Experiment: R2A with nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23295 and CA265_RS23300 are separated by 63 nucleotides CA265_RS23300 and CA265_RS23305 are separated by 23 nucleotides CA265_RS23305 and CA265_RS23310 are separated by 82 nucleotides CA265_RS23310 and CA265_RS23315 are separated by 138 nucleotides
CA265_RS23295: CA265_RS23295 - oxidoreductase, at 5,695,018 to 5,696,472
_RS23295
CA265_RS23300: CA265_RS23300 - oxidoreductase, at 5,696,536 to 5,697,621
_RS23300
CA265_RS23305: CA265_RS23305 - hypothetical protein, at 5,697,645 to 5,697,878
_RS23305
CA265_RS23310: CA265_RS23310 - polyketide cyclase, at 5,697,961 to 5,698,410
_RS23310
CA265_RS23315: CA265_RS23315 - hypothetical protein, at 5,698,549 to 5,702,277
_RS23315
Position (kb) 5696
5697
5698 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5695.592 kb on + strand, within CA265_RS23295 at 5695.593 kb on - strand, within CA265_RS23295 at 5695.593 kb on - strand, within CA265_RS23295 at 5695.712 kb on - strand, within CA265_RS23295 at 5695.712 kb on - strand, within CA265_RS23295 at 5695.721 kb on - strand, within CA265_RS23295 at 5695.721 kb on - strand, within CA265_RS23295 at 5695.721 kb on - strand, within CA265_RS23295 at 5695.724 kb on + strand, within CA265_RS23295 at 5695.728 kb on + strand, within CA265_RS23295 at 5695.766 kb on - strand, within CA265_RS23295 at 5695.802 kb on + strand, within CA265_RS23295 at 5695.802 kb on + strand, within CA265_RS23295 at 5695.837 kb on - strand, within CA265_RS23295 at 5695.877 kb on + strand, within CA265_RS23295 at 5695.878 kb on - strand, within CA265_RS23295 at 5695.897 kb on + strand, within CA265_RS23295 at 5695.932 kb on + strand, within CA265_RS23295 at 5696.064 kb on + strand, within CA265_RS23295 at 5696.197 kb on - strand, within CA265_RS23295 at 5696.286 kb on - strand, within CA265_RS23295 at 5696.322 kb on - strand, within CA265_RS23295 at 5696.322 kb on - strand, within CA265_RS23295 at 5696.514 kb on - strand at 5696.617 kb on - strand at 5696.617 kb on - strand at 5696.636 kb on + strand at 5696.708 kb on - strand, within CA265_RS23300 at 5696.708 kb on - strand, within CA265_RS23300 at 5696.708 kb on - strand, within CA265_RS23300 at 5696.763 kb on + strand, within CA265_RS23300 at 5696.789 kb on - strand, within CA265_RS23300 at 5696.789 kb on - strand, within CA265_RS23300 at 5696.852 kb on + strand, within CA265_RS23300 at 5696.852 kb on + strand, within CA265_RS23300 at 5696.853 kb on - strand, within CA265_RS23300 at 5696.865 kb on - strand, within CA265_RS23300 at 5696.865 kb on - strand, within CA265_RS23300 at 5696.865 kb on - strand, within CA265_RS23300 at 5696.909 kb on + strand, within CA265_RS23300 at 5696.910 kb on - strand, within CA265_RS23300 at 5696.915 kb on - strand, within CA265_RS23300 at 5696.916 kb on + strand, within CA265_RS23300 at 5696.916 kb on + strand, within CA265_RS23300 at 5697.033 kb on - strand, within CA265_RS23300 at 5697.063 kb on + strand, within CA265_RS23300 at 5697.068 kb on + strand, within CA265_RS23300 at 5697.069 kb on - strand, within CA265_RS23300 at 5697.086 kb on - strand, within CA265_RS23300 at 5697.086 kb on - strand, within CA265_RS23300 at 5697.126 kb on - strand, within CA265_RS23300 at 5697.126 kb on - strand, within CA265_RS23300 at 5697.178 kb on + strand, within CA265_RS23300 at 5697.181 kb on - strand, within CA265_RS23300 at 5697.184 kb on + strand, within CA265_RS23300 at 5697.184 kb on + strand, within CA265_RS23300 at 5697.229 kb on + strand, within CA265_RS23300 at 5697.230 kb on - strand, within CA265_RS23300 at 5697.230 kb on - strand, within CA265_RS23300 at 5697.363 kb on + strand, within CA265_RS23300 at 5697.364 kb on - strand, within CA265_RS23300 at 5697.386 kb on + strand, within CA265_RS23300 at 5697.447 kb on + strand, within CA265_RS23300 at 5697.511 kb on - strand, within CA265_RS23300 at 5697.527 kb on + strand at 5697.749 kb on + strand, within CA265_RS23305 at 5697.909 kb on - strand at 5697.909 kb on - strand at 5697.919 kb on + strand at 5697.974 kb on - strand at 5697.987 kb on - strand at 5698.041 kb on + strand, within CA265_RS23310 at 5698.076 kb on - strand, within CA265_RS23310 at 5698.132 kb on - strand, within CA265_RS23310 at 5698.147 kb on - strand, within CA265_RS23310 at 5698.231 kb on + strand, within CA265_RS23310 at 5698.357 kb on - strand, within CA265_RS23310 at 5698.378 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrite 6 mM remove 5,695,592 + CA265_RS23295 0.39 +0.8 5,695,593 - CA265_RS23295 0.40 +0.6 5,695,593 - CA265_RS23295 0.40 +0.3 5,695,712 - CA265_RS23295 0.48 -0.5 5,695,712 - CA265_RS23295 0.48 -0.2 5,695,721 - CA265_RS23295 0.48 +0.8 5,695,721 - CA265_RS23295 0.48 -1.5 5,695,721 - CA265_RS23295 0.48 -0.7 5,695,724 + CA265_RS23295 0.49 +0.3 5,695,728 + CA265_RS23295 0.49 -0.9 5,695,766 - CA265_RS23295 0.51 +0.3 5,695,802 + CA265_RS23295 0.54 +0.9 5,695,802 + CA265_RS23295 0.54 +1.8 5,695,837 - CA265_RS23295 0.56 +0.1 5,695,877 + CA265_RS23295 0.59 +0.3 5,695,878 - CA265_RS23295 0.59 +0.6 5,695,897 + CA265_RS23295 0.60 -1.9 5,695,932 + CA265_RS23295 0.63 -0.8 5,696,064 + CA265_RS23295 0.72 -0.5 5,696,197 - CA265_RS23295 0.81 -3.0 5,696,286 - CA265_RS23295 0.87 +0.8 5,696,322 - CA265_RS23295 0.90 -0.4 5,696,322 - CA265_RS23295 0.90 -0.2 5,696,514 - +1.0 5,696,617 - -0.7 5,696,617 - -1.6 5,696,636 + -2.0 5,696,708 - CA265_RS23300 0.16 -0.4 5,696,708 - CA265_RS23300 0.16 -0.0 5,696,708 - CA265_RS23300 0.16 +0.0 5,696,763 + CA265_RS23300 0.21 +0.3 5,696,789 - CA265_RS23300 0.23 -0.7 5,696,789 - CA265_RS23300 0.23 -0.8 5,696,852 + CA265_RS23300 0.29 -0.3 5,696,852 + CA265_RS23300 0.29 -0.3 5,696,853 - CA265_RS23300 0.29 -0.0 5,696,865 - CA265_RS23300 0.30 -0.7 5,696,865 - CA265_RS23300 0.30 -0.1 5,696,865 - CA265_RS23300 0.30 +0.4 5,696,909 + CA265_RS23300 0.34 +0.5 5,696,910 - CA265_RS23300 0.34 -0.2 5,696,915 - CA265_RS23300 0.35 -0.3 5,696,916 + CA265_RS23300 0.35 +0.2 5,696,916 + CA265_RS23300 0.35 -0.0 5,697,033 - CA265_RS23300 0.46 -0.3 5,697,063 + CA265_RS23300 0.49 -0.3 5,697,068 + CA265_RS23300 0.49 +0.4 5,697,069 - CA265_RS23300 0.49 -1.2 5,697,086 - CA265_RS23300 0.51 -0.2 5,697,086 - CA265_RS23300 0.51 -0.5 5,697,126 - CA265_RS23300 0.54 -0.2 5,697,126 - CA265_RS23300 0.54 -1.6 5,697,178 + CA265_RS23300 0.59 +0.8 5,697,181 - CA265_RS23300 0.59 -0.1 5,697,184 + CA265_RS23300 0.60 -0.0 5,697,184 + CA265_RS23300 0.60 +1.5 5,697,229 + CA265_RS23300 0.64 +0.4 5,697,230 - CA265_RS23300 0.64 +0.0 5,697,230 - CA265_RS23300 0.64 -1.4 5,697,363 + CA265_RS23300 0.76 -0.1 5,697,364 - CA265_RS23300 0.76 -1.1 5,697,386 + CA265_RS23300 0.78 -0.4 5,697,447 + CA265_RS23300 0.84 -0.0 5,697,511 - CA265_RS23300 0.90 -0.5 5,697,527 + -2.7 5,697,749 + CA265_RS23305 0.44 +0.0 5,697,909 - +0.8 5,697,909 - -2.3 5,697,919 + -0.0 5,697,974 - -0.0 5,697,987 - +0.1 5,698,041 + CA265_RS23310 0.18 -0.6 5,698,076 - CA265_RS23310 0.26 +1.2 5,698,132 - CA265_RS23310 0.38 +1.5 5,698,147 - CA265_RS23310 0.41 +0.7 5,698,231 + CA265_RS23310 0.60 +0.7 5,698,357 - CA265_RS23310 0.88 +0.4 5,698,378 - -0.8
Or see this region's nucleotide sequence