Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS24430

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
5,949,132	+				-0.6
5,949,174	+				-1.0
5,949,175	-				-0.3
5,949,178	-				+0.1
5,949,218	+				-1.2
5,949,278	-				-0.2
5,949,425	+				+0.9
5,949,442	+				-1.3
5,949,564	-				+0.8
5,949,564	-				+1.1
5,949,643	-				+0.5
5,949,749	+				-2.1
5,949,767	+				+0.1
5,949,783	-				-0.2
5,949,910	-				+0.2
5,950,019	-				-0.4
5,950,094	+				-0.7
5,950,097	+				-0.8
5,950,260	-		CA265_RS24430	0.29	-1.3
5,950,272	+		CA265_RS24430	0.31	-1.2
5,950,288	-		CA265_RS24430	0.33	+1.3
5,950,463	+		CA265_RS24430	0.62	-0.9
5,950,464	-		CA265_RS24430	0.62	-0.4
5,950,482	+		CA265_RS24430	0.65	-0.2
5,950,540	+		CA265_RS24430	0.74	-0.7
5,950,541	-		CA265_RS24430	0.74	+0.5
5,950,541	-		CA265_RS24430	0.74	-2.1
5,950,543	-		CA265_RS24430	0.75	+0.6
5,950,645	-				+0.8
5,950,645	-				-0.9
5,950,697	-				-0.2
5,950,717	+				-0.4
5,950,873	-				+0.5
5,950,906	+				-0.2
5,951,010	-				-0.5
5,951,010	-				-0.3
5,951,051	+				+1.6
5,951,054	-				-0.1
5,951,058	+				-0.6
5,951,059	-				-0.1
5,951,097	+		CA265_RS24435	0.10	-1.8
5,951,168	-		CA265_RS24435	0.14	+0.6
5,951,181	-		CA265_RS24435	0.15	-1.1
5,951,181	-		CA265_RS24435	0.15	+0.6
5,951,187	-		CA265_RS24435	0.15	+2.0
5,951,187	-		CA265_RS24435	0.15	-0.5
5,951,196	-		CA265_RS24435	0.16	-0.6
5,951,228	-		CA265_RS24435	0.17	-1.0
5,951,263	-		CA265_RS24435	0.19	+0.9
5,951,277	-		CA265_RS24435	0.20	-0.4
5,951,351	-		CA265_RS24435	0.24	+0.4
5,951,402	-		CA265_RS24435	0.27	+0.1
5,951,427	-		CA265_RS24435	0.28	+1.7
5,951,465	-		CA265_RS24435	0.30	-0.1
5,951,465	-		CA265_RS24435	0.30	+0.5
5,951,531	-		CA265_RS24435	0.33	-1.0
5,951,556	-		CA265_RS24435	0.35	+1.2
5,951,560	-		CA265_RS24435	0.35	+0.1
5,951,560	-		CA265_RS24435	0.35	+0.4
5,951,641	-		CA265_RS24435	0.39	+0.0