Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22655

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
5,546,544	-		CA265_RS22650	0.21	+0.7
5,546,552	-		CA265_RS22650	0.22	-0.7
5,546,575	-		CA265_RS22650	0.24	-0.7
5,546,662	-		CA265_RS22650	0.32	-1.3
5,546,723	-		CA265_RS22650	0.38	+1.1
5,546,729	+		CA265_RS22650	0.38	-1.7
5,546,731	+		CA265_RS22650	0.39	+0.7
5,546,732	-		CA265_RS22650	0.39	+0.5
5,546,732	-		CA265_RS22650	0.39	-1.4
5,546,805	-		CA265_RS22650	0.46	+0.9
5,546,831	-		CA265_RS22650	0.48	+1.3
5,546,831	-		CA265_RS22650	0.48	+0.3
5,546,914	-		CA265_RS22650	0.56	+0.2
5,546,930	+		CA265_RS22650	0.57	+0.9
5,546,931	-		CA265_RS22650	0.57	-0.0
5,547,004	-		CA265_RS22650	0.64	+0.7
5,547,103	-		CA265_RS22650	0.74	+1.1
5,547,135	-		CA265_RS22650	0.77	-0.7
5,547,151	-		CA265_RS22650	0.78	+0.6
5,547,301	-				+0.2
5,547,301	-				+0.4
5,547,301	-				+0.1
5,547,380	+				+1.4
5,547,380	+				-0.6
5,547,381	-				+0.7
5,547,382	+				-0.1
5,547,420	+				+0.3
5,547,421	-				+0.9
5,547,477	+				-1.4
5,547,520	+				+0.5
5,547,693	+		CA265_RS22655	0.37	+0.5
5,547,693	+		CA265_RS22655	0.37	+1.1
5,547,693	+		CA265_RS22655	0.37	+0.6
5,547,694	-		CA265_RS22655	0.38	+0.5
5,547,762	+		CA265_RS22655	0.52	+0.7
5,547,913	+		CA265_RS22655	0.85	-0.4
5,547,914	+		CA265_RS22655	0.85	+0.0
5,547,914	+		CA265_RS22655	0.85	-0.5
5,547,915	-		CA265_RS22655	0.85	+1.3
5,547,990	-				-0.3
5,548,092	-				+0.9
5,548,093	+				-0.6
5,548,305	-				+3.2
5,548,305	-				-0.6
5,548,308	+				-0.9
5,548,398	+				+0.3
5,548,398	+				+0.2
5,548,399	-				-1.4
5,548,408	+				+0.3
5,548,467	-		CA265_RS22660	0.12	-0.1
5,548,493	+		CA265_RS22660	0.14	-0.4
5,548,494	-		CA265_RS22660	0.14	-0.4
5,548,610	-		CA265_RS22660	0.22	-1.5
5,548,631	-		CA265_RS22660	0.24	+0.4
5,548,675	+		CA265_RS22660	0.27	-0.4
5,548,675	+		CA265_RS22660	0.27	+1.3
5,548,676	-		CA265_RS22660	0.27	+1.1
5,548,676	-		CA265_RS22660	0.27	+0.0
5,548,725	+		CA265_RS22660	0.30	+0.0
5,548,781	+		CA265_RS22660	0.34	-2.5
5,548,885	-		CA265_RS22660	0.42	+0.7
5,548,921	+		CA265_RS22660	0.45	-0.2
5,548,921	+		CA265_RS22660	0.45	+0.7