Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01974

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01972 and CCNA_01973 are separated by 22 nucleotidesCCNA_01973 and CCNA_01974 are separated by 115 nucleotidesCCNA_01974 and CCNA_01975 are separated by 8 nucleotides CCNA_01972: CCNA_01972 - anthranilate synthase component I, at 2,117,381 to 2,118,922 _01972 CCNA_01973: CCNA_01973 - hypothetical protein, at 2,118,945 to 2,119,154 _01973 CCNA_01974: CCNA_01974 - anthranilate synthase component II/para-aminobenzoate synthase glutamine amidotransferase component II, at 2,119,270 to 2,119,866 _01974 CCNA_01975: CCNA_01975 - anthranilate phosphoribosyltransferase, at 2,119,875 to 2,120,900 _01975 Position (kb) 2119 2120Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2118.381 kb on + strand, within CCNA_01972at 2118.381 kb on + strand, within CCNA_01972at 2118.389 kb on - strand, within CCNA_01972at 2118.402 kb on + strand, within CCNA_01972at 2118.406 kb on + strand, within CCNA_01972at 2118.501 kb on + strand, within CCNA_01972at 2118.501 kb on + strand, within CCNA_01972at 2118.501 kb on + strand, within CCNA_01972at 2118.526 kb on + strand, within CCNA_01972at 2118.538 kb on + strand, within CCNA_01972at 2118.594 kb on + strand, within CCNA_01972at 2118.602 kb on - strand, within CCNA_01972at 2118.602 kb on - strand, within CCNA_01972at 2118.653 kb on + strand, within CCNA_01972at 2118.659 kb on - strand, within CCNA_01972at 2118.674 kb on - strand, within CCNA_01972at 2118.685 kb on + strand, within CCNA_01972at 2118.691 kb on - strand, within CCNA_01972at 2118.752 kb on + strand, within CCNA_01972at 2118.805 kb on + strandat 2118.813 kb on - strandat 2118.863 kb on + strandat 2118.868 kb on + strandat 2118.881 kb on + strandat 2119.002 kb on + strand, within CCNA_01973at 2119.010 kb on - strand, within CCNA_01973at 2119.018 kb on - strand, within CCNA_01973at 2119.085 kb on + strand, within CCNA_01973at 2119.085 kb on + strand, within CCNA_01973at 2119.085 kb on + strand, within CCNA_01973at 2119.085 kb on + strand, within CCNA_01973at 2119.093 kb on - strand, within CCNA_01973at 2119.093 kb on - strand, within CCNA_01973at 2119.100 kb on - strand, within CCNA_01973at 2119.115 kb on - strand, within CCNA_01973at 2119.128 kb on + strand, within CCNA_01973at 2119.136 kb on - strandat 2119.148 kb on + strandat 2119.156 kb on - strandat 2119.166 kb on + strandat 2119.183 kb on + strandat 2119.191 kb on - strandat 2119.217 kb on + strandat 2119.220 kb on + strandat 2119.228 kb on - strandat 2119.240 kb on + strandat 2119.240 kb on + strandat 2119.306 kb on - strandat 2119.312 kb on + strandat 2119.322 kb on + strandat 2119.356 kb on + strand, within CCNA_01974at 2119.366 kb on + strand, within CCNA_01974at 2119.443 kb on + strand, within CCNA_01974at 2119.462 kb on + strand, within CCNA_01974at 2119.478 kb on + strand, within CCNA_01974at 2119.505 kb on + strand, within CCNA_01974at 2119.556 kb on - strand, within CCNA_01974at 2119.578 kb on + strand, within CCNA_01974at 2119.586 kb on - strand, within CCNA_01974at 2119.586 kb on - strand, within CCNA_01974at 2119.596 kb on - strand, within CCNA_01974at 2119.599 kb on + strand, within CCNA_01974at 2119.611 kb on + strand, within CCNA_01974at 2119.611 kb on + strand, within CCNA_01974at 2119.618 kb on + strand, within CCNA_01974at 2119.631 kb on - strand, within CCNA_01974at 2119.653 kb on + strand, within CCNA_01974at 2119.653 kb on - strand, within CCNA_01974at 2119.655 kb on + strand, within CCNA_01974at 2119.688 kb on + strand, within CCNA_01974at 2119.688 kb on + strand, within CCNA_01974at 2119.688 kb on + strand, within CCNA_01974at 2119.688 kb on + strand, within CCNA_01974at 2119.688 kb on + strand, within CCNA_01974at 2119.722 kb on + strand, within CCNA_01974at 2119.722 kb on + strand, within CCNA_01974at 2119.722 kb on + strand, within CCNA_01974at 2119.730 kb on - strand, within CCNA_01974at 2119.730 kb on - strand, within CCNA_01974at 2119.737 kb on + strand, within CCNA_01974at 2119.740 kb on - strand, within CCNA_01974at 2119.745 kb on - strand, within CCNA_01974at 2119.745 kb on - strand, within CCNA_01974at 2119.796 kb on + strand, within CCNA_01974at 2119.806 kb on + strand, within CCNA_01974at 2119.833 kb on - strandat 2119.860 kb on + strandat 2119.860 kb on + strandat 2119.860 kb on + strandat 2119.860 kb on + strandat 2119.875 kb on - strandat 2119.885 kb on + strandat 2119.886 kb on + strandat 2119.894 kb on - strandat 2119.917 kb on + strandat 2119.939 kb on + strandat 2119.998 kb on + strand, within CCNA_01975at 2120.145 kb on + strand, within CCNA_01975at 2120.155 kb on - strand, within CCNA_01975at 2120.196 kb on - strand, within CCNA_01975at 2120.255 kb on - strand, within CCNA_01975at 2120.294 kb on + strand, within CCNA_01975at 2120.301 kb on + strand, within CCNA_01975at 2120.302 kb on - strand, within CCNA_01975at 2120.306 kb on + strand, within CCNA_01975at 2120.323 kb on + strand, within CCNA_01975at 2120.400 kb on + strand, within CCNA_01975at 2120.400 kb on + strand, within CCNA_01975at 2120.408 kb on - strand, within CCNA_01975at 2120.408 kb on - strand, within CCNA_01975at 2120.444 kb on - strand, within CCNA_01975at 2120.476 kb on + strand, within CCNA_01975at 2120.496 kb on + strand, within CCNA_01975at 2120.496 kb on + strand, within CCNA_01975at 2120.504 kb on - strand, within CCNA_01975at 2120.522 kb on + strand, within CCNA_01975at 2120.525 kb on - strand, within CCNA_01975at 2120.532 kb on + strand, within CCNA_01975at 2120.612 kb on + strand, within CCNA_01975at 2120.632 kb on + strand, within CCNA_01975at 2120.637 kb on + strand, within CCNA_01975at 2120.697 kb on + strand, within CCNA_01975at 2120.697 kb on + strand, within CCNA_01975at 2120.697 kb on + strand, within CCNA_01975at 2120.697 kb on + strand, within CCNA_01975at 2120.699 kb on + strand, within CCNA_01975at 2120.700 kb on - strand, within CCNA_01975at 2120.706 kb on + strand, within CCNA_01975at 2120.745 kb on + strand, within CCNA_01975at 2120.748 kb on - strand, within CCNA_01975at 2120.758 kb on - strand, within CCNA_01975at 2120.787 kb on + strand, within CCNA_01975at 2120.787 kb on + strand, within CCNA_01975at 2120.787 kb on + strand, within CCNA_01975at 2120.795 kb on - strand, within CCNA_01975at 2120.795 kb on - strand, within CCNA_01975at 2120.795 kb on - strand, within CCNA_01975at 2120.806 kb on - strandat 2120.806 kb on - strandat 2120.820 kb on + strandat 2120.843 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,118,381 + CCNA_01972 0.65 -2.7
2,118,381 + CCNA_01972 0.65 -2.7
2,118,389 - CCNA_01972 0.65 -1.3
2,118,402 + CCNA_01972 0.66 -3.6
2,118,406 + CCNA_01972 0.66 -3.0
2,118,501 + CCNA_01972 0.73 -1.6
2,118,501 + CCNA_01972 0.73 -2.1
2,118,501 + CCNA_01972 0.73 -2.1
2,118,526 + CCNA_01972 0.74 -4.9
2,118,538 + CCNA_01972 0.75 -2.5
2,118,594 + CCNA_01972 0.79 -2.5
2,118,602 - CCNA_01972 0.79 +0.3
2,118,602 - CCNA_01972 0.79 -2.0
2,118,653 + CCNA_01972 0.82 -2.6
2,118,659 - CCNA_01972 0.83 -2.4
2,118,674 - CCNA_01972 0.84 -3.1
2,118,685 + CCNA_01972 0.85 -2.4
2,118,691 - CCNA_01972 0.85 -2.6
2,118,752 + CCNA_01972 0.89 -2.9
2,118,805 + -3.5
2,118,813 - -1.9
2,118,863 + -5.2
2,118,868 + -2.7
2,118,881 + -3.7
2,119,002 + CCNA_01973 0.27 +1.5
2,119,010 - CCNA_01973 0.31 +0.1
2,119,018 - CCNA_01973 0.35 -0.2
2,119,085 + CCNA_01973 0.67 +1.0
2,119,085 + CCNA_01973 0.67 +0.5
2,119,085 + CCNA_01973 0.67 -0.5
2,119,085 + CCNA_01973 0.67 +0.7
2,119,093 - CCNA_01973 0.70 +0.8
2,119,093 - CCNA_01973 0.70 +1.1
2,119,100 - CCNA_01973 0.74 +1.1
2,119,115 - CCNA_01973 0.81 -0.0
2,119,128 + CCNA_01973 0.87 +1.1
2,119,136 - -0.9
2,119,148 + -0.0
2,119,156 - -1.4
2,119,166 + -1.1
2,119,183 + +0.6
2,119,191 - -0.6
2,119,217 + -0.8
2,119,220 + -0.7
2,119,228 - -0.3
2,119,240 + -0.1
2,119,240 + -0.5
2,119,306 - -2.7
2,119,312 + -2.2
2,119,322 + -3.7
2,119,356 + CCNA_01974 0.14 -3.9
2,119,366 + CCNA_01974 0.16 -2.8
2,119,443 + CCNA_01974 0.29 -3.0
2,119,462 + CCNA_01974 0.32 -2.5
2,119,478 + CCNA_01974 0.35 -3.5
2,119,505 + CCNA_01974 0.39 -3.0
2,119,556 - CCNA_01974 0.48 -2.5
2,119,578 + CCNA_01974 0.52 -3.0
2,119,586 - CCNA_01974 0.53 -3.4
2,119,586 - CCNA_01974 0.53 -1.8
2,119,596 - CCNA_01974 0.55 -3.5
2,119,599 + CCNA_01974 0.55 -2.5
2,119,611 + CCNA_01974 0.57 -3.9
2,119,611 + CCNA_01974 0.57 -3.3
2,119,618 + CCNA_01974 0.58 -2.2
2,119,631 - CCNA_01974 0.60 -2.0
2,119,653 + CCNA_01974 0.64 -2.8
2,119,653 - CCNA_01974 0.64 -4.1
2,119,655 + CCNA_01974 0.64 -2.3
2,119,688 + CCNA_01974 0.70 -1.9
2,119,688 + CCNA_01974 0.70 -3.5
2,119,688 + CCNA_01974 0.70 -2.5
2,119,688 + CCNA_01974 0.70 -3.5
2,119,688 + CCNA_01974 0.70 -1.6
2,119,722 + CCNA_01974 0.76 -1.6
2,119,722 + CCNA_01974 0.76 -3.7
2,119,722 + CCNA_01974 0.76 -3.0
2,119,730 - CCNA_01974 0.77 -2.2
2,119,730 - CCNA_01974 0.77 -1.3
2,119,737 + CCNA_01974 0.78 -3.0
2,119,740 - CCNA_01974 0.79 -3.1
2,119,745 - CCNA_01974 0.80 -1.3
2,119,745 - CCNA_01974 0.80 -2.8
2,119,796 + CCNA_01974 0.88 -2.4
2,119,806 + CCNA_01974 0.90 -2.8
2,119,833 - -1.6
2,119,860 + +1.0
2,119,860 + +0.9
2,119,860 + +1.1
2,119,860 + +0.2
2,119,875 - -0.0
2,119,885 + -4.8
2,119,886 + -0.2
2,119,894 - -0.4
2,119,917 + -3.8
2,119,939 + -1.3
2,119,998 + CCNA_01975 0.12 -1.3
2,120,145 + CCNA_01975 0.26 -2.3
2,120,155 - CCNA_01975 0.27 -2.3
2,120,196 - CCNA_01975 0.31 -0.9
2,120,255 - CCNA_01975 0.37 -2.7
2,120,294 + CCNA_01975 0.41 -5.2
2,120,301 + CCNA_01975 0.42 -2.5
2,120,302 - CCNA_01975 0.42 -2.4
2,120,306 + CCNA_01975 0.42 -2.6
2,120,323 + CCNA_01975 0.44 -3.6
2,120,400 + CCNA_01975 0.51 -2.6
2,120,400 + CCNA_01975 0.51 -2.7
2,120,408 - CCNA_01975 0.52 -1.3
2,120,408 - CCNA_01975 0.52 -1.2
2,120,444 - CCNA_01975 0.55 -3.4
2,120,476 + CCNA_01975 0.59 -3.2
2,120,496 + CCNA_01975 0.61 -1.9
2,120,496 + CCNA_01975 0.61 -2.1
2,120,504 - CCNA_01975 0.61 -1.2
2,120,522 + CCNA_01975 0.63 -3.3
2,120,525 - CCNA_01975 0.63 -1.4
2,120,532 + CCNA_01975 0.64 -0.9
2,120,612 + CCNA_01975 0.72 -2.7
2,120,632 + CCNA_01975 0.74 -1.9
2,120,637 + CCNA_01975 0.74 -3.1
2,120,697 + CCNA_01975 0.80 -3.1
2,120,697 + CCNA_01975 0.80 -3.4
2,120,697 + CCNA_01975 0.80 -2.8
2,120,697 + CCNA_01975 0.80 -2.5
2,120,699 + CCNA_01975 0.80 -2.5
2,120,700 - CCNA_01975 0.80 -2.2
2,120,706 + CCNA_01975 0.81 -3.3
2,120,745 + CCNA_01975 0.85 -0.3
2,120,748 - CCNA_01975 0.85 -1.4
2,120,758 - CCNA_01975 0.86 -0.8
2,120,787 + CCNA_01975 0.89 -1.4
2,120,787 + CCNA_01975 0.89 -2.2
2,120,787 + CCNA_01975 0.89 -1.1
2,120,795 - CCNA_01975 0.90 -1.7
2,120,795 - CCNA_01975 0.90 -2.6
2,120,795 - CCNA_01975 0.90 -2.9
2,120,806 - -0.7
2,120,806 - +0.3
2,120,820 + -4.4
2,120,843 + +0.2

Or see this region's nucleotide sequence