0.7 2,679,996 + CCNA_02531 0.52 +0.1 2,680,000 - CCNA_02531 0.52 +0.9 2,680,004 - CCNA_02531 0.53 -0.7 2,680,053 + CCNA_02531 0.59 +0.6 2,680,061 - CCNA_02531 0.60 +0.3 2,680,070 + CCNA_02531 0.61 +0.8 2,680,110 - CCNA_02531 0.67 -0.9 2,680,110 - CCNA_02531 0.67 +1.9 2,680,115 + CCNA_02531 0.67 -0.7 2,680,256 + CCNA_02531 0.85 +0.4 2,680,262 + CCNA_02531 0.86 -0.6 2,680,301 + +0.5 2,680,309 - +0.9 2,680,309 - -0.1 2,680,314 + +0.9 2,680,341 - +1.2 2,680,404 + -1.8 2,680,411 + +0.1 2,680,411 + -0.4 2,680,411 + -1.7 2,680,419 + +1.2 2,680,450 - -1.0 2,680,473 + +2.2 2,680,490 - -1.0 2,680,517 - CCNA_02532 0.20 -1.3 2,680,536 - CCNA_02532 0.29 +0.2 2,680,549 + CCNA_02532 0.35 -3.5 2,680,550 - CCNA_02532 0.36 -0.3 2,680,557 - CCNA_02532 0.39 +0.1 2,680,562 - CCNA_02532 0.42 -0.4 2,680,583 + CCNA_02532 0.52 -0.3 2,680,583 + CCNA_02532 0.52 -0.3 2,680,583 + CCNA_02532 0.52 -0.2
Or see this region's nucleotide sequence