Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09045

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
2,252,944	+		CA265_RS09040	0.29	-1.6
2,252,962	+		CA265_RS09040	0.31	-0.6
2,252,963	-		CA265_RS09040	0.31	+1.4
2,253,076	+		CA265_RS09040	0.44	+1.4
2,253,114	-		CA265_RS09040	0.48	-0.9
2,253,116	+		CA265_RS09040	0.48	-0.1
2,253,116	+		CA265_RS09040	0.48	+0.0
2,253,192	+		CA265_RS09040	0.57	+0.7
2,253,196	-		CA265_RS09040	0.57	-0.4
2,253,198	-		CA265_RS09040	0.57	+0.6
2,253,262	-		CA265_RS09040	0.64	+0.4
2,253,263	+		CA265_RS09040	0.64	-0.5
2,253,263	+		CA265_RS09040	0.64	+0.1
2,253,298	-		CA265_RS09040	0.68	-0.7
2,253,428	-		CA265_RS09040	0.83	+0.5
2,253,546	-				-0.7
2,253,624	+				+0.6
2,253,656	-				+0.4
2,253,666	-				+0.6
2,253,703	-				-0.4
2,253,771	+				-1.1
2,253,787	+				+0.3
2,253,861	+				-1.5
2,253,867	+				+1.8
2,253,888	-				-0.9
2,253,932	-				-0.8
2,253,976	+				+0.1
2,254,056	-		CA265_RS09045	0.13	+0.9
2,254,069	-		CA265_RS09045	0.15	+1.1
2,254,071	+		CA265_RS09045	0.15	+0.1
2,254,078	-		CA265_RS09045	0.16	+0.6
2,254,098	-		CA265_RS09045	0.18	+1.6
2,254,120	-		CA265_RS09045	0.20	-0.4
2,254,145	+		CA265_RS09045	0.23	+0.7
2,254,240	-		CA265_RS09045	0.32	+0.8
2,254,350	-		CA265_RS09045	0.44	+0.1
2,254,358	+		CA265_RS09045	0.45	+1.3
2,254,450	-		CA265_RS09045	0.55	+0.1
2,254,477	-		CA265_RS09045	0.57	-0.7
2,254,518	-		CA265_RS09045	0.62	-0.5
2,254,518	-		CA265_RS09045	0.62	+0.6
2,254,547	+		CA265_RS09045	0.65	-1.8
2,254,552	-		CA265_RS09045	0.65	-0.5
2,254,559	+		CA265_RS09045	0.66	+0.1
2,254,560	-		CA265_RS09045	0.66	+1.0
2,254,560	-		CA265_RS09045	0.66	-0.6
2,254,574	+		CA265_RS09045	0.68	+1.2
2,254,607	+		CA265_RS09045	0.71	+0.3
2,254,608	-		CA265_RS09045	0.71	+0.9
2,254,627	+		CA265_RS09045	0.73	+1.2
2,254,639	-		CA265_RS09045	0.74	+1.1
2,254,756	+		CA265_RS09045	0.87	+1.9
2,254,767	+		CA265_RS09045	0.88	+0.4
2,254,768	-		CA265_RS09045	0.88	-0.1
2,254,768	-		CA265_RS09045	0.88	+0.5
2,254,773	-		CA265_RS09045	0.88	-0.7
2,254,828	-				+0.7
2,254,857	+				+1.9
2,254,893	-				+0.1
2,254,903	+				+0.3
2,254,904	-				+0.3
2,254,904	-				+0.1
2,254,904	-				-0.0
2,254,917	+				-0.7
2,254,974	-				+0.1
2,255,032	-				+0.4
2,255,100	+				+0.3
2,255,139	+		CA265_RS09050	0.11	+0.3
2,255,267	+		CA265_RS09050	0.28	+0.3
2,255,267	+		CA265_RS09050	0.28	+0.0
2,255,282	-		CA265_RS09050	0.29	+0.3
2,255,347	-		CA265_RS09050	0.38	+0.7
2,255,376	-		CA265_RS09050	0.42	+0.2
2,255,484	+		CA265_RS09050	0.55	+0.3
2,255,484	+		CA265_RS09050	0.55	-0.2
2,255,512	-		CA265_RS09050	0.59	+0.1
2,255,554	+		CA265_RS09050	0.64	-0.5
2,255,638	+		CA265_RS09050	0.75	+0.9
2,255,755	-				+0.3
2,255,804	-				-0.6
2,255,820	+				+0.1
2,255,863	-				+0.4