Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12810

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
3,190,286	+				+1.2
3,190,326	+		CA265_RS12805	0.14	+0.4
3,190,339	-		CA265_RS12805	0.16	-0.0
3,190,396	-		CA265_RS12805	0.26	-1.3
3,190,420	+		CA265_RS12805	0.30	+1.6
3,190,526	+		CA265_RS12805	0.47	-0.1
3,190,527	-		CA265_RS12805	0.47	+0.5
3,190,640	-		CA265_RS12805	0.66	+0.1
3,190,640	-		CA265_RS12805	0.66	+0.4
3,190,640	-		CA265_RS12805	0.66	-0.0
3,190,657	-		CA265_RS12805	0.69	-0.3
3,190,769	-		CA265_RS12805	0.88	-0.9
3,190,821	+				-0.3
3,190,821	+				+0.5
3,190,822	-				-0.5
3,190,822	-				-1.4
3,190,822	-				-0.3
3,190,901	+				+1.5
3,190,924	+				+1.4
3,190,924	+				-0.0
3,191,031	+				-0.4
3,191,036	+				+0.0
3,191,036	+				+0.2
3,191,037	-				-0.8
3,191,216	-		CA265_RS12810	0.18	-0.6
3,191,218	+		CA265_RS12810	0.18	+0.3
3,191,253	+		CA265_RS12810	0.20	+0.4
3,191,320	-		CA265_RS12810	0.24	-0.0
3,191,400	-		CA265_RS12810	0.29	-1.1
3,191,413	+		CA265_RS12810	0.30	+1.4
3,191,416	+		CA265_RS12810	0.30	+0.6
3,191,417	-		CA265_RS12810	0.30	-0.4
3,191,417	-		CA265_RS12810	0.30	+0.3
3,191,529	+		CA265_RS12810	0.37	+0.3
3,191,530	-		CA265_RS12810	0.37	+1.1
3,191,561	-		CA265_RS12810	0.39	+0.0
3,191,621	+		CA265_RS12810	0.42	-1.6
3,191,671	+		CA265_RS12810	0.45	+0.3
3,191,671	+		CA265_RS12810	0.45	+0.4
3,191,672	-		CA265_RS12810	0.45	+0.4
3,191,721	-		CA265_RS12810	0.48	+0.3
3,191,724	+		CA265_RS12810	0.48	+0.7
3,191,725	-		CA265_RS12810	0.49	-0.3
3,191,836	-		CA265_RS12810	0.55	+1.1
3,191,838	+		CA265_RS12810	0.55	+0.9
3,191,921	-		CA265_RS12810	0.60	-1.5
3,191,951	+		CA265_RS12810	0.62	+0.3
3,191,992	+		CA265_RS12810	0.65	+0.3
3,192,010	+		CA265_RS12810	0.66	-1.3
3,192,011	-		CA265_RS12810	0.66	+0.6
3,192,033	+		CA265_RS12810	0.67	+1.0
3,192,063	-		CA265_RS12810	0.69	-1.6
3,192,106	+		CA265_RS12810	0.72	+0.4
3,192,106	+		CA265_RS12810	0.72	+0.3
3,192,142	+		CA265_RS12810	0.74	-0.0
3,192,167	+		CA265_RS12810	0.75	-0.8
3,192,168	-		CA265_RS12810	0.75	-0.2
3,192,172	-		CA265_RS12810	0.76	+1.2
3,192,224	-		CA265_RS12810	0.79	+0.2
3,192,224	-		CA265_RS12810	0.79	-1.1
3,192,276	+		CA265_RS12810	0.82	-0.2
3,192,277	-		CA265_RS12810	0.82	+0.7
3,192,372	-		CA265_RS12810	0.88	+0.5
3,192,442	+				-0.0
3,192,442	+				+0.2
3,192,443	-				+0.7
3,192,443	-				-0.3
3,192,522	-				+0.0
3,192,595	+				-0.1
3,192,721	+				-0.2
3,192,771	+				+0.5
3,192,771	+				-0.2
3,192,771	+				+0.7
3,192,781	+				+0.6
3,192,861	-				+0.4
3,192,863	+				-0.0
3,192,864	-				-0.6
3,192,867	+				-0.1
3,192,878	+				+0.9
3,192,879	-				+0.8
3,192,879	-				+0.0
3,192,934	+				+0.2
3,192,941	+				-0.0
3,192,942	-				+0.1
3,192,966	+				-1.1
3,193,063	+		CA265_RS12815	0.12	-0.3
3,193,098	+		CA265_RS12815	0.14	+0.4
3,193,191	-		CA265_RS12815	0.17	+0.4
3,193,225	+		CA265_RS12815	0.18	+0.4
3,193,225	+		CA265_RS12815	0.18	+0.2
3,193,248	-		CA265_RS12815	0.19	-0.3
3,193,255	-		CA265_RS12815	0.19	+1.2
3,193,259	+		CA265_RS12815	0.19	-0.4
3,193,260	-		CA265_RS12815	0.19	+0.8
3,193,341	-		CA265_RS12815	0.22	-0.1
3,193,383	-		CA265_RS12815	0.24	-0.5
3,193,389	+		CA265_RS12815	0.24	+0.6
3,193,389	+		CA265_RS12815	0.24	+0.4
3,193,391	+		CA265_RS12815	0.24	+0.0
3,193,392	-		CA265_RS12815	0.24	+0.8
3,193,397	-		CA265_RS12815	0.24	+0.3
3,193,398	+		CA265_RS12815	0.24	+0.8
3,193,398	+		CA265_RS12815	0.24	+0.1
3,193,403	+		CA265_RS12815	0.25	+1.3
3,193,404	-		CA265_RS12815	0.25	+0.8
3,193,458	+		CA265_RS12815	0.27	-1.6
3,193,458	+		CA265_RS12815	0.27	-0.6
3,193,458	+		CA265_RS12815	0.27	+0.9
3,193,528	-		CA265_RS12815	0.29	-0.3
3,193,557	+		CA265_RS12815	0.30	-0.6