Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01756 and CCNA_01757 are separated by 63 nucleotides CCNA_01757 and CCNA_01758 are separated by 44 nucleotides CCNA_01758 and CCNA_01759 overlap by 4 nucleotides
CCNA_01756: CCNA_01756 - hypothetical protein, at 1,883,535 to 1,883,654
_01756
CCNA_01757: CCNA_01757 - dimethyladenosine transferase, at 1,883,718 to 1,884,548
_01757
CCNA_01758: CCNA_01758 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,884,593 to 1,885,594
_01758
CCNA_01759: CCNA_01759 - peptidyl-prolyl cis-trans isomerase, at 1,885,591 to 1,886,940
_01759
Position (kb)
1884
1885
1886 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1883.631 kb on + strand, within CCNA_01756 at 1883.636 kb on + strand, within CCNA_01756 at 1883.676 kb on - strand at 1883.726 kb on - strand at 1883.738 kb on + strand at 1883.943 kb on - strand, within CCNA_01757 at 1884.027 kb on - strand, within CCNA_01757 at 1884.037 kb on - strand, within CCNA_01757 at 1884.357 kb on - strand, within CCNA_01757 at 1884.383 kb on - strand, within CCNA_01757 at 1884.556 kb on + strand at 1884.556 kb on + strand at 1884.586 kb on - strand at 1884.598 kb on - strand at 1884.598 kb on - strand at 1884.598 kb on - strand at 1885.596 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,883,631 + CCNA_01756 0.80 +1.2 1,883,636 + CCNA_01756 0.84 -1.1 1,883,676 - +1.1 1,883,726 - +1.2 1,883,738 + -0.7 1,883,943 - CCNA_01757 0.27 -1.5 1,884,027 - CCNA_01757 0.37 -1.6 1,884,037 - CCNA_01757 0.38 -2.0 1,884,357 - CCNA_01757 0.77 -1.0 1,884,383 - CCNA_01757 0.80 -1.0 1,884,556 + +0.9 1,884,556 + -0.1 1,884,586 - +2.0 1,884,598 - +0.4 1,884,598 - +1.5 1,884,598 - +1.5 1,885,596 - +1.8
Or see this region's nucleotide sequence