Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS13605

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
3,399,141	+		CA265_RS13600	0.75	-0.8
3,399,142	-		CA265_RS13600	0.75	-0.8
3,399,195	-		CA265_RS13600	0.77	-1.8
3,399,295	-		CA265_RS13600	0.80	-0.2
3,399,297	-		CA265_RS13600	0.80	-0.3
3,399,297	-		CA265_RS13600	0.80	-0.7
3,399,325	+		CA265_RS13600	0.81	-0.9
3,399,332	+		CA265_RS13600	0.82	+0.1
3,399,333	-		CA265_RS13600	0.82	-0.1
3,399,333	-		CA265_RS13600	0.82	-0.2
3,399,351	+		CA265_RS13600	0.82	-0.5
3,399,364	-		CA265_RS13600	0.83	-0.5
3,399,493	-		CA265_RS13600	0.87	+0.0
3,399,513	+		CA265_RS13600	0.88	-0.1
3,399,618	+				-0.4
3,399,618	+				+0.7
3,399,619	-				+0.2
3,399,628	+				-1.1
3,399,655	+				-1.1
3,399,656	-				-3.0
3,399,886	+				+0.8
3,399,886	+				+0.2
3,399,888	+				+0.1
3,399,888	+				-2.4
3,399,888	+				+0.7
3,400,028	+				-0.4
3,400,029	-				-1.2
3,400,053	+				+0.1
3,400,087	-				+0.2
3,400,109	+				-0.3
3,400,250	+				+0.2
3,400,429	+		CA265_RS13605	0.20	-1.4
3,400,452	-		CA265_RS13605	0.22	+0.3
3,400,463	-		CA265_RS13605	0.22	-1.4
3,400,505	-		CA265_RS13605	0.25	+0.6
3,400,515	-		CA265_RS13605	0.25	+0.2
3,400,595	-		CA265_RS13605	0.30	-0.3
3,400,595	-		CA265_RS13605	0.30	-1.8
3,400,604	+		CA265_RS13605	0.31	+0.7
3,400,688	+		CA265_RS13605	0.36	-0.9
3,400,754	-		CA265_RS13605	0.40	-1.6
3,400,756	+		CA265_RS13605	0.40	+0.2
3,400,780	+		CA265_RS13605	0.42	-0.4
3,400,843	+		CA265_RS13605	0.46	+0.4
3,400,845	+		CA265_RS13605	0.46	+0.5
3,400,850	-		CA265_RS13605	0.46	+0.0
3,400,867	-		CA265_RS13605	0.47	-0.5
3,400,872	+		CA265_RS13605	0.48	-0.5
3,400,888	+		CA265_RS13605	0.49	+0.0
3,400,934	+		CA265_RS13605	0.52	+0.1
3,400,934	+		CA265_RS13605	0.52	-0.3
3,400,945	+		CA265_RS13605	0.52	+0.4
3,400,945	+		CA265_RS13605	0.52	-0.0
3,400,994	-		CA265_RS13605	0.55	-1.0
3,401,042	-		CA265_RS13605	0.58	-0.0
3,401,069	-		CA265_RS13605	0.60	-0.4
3,401,124	+		CA265_RS13605	0.63	-0.8
3,401,142	+		CA265_RS13605	0.65	-1.5
3,401,142	+		CA265_RS13605	0.65	-0.1
3,401,143	-		CA265_RS13605	0.65	-0.9
3,401,144	+		CA265_RS13605	0.65	-0.2
3,401,144	+		CA265_RS13605	0.65	-1.2
3,401,144	+		CA265_RS13605	0.65	-0.6
3,401,145	-		CA265_RS13605	0.65	+0.3
3,401,146	+		CA265_RS13605	0.65	+1.1
3,401,230	-		CA265_RS13605	0.70	+0.1
3,401,263	-		CA265_RS13605	0.72	+0.1
3,401,265	-		CA265_RS13605	0.72	-0.5
3,401,344	-				+1.5
3,401,347	+		CA265_RS13605	0.77	-0.1
3,401,351	+		CA265_RS13605	0.78	-1.2
3,401,382	+		CA265_RS13605	0.80	+0.3
3,401,383	-		CA265_RS13605	0.80	+0.1
3,401,383	-		CA265_RS13605	0.80	-0.1
3,401,722	+				-0.2
3,401,722	+				-0.5
3,401,724	+				-0.0
3,401,725	-				+0.5
3,401,727	-				-0.1
3,401,756	+				+0.8
3,401,756	+				-1.4
3,401,758	+				-0.2
3,401,759	-				-0.6
3,401,768	+				-1.1
3,401,813	+				+0.4
3,401,831	+				-0.6
3,401,831	+				-0.2
3,401,834	-				-0.6
3,401,852	-				+0.6
3,401,953	+				+0.3
3,401,953	+				-1.7
3,401,954	-				-0.2
3,401,986	+		CA265_RS13610	0.14	+0.5
3,401,986	+		CA265_RS13610	0.14	+0.3
3,401,986	+		CA265_RS13610	0.14	+0.7
3,401,987	-		CA265_RS13610	0.14	+0.4
3,401,987	-		CA265_RS13610	0.14	+0.3
3,401,987	-		CA265_RS13610	0.14	+0.6
3,401,987	-		CA265_RS13610	0.14	-0.2
3,402,030	+		CA265_RS13610	0.22	-0.8
3,402,031	-		CA265_RS13610	0.22	+0.2
3,402,229	+		CA265_RS13610	0.58	+1.0
3,402,252	+		CA265_RS13610	0.62	-1.3
3,402,253	-		CA265_RS13610	0.62	+0.8
3,402,253	-		CA265_RS13610	0.62	-0.8
3,402,258	+		CA265_RS13610	0.63	+1.5
3,402,258	+		CA265_RS13610	0.63	-0.3
3,402,280	-		CA265_RS13610	0.67	+0.7
3,402,343	-		CA265_RS13610	0.79	+0.6
3,402,436	+				-0.8
3,402,438	+				+0.5
3,402,438	+				+0.1
3,402,439	-				+0.4
3,402,440	+				+0.3
3,402,440	+				-0.5
3,402,454	+				-0.7
3,402,468	-				-0.4
3,402,468	-				+0.2
3,402,479	-				-0.1
3,402,504	+				-0.9
3,402,518	-				+1.3
3,402,518	-				-1.5
3,402,589	+				+0.8
3,402,590	-				-0.2
3,402,590	-				+0.7
3,402,649	-				-0.0