Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01550 and CCNA_01551 are separated by 218 nucleotides CCNA_01551 and CCNA_01552 are separated by 172 nucleotides
CCNA_01550: CCNA_01550 - sulfate adenylyltransferase subunit 2, at 1,664,281 to 1,665,261
_01550
CCNA_01551: CCNA_01551 - hypothetical protein, at 1,665,480 to 1,665,698
_01551
CCNA_01552: CCNA_01552 - polar localization protein TipN, at 1,665,871 to 1,668,519
_01552
Position (kb)
1665
1666 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1664.501 kb on - strand, within CCNA_01550 at 1664.595 kb on - strand, within CCNA_01550 at 1664.675 kb on + strand, within CCNA_01550 at 1664.675 kb on + strand, within CCNA_01550 at 1664.691 kb on + strand, within CCNA_01550 at 1664.691 kb on - strand, within CCNA_01550 at 1664.741 kb on - strand, within CCNA_01550 at 1664.772 kb on - strand, within CCNA_01550 at 1664.795 kb on - strand, within CCNA_01550 at 1664.829 kb on + strand, within CCNA_01550 at 1664.830 kb on + strand, within CCNA_01550 at 1664.838 kb on + strand, within CCNA_01550 at 1664.855 kb on + strand, within CCNA_01550 at 1664.867 kb on + strand, within CCNA_01550 at 1664.867 kb on + strand, within CCNA_01550 at 1664.872 kb on + strand, within CCNA_01550 at 1664.875 kb on - strand, within CCNA_01550 at 1664.939 kb on - strand, within CCNA_01550 at 1664.943 kb on + strand, within CCNA_01550 at 1664.946 kb on - strand, within CCNA_01550 at 1664.967 kb on + strand, within CCNA_01550 at 1664.986 kb on + strand, within CCNA_01550 at 1664.996 kb on + strand, within CCNA_01550 at 1665.012 kb on - strand, within CCNA_01550 at 1665.035 kb on - strand, within CCNA_01550 at 1665.060 kb on + strand, within CCNA_01550 at 1665.068 kb on + strand, within CCNA_01550 at 1665.071 kb on - strand, within CCNA_01550 at 1665.071 kb on - strand, within CCNA_01550 at 1665.073 kb on - strand, within CCNA_01550 at 1665.099 kb on - strand, within CCNA_01550 at 1665.132 kb on + strand, within CCNA_01550 at 1665.143 kb on + strand, within CCNA_01550 at 1665.206 kb on - strand at 1665.257 kb on + strand at 1665.316 kb on + strand at 1665.316 kb on + strand at 1665.317 kb on + strand at 1665.329 kb on + strand at 1665.337 kb on - strand at 1665.394 kb on - strand at 1665.484 kb on + strand at 1665.527 kb on + strand, within CCNA_01551 at 1665.535 kb on - strand, within CCNA_01551 at 1665.542 kb on - strand, within CCNA_01551 at 1665.601 kb on - strand, within CCNA_01551 at 1665.601 kb on - strand, within CCNA_01551 at 1665.602 kb on - strand, within CCNA_01551 at 1665.603 kb on + strand, within CCNA_01551 at 1665.611 kb on - strand, within CCNA_01551 at 1665.689 kb on - strand at 1665.689 kb on - strand at 1665.765 kb on + strand at 1665.765 kb on + strand at 1665.772 kb on + strand at 1665.790 kb on + strand at 1665.811 kb on + strand at 1665.819 kb on - strand at 1665.839 kb on + strand at 1665.936 kb on + strand at 1665.936 kb on + strand at 1665.936 kb on + strand at 1665.936 kb on + strand at 1665.936 kb on + strand at 1665.937 kb on + strand at 1665.944 kb on - strand at 1665.944 kb on - strand at 1665.963 kb on + strand at 1665.963 kb on - strand at 1666.043 kb on - strand at 1666.048 kb on + strand at 1666.089 kb on + strand at 1666.119 kb on + strand at 1666.265 kb on + strand, within CCNA_01552 at 1666.265 kb on + strand, within CCNA_01552 at 1666.280 kb on - strand, within CCNA_01552 at 1666.308 kb on + strand, within CCNA_01552 at 1666.308 kb on + strand, within CCNA_01552 at 1666.308 kb on + strand, within CCNA_01552 at 1666.308 kb on + strand, within CCNA_01552 at 1666.354 kb on + strand, within CCNA_01552 at 1666.445 kb on + strand, within CCNA_01552 at 1666.460 kb on + strand, within CCNA_01552 at 1666.462 kb on + strand, within CCNA_01552 at 1666.520 kb on + strand, within CCNA_01552 at 1666.542 kb on + strand, within CCNA_01552 at 1666.555 kb on + strand, within CCNA_01552
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,664,501 - CCNA_01550 0.22 -3.0 1,664,595 - CCNA_01550 0.32 -3.0 1,664,675 + CCNA_01550 0.40 -0.3 1,664,675 + CCNA_01550 0.40 -3.5 1,664,691 + CCNA_01550 0.42 -0.7 1,664,691 - CCNA_01550 0.42 -2.8 1,664,741 - CCNA_01550 0.47 -2.2 1,664,772 - CCNA_01550 0.50 -3.2 1,664,795 - CCNA_01550 0.52 -2.2 1,664,829 + CCNA_01550 0.56 -1.1 1,664,830 + CCNA_01550 0.56 -0.8 1,664,838 + CCNA_01550 0.57 -1.6 1,664,855 + CCNA_01550 0.59 -0.8 1,664,867 + CCNA_01550 0.60 -4.7 1,664,867 + CCNA_01550 0.60 -2.3 1,664,872 + CCNA_01550 0.60 -2.3 1,664,875 - CCNA_01550 0.61 -3.3 1,664,939 - CCNA_01550 0.67 -1.3 1,664,943 + CCNA_01550 0.67 -2.1 1,664,946 - CCNA_01550 0.68 -3.7 1,664,967 + CCNA_01550 0.70 -0.8 1,664,986 + CCNA_01550 0.72 -1.3 1,664,996 + CCNA_01550 0.73 -1.9 1,665,012 - CCNA_01550 0.75 -2.8 1,665,035 - CCNA_01550 0.77 -2.1 1,665,060 + CCNA_01550 0.79 -3.0 1,665,068 + CCNA_01550 0.80 -1.1 1,665,071 - CCNA_01550 0.81 -3.1 1,665,071 - CCNA_01550 0.81 -1.8 1,665,073 - CCNA_01550 0.81 -1.6 1,665,099 - CCNA_01550 0.83 +0.2 1,665,132 + CCNA_01550 0.87 -1.1 1,665,143 + CCNA_01550 0.88 +0.5 1,665,206 - -2.9 1,665,257 + -2.0 1,665,316 + -2.1 1,665,316 + -1.6 1,665,317 + +0.2 1,665,329 + -0.9 1,665,337 - -0.9 1,665,394 - -0.5 1,665,484 + -0.9 1,665,527 + CCNA_01551 0.21 -0.2 1,665,535 - CCNA_01551 0.25 -1.1 1,665,542 - CCNA_01551 0.28 -0.1 1,665,601 - CCNA_01551 0.55 +0.3 1,665,601 - CCNA_01551 0.55 -1.0 1,665,602 - CCNA_01551 0.56 +0.3 1,665,603 + CCNA_01551 0.56 -1.4 1,665,611 - CCNA_01551 0.60 +0.6 1,665,689 - -0.9 1,665,689 - -1.1 1,665,765 + -0.7 1,665,765 + +1.3 1,665,772 + +0.6 1,665,790 + +1.3 1,665,811 + -0.2 1,665,819 - -3.3 1,665,839 + -0.7 1,665,936 + +1.7 1,665,936 + +0.3 1,665,936 + +1.6 1,665,936 + +1.9 1,665,936 + -0.1 1,665,937 + +0.8 1,665,944 - -0.3 1,665,944 - +0.2 1,665,963 + +1.3 1,665,963 - -0.5 1,666,043 - -0.7 1,666,048 + +0.8 1,666,089 + +1.2 1,666,119 + +1.4 1,666,265 + CCNA_01552 0.15 +1.8 1,666,265 + CCNA_01552 0.15 +0.6 1,666,280 - CCNA_01552 0.15 -0.9 1,666,308 + CCNA_01552 0.16 -0.3 1,666,308 + CCNA_01552 0.16 +1.0 1,666,308 + CCNA_01552 0.16 -0.7 1,666,308 + CCNA_01552 0.16 +1.0 1,666,354 + CCNA_01552 0.18 +2.3 1,666,445 + CCNA_01552 0.22 +0.8 1,666,460 + CCNA_01552 0.22 -2.2 1,666,462 + CCNA_01552 0.22 +1.6 1,666,520 + CCNA_01552 0.24 -0.6 1,666,542 + CCNA_01552 0.25 +0.9 1,666,555 + CCNA_01552 0.26 -0.2
Or see this region's nucleotide sequence