Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01551

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01550 and CCNA_01551 are separated by 218 nucleotidesCCNA_01551 and CCNA_01552 are separated by 172 nucleotides CCNA_01550: CCNA_01550 - sulfate adenylyltransferase subunit 2, at 1,664,281 to 1,665,261 _01550 CCNA_01551: CCNA_01551 - hypothetical protein, at 1,665,480 to 1,665,698 _01551 CCNA_01552: CCNA_01552 - polar localization protein TipN, at 1,665,871 to 1,668,519 _01552 Position (kb) 1665 1666Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1664.501 kb on - strand, within CCNA_01550at 1664.595 kb on - strand, within CCNA_01550at 1664.675 kb on + strand, within CCNA_01550at 1664.675 kb on + strand, within CCNA_01550at 1664.691 kb on + strand, within CCNA_01550at 1664.691 kb on - strand, within CCNA_01550at 1664.741 kb on - strand, within CCNA_01550at 1664.772 kb on - strand, within CCNA_01550at 1664.795 kb on - strand, within CCNA_01550at 1664.829 kb on + strand, within CCNA_01550at 1664.830 kb on + strand, within CCNA_01550at 1664.838 kb on + strand, within CCNA_01550at 1664.855 kb on + strand, within CCNA_01550at 1664.867 kb on + strand, within CCNA_01550at 1664.867 kb on + strand, within CCNA_01550at 1664.872 kb on + strand, within CCNA_01550at 1664.875 kb on - strand, within CCNA_01550at 1664.939 kb on - strand, within CCNA_01550at 1664.943 kb on + strand, within CCNA_01550at 1664.946 kb on - strand, within CCNA_01550at 1664.967 kb on + strand, within CCNA_01550at 1664.986 kb on + strand, within CCNA_01550at 1664.996 kb on + strand, within CCNA_01550at 1665.012 kb on - strand, within CCNA_01550at 1665.035 kb on - strand, within CCNA_01550at 1665.060 kb on + strand, within CCNA_01550at 1665.068 kb on + strand, within CCNA_01550at 1665.071 kb on - strand, within CCNA_01550at 1665.071 kb on - strand, within CCNA_01550at 1665.073 kb on - strand, within CCNA_01550at 1665.099 kb on - strand, within CCNA_01550at 1665.132 kb on + strand, within CCNA_01550at 1665.143 kb on + strand, within CCNA_01550at 1665.206 kb on - strandat 1665.257 kb on + strandat 1665.316 kb on + strandat 1665.316 kb on + strandat 1665.317 kb on + strandat 1665.329 kb on + strandat 1665.337 kb on - strandat 1665.394 kb on - strandat 1665.484 kb on + strandat 1665.527 kb on + strand, within CCNA_01551at 1665.535 kb on - strand, within CCNA_01551at 1665.542 kb on - strand, within CCNA_01551at 1665.601 kb on - strand, within CCNA_01551at 1665.601 kb on - strand, within CCNA_01551at 1665.602 kb on - strand, within CCNA_01551at 1665.603 kb on + strand, within CCNA_01551at 1665.611 kb on - strand, within CCNA_01551at 1665.689 kb on - strandat 1665.689 kb on - strandat 1665.765 kb on + strandat 1665.765 kb on + strandat 1665.772 kb on + strandat 1665.790 kb on + strandat 1665.811 kb on + strandat 1665.819 kb on - strandat 1665.839 kb on + strandat 1665.936 kb on + strandat 1665.936 kb on + strandat 1665.936 kb on + strandat 1665.936 kb on + strandat 1665.936 kb on + strandat 1665.937 kb on + strandat 1665.944 kb on - strandat 1665.944 kb on - strandat 1665.963 kb on + strandat 1665.963 kb on - strandat 1666.043 kb on - strandat 1666.048 kb on + strandat 1666.089 kb on + strandat 1666.119 kb on + strandat 1666.265 kb on + strand, within CCNA_01552at 1666.265 kb on + strand, within CCNA_01552at 1666.280 kb on - strand, within CCNA_01552at 1666.308 kb on + strand, within CCNA_01552at 1666.308 kb on + strand, within CCNA_01552at 1666.308 kb on + strand, within CCNA_01552at 1666.308 kb on + strand, within CCNA_01552at 1666.354 kb on + strand, within CCNA_01552at 1666.445 kb on + strand, within CCNA_01552at 1666.460 kb on + strand, within CCNA_01552at 1666.462 kb on + strand, within CCNA_01552at 1666.520 kb on + strand, within CCNA_01552at 1666.542 kb on + strand, within CCNA_01552at 1666.555 kb on + strand, within CCNA_01552

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,664,501 - CCNA_01550 0.22 -3.0
1,664,595 - CCNA_01550 0.32 -3.0
1,664,675 + CCNA_01550 0.40 -0.3
1,664,675 + CCNA_01550 0.40 -3.5
1,664,691 + CCNA_01550 0.42 -0.7
1,664,691 - CCNA_01550 0.42 -2.8
1,664,741 - CCNA_01550 0.47 -2.2
1,664,772 - CCNA_01550 0.50 -3.2
1,664,795 - CCNA_01550 0.52 -2.2
1,664,829 + CCNA_01550 0.56 -1.1
1,664,830 + CCNA_01550 0.56 -0.8
1,664,838 + CCNA_01550 0.57 -1.6
1,664,855 + CCNA_01550 0.59 -0.8
1,664,867 + CCNA_01550 0.60 -4.7
1,664,867 + CCNA_01550 0.60 -2.3
1,664,872 + CCNA_01550 0.60 -2.3
1,664,875 - CCNA_01550 0.61 -3.3
1,664,939 - CCNA_01550 0.67 -1.3
1,664,943 + CCNA_01550 0.67 -2.1
1,664,946 - CCNA_01550 0.68 -3.7
1,664,967 + CCNA_01550 0.70 -0.8
1,664,986 + CCNA_01550 0.72 -1.3
1,664,996 + CCNA_01550 0.73 -1.9
1,665,012 - CCNA_01550 0.75 -2.8
1,665,035 - CCNA_01550 0.77 -2.1
1,665,060 + CCNA_01550 0.79 -3.0
1,665,068 + CCNA_01550 0.80 -1.1
1,665,071 - CCNA_01550 0.81 -3.1
1,665,071 - CCNA_01550 0.81 -1.8
1,665,073 - CCNA_01550 0.81 -1.6
1,665,099 - CCNA_01550 0.83 +0.2
1,665,132 + CCNA_01550 0.87 -1.1
1,665,143 + CCNA_01550 0.88 +0.5
1,665,206 - -2.9
1,665,257 + -2.0
1,665,316 + -2.1
1,665,316 + -1.6
1,665,317 + +0.2
1,665,329 + -0.9
1,665,337 - -0.9
1,665,394 - -0.5
1,665,484 + -0.9
1,665,527 + CCNA_01551 0.21 -0.2
1,665,535 - CCNA_01551 0.25 -1.1
1,665,542 - CCNA_01551 0.28 -0.1
1,665,601 - CCNA_01551 0.55 +0.3
1,665,601 - CCNA_01551 0.55 -1.0
1,665,602 - CCNA_01551 0.56 +0.3
1,665,603 + CCNA_01551 0.56 -1.4
1,665,611 - CCNA_01551 0.60 +0.6
1,665,689 - -0.9
1,665,689 - -1.1
1,665,765 + -0.7
1,665,765 + +1.3
1,665,772 + +0.6
1,665,790 + +1.3
1,665,811 + -0.2
1,665,819 - -3.3
1,665,839 + -0.7
1,665,936 + +1.7
1,665,936 + +0.3
1,665,936 + +1.6
1,665,936 + +1.9
1,665,936 + -0.1
1,665,937 + +0.8
1,665,944 - -0.3
1,665,944 - +0.2
1,665,963 + +1.3
1,665,963 - -0.5
1,666,043 - -0.7
1,666,048 + +0.8
1,666,089 + +1.2
1,666,119 + +1.4
1,666,265 + CCNA_01552 0.15 +1.8
1,666,265 + CCNA_01552 0.15 +0.6
1,666,280 - CCNA_01552 0.15 -0.9
1,666,308 + CCNA_01552 0.16 -0.3
1,666,308 + CCNA_01552 0.16 +1.0
1,666,308 + CCNA_01552 0.16 -0.7
1,666,308 + CCNA_01552 0.16 +1.0
1,666,354 + CCNA_01552 0.18 +2.3
1,666,445 + CCNA_01552 0.22 +0.8
1,666,460 + CCNA_01552 0.22 -2.2
1,666,462 + CCNA_01552 0.22 +1.6
1,666,520 + CCNA_01552 0.24 -0.6
1,666,542 + CCNA_01552 0.25 +0.9
1,666,555 + CCNA_01552 0.26 -0.2

Or see this region's nucleotide sequence