Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02308

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02307 and CCNA_02308 are separated by 126 nucleotidesCCNA_02308 and CCNA_02309 are separated by 187 nucleotidesCCNA_02309 and CCNA_02310 are separated by 153 nucleotides CCNA_02307: CCNA_02307 - cyclohexadienyl dehydrogenase, at 2,452,412 to 2,453,350 _02307 CCNA_02308: CCNA_02308 - hypothetical protein, at 2,453,477 to 2,454,331 _02308 CCNA_02309: CCNA_02309 - EF hand domain protein, at 2,454,519 to 2,454,854 _02309 CCNA_02310: CCNA_02310 - glycosyl hydrolase, family 9, at 2,455,008 to 2,456,885 _02310 Position (kb) 2453 2454 2455Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2452.574 kb on + strand, within CCNA_02307at 2452.575 kb on - strand, within CCNA_02307at 2452.620 kb on + strand, within CCNA_02307at 2452.651 kb on - strand, within CCNA_02307at 2452.658 kb on + strand, within CCNA_02307at 2452.708 kb on - strand, within CCNA_02307at 2452.726 kb on + strand, within CCNA_02307at 2452.795 kb on + strand, within CCNA_02307at 2452.805 kb on + strand, within CCNA_02307at 2452.859 kb on + strand, within CCNA_02307at 2452.907 kb on + strand, within CCNA_02307at 2452.946 kb on - strand, within CCNA_02307at 2452.967 kb on + strand, within CCNA_02307at 2453.009 kb on - strand, within CCNA_02307at 2453.032 kb on - strand, within CCNA_02307at 2453.069 kb on + strand, within CCNA_02307at 2453.092 kb on - strand, within CCNA_02307at 2453.168 kb on + strand, within CCNA_02307at 2453.176 kb on - strand, within CCNA_02307at 2453.176 kb on - strand, within CCNA_02307at 2453.176 kb on - strand, within CCNA_02307at 2453.176 kb on - strand, within CCNA_02307at 2453.176 kb on - strand, within CCNA_02307at 2453.214 kb on - strand, within CCNA_02307at 2453.255 kb on + strand, within CCNA_02307at 2453.255 kb on + strand, within CCNA_02307at 2453.300 kb on + strandat 2453.300 kb on + strandat 2453.300 kb on + strandat 2453.300 kb on + strandat 2453.300 kb on + strandat 2453.300 kb on + strandat 2453.300 kb on + strandat 2453.308 kb on - strandat 2453.308 kb on - strandat 2453.344 kb on + strandat 2453.344 kb on + strandat 2453.344 kb on + strandat 2453.345 kb on + strandat 2453.345 kb on + strandat 2453.345 kb on + strandat 2453.352 kb on - strandat 2453.433 kb on - strandat 2453.467 kb on - strandat 2453.506 kb on + strandat 2453.519 kb on - strandat 2453.534 kb on - strandat 2453.545 kb on - strandat 2453.596 kb on + strand, within CCNA_02308at 2453.596 kb on + strand, within CCNA_02308at 2453.648 kb on - strand, within CCNA_02308at 2453.651 kb on + strand, within CCNA_02308at 2453.659 kb on - strand, within CCNA_02308at 2453.703 kb on - strand, within CCNA_02308at 2453.714 kb on - strand, within CCNA_02308at 2453.716 kb on + strand, within CCNA_02308at 2453.724 kb on - strand, within CCNA_02308at 2453.743 kb on + strand, within CCNA_02308at 2453.771 kb on + strand, within CCNA_02308at 2453.809 kb on + strand, within CCNA_02308at 2453.817 kb on - strand, within CCNA_02308at 2453.834 kb on - strand, within CCNA_02308at 2453.854 kb on + strand, within CCNA_02308at 2453.861 kb on + strand, within CCNA_02308at 2453.869 kb on - strand, within CCNA_02308at 2453.879 kb on - strand, within CCNA_02308at 2453.892 kb on - strand, within CCNA_02308at 2453.964 kb on - strand, within CCNA_02308at 2453.964 kb on - strand, within CCNA_02308at 2453.968 kb on + strand, within CCNA_02308at 2453.968 kb on + strand, within CCNA_02308at 2454.003 kb on - strand, within CCNA_02308at 2454.016 kb on + strand, within CCNA_02308at 2454.118 kb on + strand, within CCNA_02308at 2454.119 kb on - strand, within CCNA_02308at 2454.148 kb on - strand, within CCNA_02308at 2454.161 kb on - strand, within CCNA_02308at 2454.166 kb on + strand, within CCNA_02308at 2454.173 kb on + strand, within CCNA_02308at 2454.181 kb on - strand, within CCNA_02308at 2454.181 kb on - strand, within CCNA_02308at 2454.222 kb on + strand, within CCNA_02308at 2454.230 kb on - strand, within CCNA_02308at 2454.230 kb on - strand, within CCNA_02308at 2454.230 kb on - strand, within CCNA_02308at 2454.230 kb on - strand, within CCNA_02308at 2454.239 kb on + strand, within CCNA_02308at 2454.254 kb on + strandat 2454.299 kb on + strandat 2454.339 kb on + strandat 2454.347 kb on - strandat 2454.352 kb on - strandat 2454.392 kb on + strandat 2454.499 kb on - strandat 2454.696 kb on + strand, within CCNA_02309at 2454.766 kb on - strand, within CCNA_02309at 2454.800 kb on + strand, within CCNA_02309at 2454.802 kb on + strand, within CCNA_02309at 2454.809 kb on - strand, within CCNA_02309at 2454.813 kb on + strand, within CCNA_02309at 2454.848 kb on + strandat 2454.848 kb on + strandat 2454.848 kb on + strandat 2454.848 kb on + strandat 2454.850 kb on + strandat 2454.856 kb on - strandat 2454.856 kb on - strandat 2454.856 kb on - strandat 2454.870 kb on + strandat 2454.870 kb on + strandat 2454.878 kb on - strandat 2454.878 kb on - strandat 2454.878 kb on - strandat 2454.982 kb on + strandat 2454.990 kb on - strandat 2455.039 kb on + strandat 2455.050 kb on + strandat 2455.077 kb on + strandat 2455.085 kb on - strandat 2455.124 kb on + strandat 2455.126 kb on - strandat 2455.150 kb on - strandat 2455.176 kb on + strandat 2455.181 kb on + strandat 2455.189 kb on - strandat 2455.189 kb on - strandat 2455.189 kb on - strandat 2455.191 kb on + strandat 2455.217 kb on + strand, within CCNA_02310at 2455.217 kb on + strand, within CCNA_02310at 2455.223 kb on + strand, within CCNA_02310at 2455.224 kb on + strand, within CCNA_02310at 2455.231 kb on - strand, within CCNA_02310at 2455.232 kb on - strand, within CCNA_02310at 2455.295 kb on + strand, within CCNA_02310

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,452,574 + CCNA_02307 0.17 -2.5
2,452,575 - CCNA_02307 0.17 -2.7
2,452,620 + CCNA_02307 0.22 -2.7
2,452,651 - CCNA_02307 0.25 -2.8
2,452,658 + CCNA_02307 0.26 -0.8
2,452,708 - CCNA_02307 0.32 -1.4
2,452,726 + CCNA_02307 0.33 -0.1
2,452,795 + CCNA_02307 0.41 -2.1
2,452,805 + CCNA_02307 0.42 -3.1
2,452,859 + CCNA_02307 0.48 -2.9
2,452,907 + CCNA_02307 0.53 -2.6
2,452,946 - CCNA_02307 0.57 -2.9
2,452,967 + CCNA_02307 0.59 -2.1
2,453,009 - CCNA_02307 0.64 -0.2
2,453,032 - CCNA_02307 0.66 -3.8
2,453,069 + CCNA_02307 0.70 -3.1
2,453,092 - CCNA_02307 0.72 -0.4
2,453,168 + CCNA_02307 0.81 -1.8
2,453,176 - CCNA_02307 0.81 -2.3
2,453,176 - CCNA_02307 0.81 +0.2
2,453,176 - CCNA_02307 0.81 -2.8
2,453,176 - CCNA_02307 0.81 -2.0
2,453,176 - CCNA_02307 0.81 -1.8
2,453,214 - CCNA_02307 0.85 -3.4
2,453,255 + CCNA_02307 0.90 -2.5
2,453,255 + CCNA_02307 0.90 -1.6
2,453,300 + +1.2
2,453,300 + +0.7
2,453,300 + +0.7
2,453,300 + +0.8
2,453,300 + +0.7
2,453,300 + +1.5
2,453,300 + +1.0
2,453,308 - -1.5
2,453,308 - +1.1
2,453,344 + +0.6
2,453,344 + +0.5
2,453,344 + +1.1
2,453,345 + +1.5
2,453,345 + +1.5
2,453,345 + +1.7
2,453,352 - -0.9
2,453,433 - +0.6
2,453,467 - +0.4
2,453,506 + +0.9
2,453,519 - -0.0
2,453,534 - -1.2
2,453,545 - -1.5
2,453,596 + CCNA_02308 0.14 -1.3
2,453,596 + CCNA_02308 0.14 -0.4
2,453,648 - CCNA_02308 0.20 -0.7
2,453,651 + CCNA_02308 0.20 -0.3
2,453,659 - CCNA_02308 0.21 -0.4
2,453,703 - CCNA_02308 0.26 -0.3
2,453,714 - CCNA_02308 0.28 -2.6
2,453,716 + CCNA_02308 0.28 -2.7
2,453,724 - CCNA_02308 0.29 -0.6
2,453,743 + CCNA_02308 0.31 +1.6
2,453,771 + CCNA_02308 0.34 -0.2
2,453,809 + CCNA_02308 0.39 -0.1
2,453,817 - CCNA_02308 0.40 +0.7
2,453,834 - CCNA_02308 0.42 -1.6
2,453,854 + CCNA_02308 0.44 -0.1
2,453,861 + CCNA_02308 0.45 +1.6
2,453,869 - CCNA_02308 0.46 +0.5
2,453,879 - CCNA_02308 0.47 +0.5
2,453,892 - CCNA_02308 0.49 +0.2
2,453,964 - CCNA_02308 0.57 -0.4
2,453,964 - CCNA_02308 0.57 -0.7
2,453,968 + CCNA_02308 0.57 -0.4
2,453,968 + CCNA_02308 0.57 -1.3
2,454,003 - CCNA_02308 0.62 -0.6
2,454,016 + CCNA_02308 0.63 -0.4
2,454,118 + CCNA_02308 0.75 +0.0
2,454,119 - CCNA_02308 0.75 -1.4
2,454,148 - CCNA_02308 0.78 +2.5
2,454,161 - CCNA_02308 0.80 -1.0
2,454,166 + CCNA_02308 0.81 -1.9
2,454,173 + CCNA_02308 0.81 -0.9
2,454,181 - CCNA_02308 0.82 -1.4
2,454,181 - CCNA_02308 0.82 -1.4
2,454,222 + CCNA_02308 0.87 -2.2
2,454,230 - CCNA_02308 0.88 +0.3
2,454,230 - CCNA_02308 0.88 +0.5
2,454,230 - CCNA_02308 0.88 +1.0
2,454,230 - CCNA_02308 0.88 +0.6
2,454,239 + CCNA_02308 0.89 +1.0
2,454,254 + -1.5
2,454,299 + +0.6
2,454,339 + -0.1
2,454,347 - +0.1
2,454,352 - -0.1
2,454,392 + +1.6
2,454,499 - -0.0
2,454,696 + CCNA_02309 0.53 +0.8
2,454,766 - CCNA_02309 0.74 +1.4
2,454,800 + CCNA_02309 0.84 +0.7
2,454,802 + CCNA_02309 0.84 +1.5
2,454,809 - CCNA_02309 0.86 +1.2
2,454,813 + CCNA_02309 0.88 +0.9
2,454,848 + +1.5
2,454,848 + +1.1
2,454,848 + +1.2
2,454,848 + +0.2
2,454,850 + +0.6
2,454,856 - +0.4
2,454,856 - -0.4
2,454,856 - -0.5
2,454,870 + +0.6
2,454,870 + +0.3
2,454,878 - +0.2
2,454,878 - -0.9
2,454,878 - -0.4
2,454,982 + -1.0
2,454,990 - +0.9
2,455,039 + +1.2
2,455,050 + -0.9
2,455,077 + -1.8
2,455,085 - +1.1
2,455,124 + +0.0
2,455,126 - +0.0
2,455,150 - +0.7
2,455,176 + -0.4
2,455,181 + -0.4
2,455,189 - +0.2
2,455,189 - +0.2
2,455,189 - +0.5
2,455,191 + +1.7
2,455,217 + CCNA_02310 0.11 -0.3
2,455,217 + CCNA_02310 0.11 +0.2
2,455,223 + CCNA_02310 0.11 -0.3
2,455,224 + CCNA_02310 0.12 -1.8
2,455,231 - CCNA_02310 0.12 -0.5
2,455,232 - CCNA_02310 0.12 -1.1
2,455,295 + CCNA_02310 0.15 -1.8

Or see this region's nucleotide sequence