Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02307 and CCNA_02308 are separated by 126 nucleotides CCNA_02308 and CCNA_02309 are separated by 187 nucleotides CCNA_02309 and CCNA_02310 are separated by 153 nucleotides
CCNA_02307: CCNA_02307 - cyclohexadienyl dehydrogenase, at 2,452,412 to 2,453,350
_02307
CCNA_02308: CCNA_02308 - hypothetical protein, at 2,453,477 to 2,454,331
_02308
CCNA_02309: CCNA_02309 - EF hand domain protein, at 2,454,519 to 2,454,854
_02309
CCNA_02310: CCNA_02310 - glycosyl hydrolase, family 9, at 2,455,008 to 2,456,885
_02310
Position (kb)
2453
2454
2455 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2452.574 kb on + strand, within CCNA_02307 at 2452.575 kb on - strand, within CCNA_02307 at 2452.620 kb on + strand, within CCNA_02307 at 2452.651 kb on - strand, within CCNA_02307 at 2452.658 kb on + strand, within CCNA_02307 at 2452.708 kb on - strand, within CCNA_02307 at 2452.726 kb on + strand, within CCNA_02307 at 2452.795 kb on + strand, within CCNA_02307 at 2452.805 kb on + strand, within CCNA_02307 at 2452.859 kb on + strand, within CCNA_02307 at 2452.907 kb on + strand, within CCNA_02307 at 2452.946 kb on - strand, within CCNA_02307 at 2452.967 kb on + strand, within CCNA_02307 at 2453.009 kb on - strand, within CCNA_02307 at 2453.032 kb on - strand, within CCNA_02307 at 2453.069 kb on + strand, within CCNA_02307 at 2453.092 kb on - strand, within CCNA_02307 at 2453.168 kb on + strand, within CCNA_02307 at 2453.176 kb on - strand, within CCNA_02307 at 2453.176 kb on - strand, within CCNA_02307 at 2453.176 kb on - strand, within CCNA_02307 at 2453.176 kb on - strand, within CCNA_02307 at 2453.176 kb on - strand, within CCNA_02307 at 2453.214 kb on - strand, within CCNA_02307 at 2453.255 kb on + strand, within CCNA_02307 at 2453.255 kb on + strand, within CCNA_02307 at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.308 kb on - strand at 2453.308 kb on - strand at 2453.344 kb on + strand at 2453.344 kb on + strand at 2453.344 kb on + strand at 2453.345 kb on + strand at 2453.345 kb on + strand at 2453.345 kb on + strand at 2453.352 kb on - strand at 2453.433 kb on - strand at 2453.467 kb on - strand at 2453.506 kb on + strand at 2453.519 kb on - strand at 2453.534 kb on - strand at 2453.545 kb on - strand at 2453.596 kb on + strand, within CCNA_02308 at 2453.596 kb on + strand, within CCNA_02308 at 2453.648 kb on - strand, within CCNA_02308 at 2453.651 kb on + strand, within CCNA_02308 at 2453.659 kb on - strand, within CCNA_02308 at 2453.703 kb on - strand, within CCNA_02308 at 2453.714 kb on - strand, within CCNA_02308 at 2453.716 kb on + strand, within CCNA_02308 at 2453.724 kb on - strand, within CCNA_02308 at 2453.743 kb on + strand, within CCNA_02308 at 2453.771 kb on + strand, within CCNA_02308 at 2453.809 kb on + strand, within CCNA_02308 at 2453.817 kb on - strand, within CCNA_02308 at 2453.834 kb on - strand, within CCNA_02308 at 2453.854 kb on + strand, within CCNA_02308 at 2453.861 kb on + strand, within CCNA_02308 at 2453.869 kb on - strand, within CCNA_02308 at 2453.879 kb on - strand, within CCNA_02308 at 2453.892 kb on - strand, within CCNA_02308 at 2453.964 kb on - strand, within CCNA_02308 at 2453.964 kb on - strand, within CCNA_02308 at 2453.968 kb on + strand, within CCNA_02308 at 2453.968 kb on + strand, within CCNA_02308 at 2454.003 kb on - strand, within CCNA_02308 at 2454.016 kb on + strand, within CCNA_02308 at 2454.118 kb on + strand, within CCNA_02308 at 2454.119 kb on - strand, within CCNA_02308 at 2454.148 kb on - strand, within CCNA_02308 at 2454.161 kb on - strand, within CCNA_02308 at 2454.166 kb on + strand, within CCNA_02308 at 2454.173 kb on + strand, within CCNA_02308 at 2454.181 kb on - strand, within CCNA_02308 at 2454.181 kb on - strand, within CCNA_02308 at 2454.222 kb on + strand, within CCNA_02308 at 2454.230 kb on - strand, within CCNA_02308 at 2454.230 kb on - strand, within CCNA_02308 at 2454.230 kb on - strand, within CCNA_02308 at 2454.230 kb on - strand, within CCNA_02308 at 2454.239 kb on + strand, within CCNA_02308 at 2454.254 kb on + strand at 2454.299 kb on + strand at 2454.339 kb on + strand at 2454.347 kb on - strand at 2454.352 kb on - strand at 2454.392 kb on + strand at 2454.499 kb on - strand at 2454.696 kb on + strand, within CCNA_02309 at 2454.766 kb on - strand, within CCNA_02309 at 2454.800 kb on + strand, within CCNA_02309 at 2454.802 kb on + strand, within CCNA_02309 at 2454.809 kb on - strand, within CCNA_02309 at 2454.813 kb on + strand, within CCNA_02309 at 2454.848 kb on + strand at 2454.848 kb on + strand at 2454.848 kb on + strand at 2454.848 kb on + strand at 2454.850 kb on + strand at 2454.856 kb on - strand at 2454.856 kb on - strand at 2454.856 kb on - strand at 2454.870 kb on + strand at 2454.870 kb on + strand at 2454.878 kb on - strand at 2454.878 kb on - strand at 2454.878 kb on - strand at 2454.982 kb on + strand at 2454.990 kb on - strand at 2455.039 kb on + strand at 2455.050 kb on + strand at 2455.077 kb on + strand at 2455.085 kb on - strand at 2455.124 kb on + strand at 2455.126 kb on - strand at 2455.150 kb on - strand at 2455.176 kb on + strand at 2455.181 kb on + strand at 2455.189 kb on - strand at 2455.189 kb on - strand at 2455.189 kb on - strand at 2455.191 kb on + strand at 2455.217 kb on + strand, within CCNA_02310 at 2455.217 kb on + strand, within CCNA_02310 at 2455.223 kb on + strand, within CCNA_02310 at 2455.224 kb on + strand, within CCNA_02310 at 2455.231 kb on - strand, within CCNA_02310 at 2455.232 kb on - strand, within CCNA_02310 at 2455.295 kb on + strand, within CCNA_02310
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,452,574 + CCNA_02307 0.17 -2.5 2,452,575 - CCNA_02307 0.17 -2.7 2,452,620 + CCNA_02307 0.22 -2.7 2,452,651 - CCNA_02307 0.25 -2.8 2,452,658 + CCNA_02307 0.26 -0.8 2,452,708 - CCNA_02307 0.32 -1.4 2,452,726 + CCNA_02307 0.33 -0.1 2,452,795 + CCNA_02307 0.41 -2.1 2,452,805 + CCNA_02307 0.42 -3.1 2,452,859 + CCNA_02307 0.48 -2.9 2,452,907 + CCNA_02307 0.53 -2.6 2,452,946 - CCNA_02307 0.57 -2.9 2,452,967 + CCNA_02307 0.59 -2.1 2,453,009 - CCNA_02307 0.64 -0.2 2,453,032 - CCNA_02307 0.66 -3.8 2,453,069 + CCNA_02307 0.70 -3.1 2,453,092 - CCNA_02307 0.72 -0.4 2,453,168 + CCNA_02307 0.81 -1.8 2,453,176 - CCNA_02307 0.81 -2.3 2,453,176 - CCNA_02307 0.81 +0.2 2,453,176 - CCNA_02307 0.81 -2.8 2,453,176 - CCNA_02307 0.81 -2.0 2,453,176 - CCNA_02307 0.81 -1.8 2,453,214 - CCNA_02307 0.85 -3.4 2,453,255 + CCNA_02307 0.90 -2.5 2,453,255 + CCNA_02307 0.90 -1.6 2,453,300 + +1.2 2,453,300 + +0.7 2,453,300 + +0.7 2,453,300 + +0.8 2,453,300 + +0.7 2,453,300 + +1.5 2,453,300 + +1.0 2,453,308 - -1.5 2,453,308 - +1.1 2,453,344 + +0.6 2,453,344 + +0.5 2,453,344 + +1.1 2,453,345 + +1.5 2,453,345 + +1.5 2,453,345 + +1.7 2,453,352 - -0.9 2,453,433 - +0.6 2,453,467 - +0.4 2,453,506 + +0.9 2,453,519 - -0.0 2,453,534 - -1.2 2,453,545 - -1.5 2,453,596 + CCNA_02308 0.14 -1.3 2,453,596 + CCNA_02308 0.14 -0.4 2,453,648 - CCNA_02308 0.20 -0.7 2,453,651 + CCNA_02308 0.20 -0.3 2,453,659 - CCNA_02308 0.21 -0.4 2,453,703 - CCNA_02308 0.26 -0.3 2,453,714 - CCNA_02308 0.28 -2.6 2,453,716 + CCNA_02308 0.28 -2.7 2,453,724 - CCNA_02308 0.29 -0.6 2,453,743 + CCNA_02308 0.31 +1.6 2,453,771 + CCNA_02308 0.34 -0.2 2,453,809 + CCNA_02308 0.39 -0.1 2,453,817 - CCNA_02308 0.40 +0.7 2,453,834 - CCNA_02308 0.42 -1.6 2,453,854 + CCNA_02308 0.44 -0.1 2,453,861 + CCNA_02308 0.45 +1.6 2,453,869 - CCNA_02308 0.46 +0.5 2,453,879 - CCNA_02308 0.47 +0.5 2,453,892 - CCNA_02308 0.49 +0.2 2,453,964 - CCNA_02308 0.57 -0.4 2,453,964 - CCNA_02308 0.57 -0.7 2,453,968 + CCNA_02308 0.57 -0.4 2,453,968 + CCNA_02308 0.57 -1.3 2,454,003 - CCNA_02308 0.62 -0.6 2,454,016 + CCNA_02308 0.63 -0.4 2,454,118 + CCNA_02308 0.75 +0.0 2,454,119 - CCNA_02308 0.75 -1.4 2,454,148 - CCNA_02308 0.78 +2.5 2,454,161 - CCNA_02308 0.80 -1.0 2,454,166 + CCNA_02308 0.81 -1.9 2,454,173 + CCNA_02308 0.81 -0.9 2,454,181 - CCNA_02308 0.82 -1.4 2,454,181 - CCNA_02308 0.82 -1.4 2,454,222 + CCNA_02308 0.87 -2.2 2,454,230 - CCNA_02308 0.88 +0.3 2,454,230 - CCNA_02308 0.88 +0.5 2,454,230 - CCNA_02308 0.88 +1.0 2,454,230 - CCNA_02308 0.88 +0.6 2,454,239 + CCNA_02308 0.89 +1.0 2,454,254 + -1.5 2,454,299 + +0.6 2,454,339 + -0.1 2,454,347 - +0.1 2,454,352 - -0.1 2,454,392 + +1.6 2,454,499 - -0.0 2,454,696 + CCNA_02309 0.53 +0.8 2,454,766 - CCNA_02309 0.74 +1.4 2,454,800 + CCNA_02309 0.84 +0.7 2,454,802 + CCNA_02309 0.84 +1.5 2,454,809 - CCNA_02309 0.86 +1.2 2,454,813 + CCNA_02309 0.88 +0.9 2,454,848 + +1.5 2,454,848 + +1.1 2,454,848 + +1.2 2,454,848 + +0.2 2,454,850 + +0.6 2,454,856 - +0.4 2,454,856 - -0.4 2,454,856 - -0.5 2,454,870 + +0.6 2,454,870 + +0.3 2,454,878 - +0.2 2,454,878 - -0.9 2,454,878 - -0.4 2,454,982 + -1.0 2,454,990 - +0.9 2,455,039 + +1.2 2,455,050 + -0.9 2,455,077 + -1.8 2,455,085 - +1.1 2,455,124 + +0.0 2,455,126 - +0.0 2,455,150 - +0.7 2,455,176 + -0.4 2,455,181 + -0.4 2,455,189 - +0.2 2,455,189 - +0.2 2,455,189 - +0.5 2,455,191 + +1.7 2,455,217 + CCNA_02310 0.11 -0.3 2,455,217 + CCNA_02310 0.11 +0.2 2,455,223 + CCNA_02310 0.11 -0.3 2,455,224 + CCNA_02310 0.12 -1.8 2,455,231 - CCNA_02310 0.12 -0.5 2,455,232 - CCNA_02310 0.12 -1.1 2,455,295 + CCNA_02310 0.15 -1.8
Or see this region's nucleotide sequence