Experiment: R2A with nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24435 and CA265_RS24440 are separated by 10 nucleotides CA265_RS24440 and CA265_RS24445 are separated by 31 nucleotides CA265_RS24445 and CA265_RS24450 are separated by 1 nucleotides CA265_RS24450 and CA265_RS24455 are separated by 372 nucleotides
CA265_RS24435: CA265_RS24435 - hypothetical protein, at 5,950,898 to 5,952,796
_RS24435
CA265_RS24440: CA265_RS24440 - hypothetical protein, at 5,952,807 to 5,953,856
_RS24440
CA265_RS24445: CA265_RS24445 - hypothetical protein, at 5,953,888 to 5,954,124
_RS24445
CA265_RS24450: CA265_RS24450 - hypothetical protein, at 5,954,126 to 5,954,431
_RS24450
CA265_RS24455: CA265_RS24455 - hypothetical protein, at 5,954,804 to 5,955,169
_RS24455
Position (kb) 5952
5953
5954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5951.928 kb on - strand, within CA265_RS24435 at 5951.928 kb on - strand, within CA265_RS24435 at 5951.981 kb on - strand, within CA265_RS24435 at 5951.981 kb on - strand, within CA265_RS24435 at 5951.995 kb on - strand, within CA265_RS24435 at 5952.076 kb on - strand, within CA265_RS24435 at 5952.203 kb on - strand, within CA265_RS24435 at 5952.306 kb on - strand, within CA265_RS24435 at 5952.368 kb on - strand, within CA265_RS24435 at 5952.368 kb on - strand, within CA265_RS24435 at 5952.463 kb on - strand, within CA265_RS24435 at 5952.508 kb on - strand, within CA265_RS24435 at 5952.599 kb on - strand, within CA265_RS24435 at 5952.610 kb on - strand at 5952.610 kb on - strand at 5952.628 kb on - strand at 5952.628 kb on - strand at 5952.628 kb on - strand at 5952.671 kb on - strand at 5952.699 kb on - strand at 5952.699 kb on - strand at 5952.699 kb on - strand at 5952.699 kb on - strand at 5952.723 kb on - strand at 5952.884 kb on + strand at 5952.940 kb on - strand, within CA265_RS24440 at 5952.952 kb on - strand, within CA265_RS24440 at 5952.957 kb on + strand, within CA265_RS24440 at 5952.962 kb on - strand, within CA265_RS24440 at 5953.051 kb on + strand, within CA265_RS24440 at 5953.070 kb on + strand, within CA265_RS24440 at 5953.070 kb on + strand, within CA265_RS24440 at 5953.072 kb on + strand, within CA265_RS24440 at 5953.072 kb on + strand, within CA265_RS24440 at 5953.073 kb on - strand, within CA265_RS24440 at 5953.092 kb on - strand, within CA265_RS24440 at 5953.092 kb on - strand, within CA265_RS24440 at 5953.100 kb on + strand, within CA265_RS24440 at 5953.102 kb on + strand, within CA265_RS24440 at 5953.139 kb on + strand, within CA265_RS24440 at 5953.161 kb on - strand, within CA265_RS24440 at 5953.187 kb on - strand, within CA265_RS24440 at 5953.216 kb on - strand, within CA265_RS24440 at 5953.229 kb on + strand, within CA265_RS24440 at 5953.230 kb on - strand, within CA265_RS24440 at 5953.258 kb on + strand, within CA265_RS24440 at 5953.262 kb on + strand at 5953.271 kb on + strand, within CA265_RS24440 at 5953.281 kb on + strand, within CA265_RS24440 at 5953.282 kb on - strand, within CA265_RS24440 at 5953.282 kb on - strand, within CA265_RS24440 at 5953.337 kb on + strand, within CA265_RS24440 at 5953.338 kb on - strand, within CA265_RS24440 at 5953.346 kb on + strand, within CA265_RS24440 at 5953.380 kb on - strand, within CA265_RS24440 at 5953.396 kb on - strand, within CA265_RS24440 at 5953.396 kb on - strand, within CA265_RS24440 at 5953.421 kb on + strand, within CA265_RS24440 at 5953.431 kb on + strand, within CA265_RS24440 at 5953.433 kb on + strand, within CA265_RS24440 at 5953.534 kb on - strand, within CA265_RS24440 at 5953.596 kb on + strand, within CA265_RS24440 at 5953.597 kb on - strand, within CA265_RS24440 at 5953.614 kb on + strand, within CA265_RS24440 at 5953.756 kb on + strand at 5953.770 kb on + strand at 5953.773 kb on - strand at 5953.806 kb on - strand at 5953.880 kb on + strand at 5953.896 kb on + strand at 5953.897 kb on - strand at 5953.906 kb on - strand at 5953.940 kb on + strand, within CA265_RS24445 at 5953.975 kb on - strand, within CA265_RS24445 at 5953.992 kb on + strand, within CA265_RS24445 at 5954.020 kb on + strand, within CA265_RS24445 at 5954.023 kb on - strand, within CA265_RS24445 at 5954.052 kb on - strand, within CA265_RS24445 at 5954.076 kb on + strand, within CA265_RS24445 at 5954.093 kb on - strand, within CA265_RS24445 at 5954.101 kb on + strand at 5954.131 kb on + strand at 5954.132 kb on - strand at 5954.132 kb on - strand at 5954.174 kb on - strand, within CA265_RS24450 at 5954.190 kb on - strand, within CA265_RS24450 at 5954.194 kb on - strand, within CA265_RS24450 at 5954.194 kb on - strand, within CA265_RS24450 at 5954.219 kb on - strand, within CA265_RS24450 at 5954.238 kb on - strand, within CA265_RS24450 at 5954.278 kb on - strand, within CA265_RS24450 at 5954.357 kb on - strand, within CA265_RS24450 at 5954.360 kb on + strand, within CA265_RS24450 at 5954.360 kb on + strand, within CA265_RS24450 at 5954.361 kb on - strand, within CA265_RS24450 at 5954.363 kb on - strand, within CA265_RS24450 at 5954.389 kb on + strand, within CA265_RS24450 at 5954.389 kb on + strand, within CA265_RS24450 at 5954.389 kb on + strand, within CA265_RS24450 at 5954.441 kb on + strand at 5954.461 kb on - strand at 5954.465 kb on + strand at 5954.598 kb on + strand at 5954.599 kb on - strand at 5954.636 kb on + strand at 5954.679 kb on - strand at 5954.679 kb on - strand at 5954.730 kb on - strand at 5954.730 kb on - strand at 5954.746 kb on + strand at 5954.748 kb on + strand at 5954.840 kb on + strand at 5954.841 kb on - strand, within CA265_RS24455 at 5954.841 kb on - strand, within CA265_RS24455 at 5954.850 kb on - strand, within CA265_RS24455
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrite 6 mM remove 5,951,928 - CA265_RS24435 0.54 +0.9 5,951,928 - CA265_RS24435 0.54 -0.6 5,951,981 - CA265_RS24435 0.57 +0.5 5,951,981 - CA265_RS24435 0.57 -1.6 5,951,995 - CA265_RS24435 0.58 +1.2 5,952,076 - CA265_RS24435 0.62 -0.0 5,952,203 - CA265_RS24435 0.69 +0.4 5,952,306 - CA265_RS24435 0.74 -0.8 5,952,368 - CA265_RS24435 0.77 +0.4 5,952,368 - CA265_RS24435 0.77 +0.6 5,952,463 - CA265_RS24435 0.82 +0.5 5,952,508 - CA265_RS24435 0.85 -1.0 5,952,599 - CA265_RS24435 0.90 +0.0 5,952,610 - +0.6 5,952,610 - -0.8 5,952,628 - +0.1 5,952,628 - -0.6 5,952,628 - +0.4 5,952,671 - -0.7 5,952,699 - +0.2 5,952,699 - +0.7 5,952,699 - +0.4 5,952,699 - +0.3 5,952,723 - -0.3 5,952,884 + -0.9 5,952,940 - CA265_RS24440 0.13 -0.8 5,952,952 - CA265_RS24440 0.14 -0.5 5,952,957 + CA265_RS24440 0.14 -0.2 5,952,962 - CA265_RS24440 0.15 -1.0 5,953,051 + CA265_RS24440 0.23 -0.1 5,953,070 + CA265_RS24440 0.25 +0.7 5,953,070 + CA265_RS24440 0.25 +0.5 5,953,072 + CA265_RS24440 0.25 +0.1 5,953,072 + CA265_RS24440 0.25 +0.1 5,953,073 - CA265_RS24440 0.25 +2.4 5,953,092 - CA265_RS24440 0.27 +0.8 5,953,092 - CA265_RS24440 0.27 +0.9 5,953,100 + CA265_RS24440 0.28 +0.4 5,953,102 + CA265_RS24440 0.28 -2.4 5,953,139 + CA265_RS24440 0.32 -0.2 5,953,161 - CA265_RS24440 0.34 -0.3 5,953,187 - CA265_RS24440 0.36 -1.0 5,953,216 - CA265_RS24440 0.39 -0.9 5,953,229 + CA265_RS24440 0.40 -0.6 5,953,230 - CA265_RS24440 0.40 +0.0 5,953,258 + CA265_RS24440 0.43 -0.6 5,953,262 + +1.2 5,953,271 + CA265_RS24440 0.44 +0.4 5,953,281 + CA265_RS24440 0.45 -0.6 5,953,282 - CA265_RS24440 0.45 +0.5 5,953,282 - CA265_RS24440 0.45 +0.7 5,953,337 + CA265_RS24440 0.50 -1.1 5,953,338 - CA265_RS24440 0.51 +0.4 5,953,346 + CA265_RS24440 0.51 -1.9 5,953,380 - CA265_RS24440 0.55 +0.2 5,953,396 - CA265_RS24440 0.56 +0.9 5,953,396 - CA265_RS24440 0.56 +0.1 5,953,421 + CA265_RS24440 0.58 -0.7 5,953,431 + CA265_RS24440 0.59 +1.0 5,953,433 + CA265_RS24440 0.60 +0.1 5,953,534 - CA265_RS24440 0.69 +0.1 5,953,596 + CA265_RS24440 0.75 +0.2 5,953,597 - CA265_RS24440 0.75 +0.5 5,953,614 + CA265_RS24440 0.77 -1.3 5,953,756 + -0.2 5,953,770 + -0.2 5,953,773 - -0.8 5,953,806 - -0.4 5,953,880 + +0.3 5,953,896 + -1.0 5,953,897 - +0.7 5,953,906 - -0.8 5,953,940 + CA265_RS24445 0.22 -0.2 5,953,975 - CA265_RS24445 0.37 -0.8 5,953,992 + CA265_RS24445 0.44 +0.8 5,954,020 + CA265_RS24445 0.56 +0.8 5,954,023 - CA265_RS24445 0.57 -1.6 5,954,052 - CA265_RS24445 0.69 +0.2 5,954,076 + CA265_RS24445 0.79 -1.3 5,954,093 - CA265_RS24445 0.86 +1.3 5,954,101 + -2.7 5,954,131 + +0.6 5,954,132 - +0.1 5,954,132 - +0.4 5,954,174 - CA265_RS24450 0.16 -0.0 5,954,190 - CA265_RS24450 0.21 +0.6 5,954,194 - CA265_RS24450 0.22 +1.0 5,954,194 - CA265_RS24450 0.22 -0.3 5,954,219 - CA265_RS24450 0.30 -1.6 5,954,238 - CA265_RS24450 0.37 +0.8 5,954,278 - CA265_RS24450 0.50 +0.5 5,954,357 - CA265_RS24450 0.75 +1.7 5,954,360 + CA265_RS24450 0.76 -0.7 5,954,360 + CA265_RS24450 0.76 -0.7 5,954,361 - CA265_RS24450 0.77 +0.2 5,954,363 - CA265_RS24450 0.77 -0.2 5,954,389 + CA265_RS24450 0.86 +0.6 5,954,389 + CA265_RS24450 0.86 +0.4 5,954,389 + CA265_RS24450 0.86 -0.1 5,954,441 + -1.3 5,954,461 - -0.1 5,954,465 + +0.8 5,954,598 + +0.4 5,954,599 - -1.0 5,954,636 + +0.8 5,954,679 - -0.5 5,954,679 - +0.4 5,954,730 - +0.7 5,954,730 - -0.3 5,954,746 + -0.9 5,954,748 + -0.4 5,954,840 + +0.2 5,954,841 - CA265_RS24455 0.10 +0.3 5,954,841 - CA265_RS24455 0.10 +0.7 5,954,850 - CA265_RS24455 0.13 +0.2
Or see this region's nucleotide sequence