Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01993 and CCNA_01994 overlap by 59 nucleotides CCNA_01994 and CCNA_01995 overlap by 13 nucleotides CCNA_01995 and CCNA_01996 overlap by 41 nucleotides
CCNA_01993: CCNA_01993 - membrane endopeptidase MmpA, at 2,139,697 to 2,140,974
_01993
CCNA_01994: CCNA_01994 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 2,140,916 to 2,142,115
_01994
CCNA_01995: CCNA_01995 - phosphatidate cytidylyltransferase, at 2,142,103 to 2,142,948
_01995
CCNA_01996: CCNA_01996 - undecaprenyl pyrophosphate synthetase, at 2,142,908 to 2,143,687
_01996
Position (kb)
2140
2141
2142
2143 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2139.946 kb on - strand, within CCNA_01993 at 2139.946 kb on - strand, within CCNA_01993 at 2140.014 kb on - strand, within CCNA_01993 at 2140.017 kb on + strand, within CCNA_01993 at 2140.032 kb on - strand, within CCNA_01993 at 2140.032 kb on - strand, within CCNA_01993 at 2140.032 kb on - strand, within CCNA_01993 at 2140.033 kb on - strand, within CCNA_01993 at 2140.061 kb on + strand, within CCNA_01993 at 2140.061 kb on + strand, within CCNA_01993 at 2140.069 kb on - strand, within CCNA_01993 at 2140.069 kb on - strand, within CCNA_01993 at 2140.069 kb on - strand, within CCNA_01993 at 2140.069 kb on - strand, within CCNA_01993 at 2140.114 kb on - strand, within CCNA_01993 at 2140.114 kb on - strand, within CCNA_01993 at 2140.192 kb on + strand, within CCNA_01993 at 2140.192 kb on + strand, within CCNA_01993 at 2140.192 kb on + strand, within CCNA_01993 at 2140.200 kb on - strand, within CCNA_01993 at 2140.220 kb on - strand, within CCNA_01993 at 2140.275 kb on - strand, within CCNA_01993 at 2140.275 kb on - strand, within CCNA_01993 at 2140.337 kb on - strand, within CCNA_01993 at 2140.344 kb on - strand, within CCNA_01993 at 2140.363 kb on - strand, within CCNA_01993 at 2140.406 kb on - strand, within CCNA_01993 at 2140.503 kb on - strand, within CCNA_01993 at 2140.560 kb on - strand, within CCNA_01993 at 2140.801 kb on - strand, within CCNA_01993 at 2140.801 kb on - strand, within CCNA_01993 at 2140.808 kb on + strand, within CCNA_01993 at 2140.808 kb on + strand, within CCNA_01993 at 2140.808 kb on + strand, within CCNA_01993 at 2140.816 kb on - strand, within CCNA_01993 at 2140.816 kb on - strand, within CCNA_01993 at 2140.816 kb on - strand, within CCNA_01993 at 2140.816 kb on - strand, within CCNA_01993 at 2140.816 kb on - strand, within CCNA_01993 at 2140.816 kb on - strand, within CCNA_01993 at 2140.816 kb on - strand, within CCNA_01993 at 2140.816 kb on - strand, within CCNA_01993 at 2140.816 kb on - strand, within CCNA_01993 at 2140.816 kb on - strand, within CCNA_01993 at 2140.952 kb on - strand at 2142.113 kb on + strand at 2142.337 kb on - strand, within CCNA_01995 at 2142.337 kb on - strand, within CCNA_01995 at 2142.904 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,139,946 - CCNA_01993 0.19 +1.5 2,139,946 - CCNA_01993 0.19 +0.0 2,140,014 - CCNA_01993 0.25 -2.4 2,140,017 + CCNA_01993 0.25 -3.8 2,140,032 - CCNA_01993 0.26 +0.0 2,140,032 - CCNA_01993 0.26 -0.2 2,140,032 - CCNA_01993 0.26 +0.3 2,140,033 - CCNA_01993 0.26 -0.3 2,140,061 + CCNA_01993 0.28 -0.9 2,140,061 + CCNA_01993 0.28 -2.2 2,140,069 - CCNA_01993 0.29 +0.4 2,140,069 - CCNA_01993 0.29 +1.8 2,140,069 - CCNA_01993 0.29 -1.1 2,140,069 - CCNA_01993 0.29 +0.4 2,140,114 - CCNA_01993 0.33 +0.8 2,140,114 - CCNA_01993 0.33 -0.6 2,140,192 + CCNA_01993 0.39 -2.6 2,140,192 + CCNA_01993 0.39 -1.2 2,140,192 + CCNA_01993 0.39 -2.0 2,140,200 - CCNA_01993 0.39 +1.0 2,140,220 - CCNA_01993 0.41 +0.1 2,140,275 - CCNA_01993 0.45 +0.3 2,140,275 - CCNA_01993 0.45 +0.0 2,140,337 - CCNA_01993 0.50 +1.2 2,140,344 - CCNA_01993 0.51 -0.1 2,140,363 - CCNA_01993 0.52 +0.9 2,140,406 - CCNA_01993 0.55 -0.0 2,140,503 - CCNA_01993 0.63 -2.1 2,140,560 - CCNA_01993 0.68 -2.2 2,140,801 - CCNA_01993 0.86 -2.2 2,140,801 - CCNA_01993 0.86 -0.3 2,140,808 + CCNA_01993 0.87 -1.2 2,140,808 + CCNA_01993 0.87 -2.3 2,140,808 + CCNA_01993 0.87 -1.6 2,140,816 - CCNA_01993 0.88 -0.9 2,140,816 - CCNA_01993 0.88 -1.1 2,140,816 - CCNA_01993 0.88 -0.3 2,140,816 - CCNA_01993 0.88 -0.1 2,140,816 - CCNA_01993 0.88 -3.1 2,140,816 - CCNA_01993 0.88 -0.9 2,140,816 - CCNA_01993 0.88 -2.4 2,140,816 - CCNA_01993 0.88 +0.3 2,140,816 - CCNA_01993 0.88 -0.2 2,140,816 - CCNA_01993 0.88 -0.4 2,140,952 - +0.7 2,142,113 + +2.3 2,142,337 - CCNA_01995 0.28 -2.6 2,142,337 - CCNA_01995 0.28 -1.8 2,142,904 - +1.6
Or see this region's nucleotide sequence